Wall clock time and date at job start Tue Mar 31 2020 17:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46509 * 110.28561 * 2 1 4 4 C 1.34780 * 119.99944 * 299.32696 * 3 2 1 5 5 O 1.21277 * 120.00018 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99529 * 179.97438 * 4 3 2 7 7 C 1.53009 * 109.46953 * 180.02562 * 6 4 3 8 8 C 1.52995 * 109.47383 * 180.02562 * 7 6 4 9 9 F 1.39901 * 109.47050 * 64.99925 * 8 7 6 10 10 F 1.39896 * 109.47416 * 185.00381 * 8 7 6 11 11 C 1.54262 * 110.32513 * 237.87458 * 2 1 3 12 12 C 1.54377 * 105.05927 * 240.99970 * 11 2 1 13 13 N 1.48552 * 104.59445 * 336.14521 * 12 11 2 14 14 C 1.46902 * 110.99920 * 159.04050 * 13 12 11 15 15 C 1.50702 * 109.47027 * 69.87237 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00042 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 89.99599 * 22 20 18 24 24 H 1.48494 * 109.47201 * 209.99761 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99936 * 22 20 18 26 26 C 1.48563 * 104.22423 * 39.48587 * 13 12 11 27 27 H 1.09006 * 109.47185 * 180.67440 * 1 2 3 28 28 H 1.09005 * 109.47366 * 300.67027 * 1 2 3 29 29 H 1.09002 * 109.47760 * 60.67469 * 1 2 3 30 30 H 0.96995 * 119.99860 * 119.32821 * 3 2 1 31 31 H 1.08999 * 109.47389 * 299.99610 * 6 4 3 32 32 H 1.09004 * 109.47503 * 60.00564 * 6 4 3 33 33 H 1.08999 * 109.46752 * 299.99998 * 7 6 4 34 34 H 1.09004 * 109.46556 * 59.99983 * 7 6 4 35 35 H 1.09008 * 109.46879 * 305.00513 * 8 7 6 36 36 H 1.09002 * 110.32250 * 122.10021 * 11 2 1 37 37 H 1.08998 * 110.40670 * 359.94081 * 11 2 1 38 38 H 1.09000 * 110.40771 * 217.36703 * 12 11 2 39 39 H 1.08995 * 110.51009 * 94.98023 * 12 11 2 40 40 H 1.09004 * 109.47131 * 309.87481 * 14 13 12 41 41 H 1.08994 * 109.47471 * 189.87230 * 14 13 12 42 42 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 43 43 H 0.97005 * 120.00014 * 180.02562 * 21 20 18 44 44 H 1.08995 * 110.40809 * 79.29078 * 26 13 12 45 45 H 1.08997 * 110.41077 * 201.73969 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0379 1.3742 0.0000 4 6 1.7353 2.2045 -1.0176 5 8 1.0421 1.8142 -1.9331 6 6 2.2573 3.6181 -1.0173 7 6 1.7710 4.3417 -2.2747 8 6 2.3014 5.7768 -2.2747 9 9 3.6968 5.7581 -2.3747 10 9 1.7651 6.4722 -3.3636 11 6 2.0657 -0.7692 -1.2251 12 6 2.8828 -1.9400 -0.6377 13 7 3.2720 -1.4805 0.7203 14 6 3.6119 -2.6192 1.5840 15 6 4.9067 -3.2339 1.1184 16 8 5.4894 -2.7689 0.1616 17 7 5.4205 -4.2966 1.7690 18 6 6.6013 -4.8523 1.3490 19 1 7.1200 -4.4382 0.4970 20 6 7.1307 -5.9482 2.0193 21 7 8.2628 -6.4805 1.6170 22 14 6.2331 -6.6648 3.4925 23 1 5.2888 -7.7152 3.0340 24 1 7.2182 -7.2602 4.4307 25 1 5.4787 -5.5887 4.1840 26 6 2.0683 -0.7706 1.2245 27 1 -0.3634 -1.0276 0.0121 28 1 -0.3634 0.5242 0.8839 29 1 -0.3635 0.5033 -0.8960 30 1 2.5919 1.6864 0.7323 31 1 1.8911 4.1405 -0.1335 32 1 3.3471 3.6031 -1.0050 33 1 2.1368 3.8195 -3.1587 34 1 0.6811 4.3568 -2.2865 35 1 2.0102 6.2718 -1.3482 36 1 2.7066 -0.1244 -1.8264 37 1 1.2398 -1.1484 -1.8268 38 1 3.7689 -2.1271 -1.2442 39 1 2.2701 -2.8391 -0.5738 40 1 2.8174 -3.3637 1.5332 41 1 3.7222 -2.2751 2.6123 42 1 4.9548 -4.6683 2.5344 43 1 8.6322 -7.2458 2.0847 44 1 1.3264 -1.4857 1.5799 45 1 2.3412 -0.0773 2.0201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716843412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:55 Heat of formation + Delta-G solvation = -197.567997 kcal Electronic energy + Delta-G solvation = -28717.786791 eV Core-core repulsion = 24211.680909 eV Total energy + Delta-G solvation = -4506.105882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.86683 -47.90191 -41.51276 -40.38352 -39.13298 -36.12864 -35.50656 -34.74453 -33.75428 -32.62206 -30.68050 -29.06584 -27.94909 -26.82987 -25.25227 -23.53016 -22.66461 -21.62511 -21.25500 -20.54793 -20.05882 -18.62223 -18.43338 -17.82317 -17.69704 -17.45472 -16.96090 -16.66627 -16.47033 -16.30766 -15.97457 -15.56665 -15.13411 -14.94258 -14.87146 -14.57862 -14.46442 -14.37962 -14.23508 -14.08350 -13.83427 -13.51136 -13.37452 -13.19258 -13.07955 -13.00044 -12.86482 -12.68420 -12.40545 -12.26337 -12.14604 -11.98587 -11.92960 -11.82385 -11.77611 -11.47615 -10.69373 -10.39624 -10.23707 -10.01815 -9.38326 -8.40434 -6.01452 1.30317 1.36395 1.45395 1.70730 1.98041 2.16515 2.23889 2.65091 3.00603 3.15550 3.23179 3.39188 3.46117 3.54577 3.68440 3.74028 3.99966 4.01698 4.13389 4.23685 4.28771 4.35736 4.39463 4.42640 4.49469 4.58574 4.66380 4.69923 4.81223 4.84051 4.89105 4.91453 5.05851 5.12101 5.15148 5.32141 5.53292 5.63277 5.84556 5.90082 6.01790 6.60793 6.65739 6.89902 7.34657 7.41263 7.99647 8.77373 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.021069 B = 0.002101 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.660395 B =13321.089188 C =14117.379430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.176 3.824 3 N -0.707 5.707 4 C 0.511 3.489 5 O -0.576 6.576 6 C -0.135 4.135 7 C -0.152 4.152 8 C 0.259 3.741 9 F -0.221 7.221 10 F -0.223 7.223 11 C -0.111 4.111 12 C 0.037 3.963 13 N -0.507 5.507 14 C 0.043 3.957 15 C 0.450 3.550 16 O -0.609 6.609 17 N -0.593 5.593 18 C -0.326 4.326 19 H 0.052 0.948 20 C -0.019 4.019 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.258 1.258 24 H -0.276 1.276 25 H -0.227 1.227 26 C 0.034 3.966 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.415 0.585 31 H 0.140 0.860 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.157 0.843 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.390 0.610 43 H 0.278 0.722 44 H 0.082 0.918 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.851 21.046 5.158 30.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.089 3.911 3 N -0.359 5.359 4 C 0.299 3.701 5 O -0.455 6.455 6 C -0.175 4.175 7 C -0.191 4.191 8 C 0.206 3.794 9 F -0.203 7.203 10 F -0.204 7.204 11 C -0.151 4.151 12 C -0.091 4.091 13 N -0.231 5.231 14 C -0.088 4.088 15 C 0.238 3.762 16 O -0.493 6.493 17 N -0.235 5.235 18 C -0.456 4.456 19 H 0.070 0.930 20 C -0.217 4.217 21 N -0.577 5.577 22 Si 0.787 3.213 23 H -0.183 1.183 24 H -0.201 1.201 25 H -0.151 1.151 26 C -0.093 4.093 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.252 0.748 31 H 0.158 0.842 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.174 0.826 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.146 0.854 42 H 0.225 0.775 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -21.282 21.290 3.864 30.350 hybrid contribution 0.282 -1.411 0.243 1.459 sum -21.000 19.879 4.107 29.206 Atomic orbital electron populations 1.22106 0.92224 1.03115 1.03205 1.20954 0.94383 0.81565 0.94207 1.46075 1.53313 1.11462 1.25066 1.20958 0.79538 0.88351 0.81249 1.90687 1.39952 1.78199 1.36697 1.21603 1.03826 0.91595 1.00466 1.22336 1.04018 0.92953 0.99763 1.22385 0.73790 0.93763 0.89505 1.92975 1.32822 1.97422 1.97081 1.92959 1.86045 1.81371 1.60068 1.22568 0.98760 0.96125 0.97610 1.23050 0.98031 0.96716 0.91272 1.65079 1.33703 1.22642 1.01681 1.22045 0.93670 0.93697 0.99388 1.20947 0.88872 0.81542 0.84829 1.90549 1.63997 1.63787 1.30979 1.42024 1.21791 1.29441 1.30225 1.18970 0.99375 1.12704 1.14510 0.92970 1.26158 0.96935 0.96460 1.02131 1.69816 1.20761 1.24242 1.42923 0.85339 0.78807 0.79843 0.77351 1.18280 1.20149 1.15058 1.23545 0.91121 0.98180 0.96477 0.90900 0.90526 0.92225 0.74787 0.84170 0.87402 0.91498 0.87655 0.82555 0.93208 0.90565 0.93037 0.93299 0.89871 0.85448 0.77461 0.91210 0.89986 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.17 71.98 0.59 -1.74 16 2 C 0.18 3.26 1.01 4.49 0.00 3.26 16 3 N -0.71 -11.07 5.10 -418.88 -2.13 -13.21 16 4 C 0.51 9.08 6.99 87.65 0.61 9.69 16 5 O -0.58 -14.77 13.27 -3.02 -0.04 -14.81 16 6 C -0.14 -1.33 5.62 29.85 0.17 -1.16 16 7 C -0.15 -1.92 4.73 30.60 0.14 -1.77 16 8 C 0.26 2.82 5.29 71.98 0.38 3.20 16 9 F -0.22 -3.69 17.02 44.97 0.77 -2.92 16 10 F -0.22 -3.75 17.34 44.97 0.78 -2.97 16 11 C -0.11 -2.91 5.48 31.49 0.17 -2.74 16 12 C 0.04 1.16 5.80 86.45 0.50 1.66 16 13 N -0.51 -14.10 5.06 -886.09 -4.49 -18.59 16 14 C 0.04 1.24 5.30 85.56 0.45 1.69 16 15 C 0.45 19.97 7.58 87.66 0.66 20.64 16 16 O -0.61 -33.78 14.42 -3.07 -0.04 -33.82 16 17 N -0.59 -27.49 5.09 -306.98 -1.56 -29.05 16 18 C -0.33 -19.09 10.16 84.04 0.85 -18.23 16 19 H 0.05 3.67 7.39 -2.91 -0.02 3.64 16 20 C -0.02 -1.03 5.50 84.92 0.47 -0.56 16 21 N -0.94 -56.65 13.96 21.66 0.30 -56.35 16 22 Si 0.97 38.21 27.74 68.60 1.90 40.11 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.23 -7.38 6.52 99.48 0.65 -6.74 16 26 C 0.03 0.58 5.69 86.45 0.49 1.07 16 27 H 0.07 1.02 8.13 -2.38 -0.02 1.01 16 28 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.06 1.22 6.31 -2.39 -0.02 1.20 16 30 H 0.41 4.42 8.26 -92.71 -0.77 3.66 16 31 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.11 1.06 7.94 -2.39 -0.02 1.04 16 33 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 34 H 0.10 1.26 8.10 -2.39 -0.02 1.24 16 35 H 0.16 0.29 8.14 -2.38 -0.02 0.27 16 36 H 0.05 1.55 7.31 -2.39 -0.02 1.53 16 37 H 0.08 1.92 7.71 -2.39 -0.02 1.90 16 38 H 0.05 2.09 6.91 -2.39 -0.02 2.07 16 39 H 0.05 1.38 7.82 -2.39 -0.02 1.36 16 40 H 0.08 1.92 7.88 -2.38 -0.02 1.90 16 41 H 0.13 2.78 8.13 -2.39 -0.02 2.76 16 42 H 0.39 14.72 5.76 -92.71 -0.53 14.19 16 43 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 44 H 0.08 1.07 7.71 -2.39 -0.02 1.06 16 45 H 0.11 1.36 7.75 -2.39 -0.02 1.34 16 Total: -1.00 -86.10 370.97 0.66 -85.44 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.33 Total: 31.18 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 5.50 Total: 15.00 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -7.88 Total: -117.20 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.08 Total: -48.63 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 1.54 Total: -5.90 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 1.90 Total: 40.11 kcal Total: -86.10 0.66 -85.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716843412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.128 kcal (2) G-P(sol) polarization free energy of solvation -86.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds