Wall clock time and date at job start Tue Mar 31 2020 18:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.53458 * 2 1 4 4 C 1.53040 * 109.50338 * 120.09772 * 2 1 3 5 5 N 1.46845 * 109.52074 * 60.75993 * 4 2 1 6 6 C 1.46905 * 110.99920 * 185.83807 * 5 4 2 7 7 C 1.50696 * 109.46937 * 170.00361 * 6 5 4 8 8 O 1.21292 * 120.00259 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99761 * 179.97438 * 7 6 5 10 10 C 1.37105 * 119.99976 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99986 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99677 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00253 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99496 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47399 * 299.99614 * 14 12 10 17 17 H 1.48498 * 109.47295 * 60.00221 * 14 12 10 18 18 C 1.46854 * 111.19752 * 61.74695 * 5 4 2 19 19 C 1.53038 * 109.52021 * 298.25390 * 18 5 4 20 20 C 1.53113 * 109.50310 * 239.90215 * 2 1 3 21 21 H 1.09006 * 109.52361 * 177.81016 * 20 2 1 22 22 N 1.46498 * 109.52378 * 57.68121 * 20 2 1 23 23 C 1.34783 * 119.99981 * 155.00041 * 22 20 2 24 24 O 1.21285 * 119.99950 * 359.97438 * 23 22 20 25 25 C 1.50704 * 120.00102 * 180.02562 * 23 22 20 26 26 F 1.39893 * 109.47026 * 184.99981 * 25 23 22 27 27 F 1.39899 * 109.46814 * 304.99797 * 25 23 22 28 28 H 1.08996 * 109.46968 * 299.89865 * 1 2 3 29 29 H 1.08996 * 109.46805 * 59.90029 * 1 2 3 30 30 H 1.09001 * 109.47082 * 179.90001 * 1 2 3 31 31 H 1.08993 * 109.47150 * 180.09709 * 3 2 1 32 32 H 1.08998 * 109.47159 * 300.10186 * 3 2 1 33 33 H 1.09005 * 109.46942 * 60.09636 * 3 2 1 34 34 H 1.09000 * 109.46242 * 300.74594 * 4 2 1 35 35 H 1.08993 * 109.46111 * 180.77971 * 4 2 1 36 36 H 1.09000 * 109.47082 * 50.00446 * 6 5 4 37 37 H 1.09004 * 109.47143 * 290.00401 * 6 5 4 38 38 H 0.96999 * 120.00043 * 0.02562 * 9 7 6 39 39 H 0.97000 * 119.99719 * 359.97438 * 13 12 10 40 40 H 1.09001 * 109.46266 * 58.26795 * 18 5 4 41 41 H 1.08992 * 109.46241 * 178.24294 * 18 5 4 42 42 H 1.09004 * 109.50549 * 299.24240 * 19 18 5 43 43 H 1.08993 * 109.53683 * 179.14181 * 19 18 5 44 44 H 0.96999 * 120.00127 * 334.99992 * 22 20 2 45 45 H 1.08996 * 109.47137 * 64.99321 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0410 -0.7234 1.2481 5 7 1.5675 -2.1134 1.2379 6 6 1.9223 -2.7996 2.4875 7 6 1.2171 -4.1300 2.5476 8 8 0.4908 -4.4731 1.6388 9 7 1.3943 -4.9391 3.6109 10 6 0.7523 -6.1493 3.6659 11 1 0.1050 -6.4544 2.8571 12 6 0.9345 -6.9831 4.7624 13 7 1.7218 -6.6116 5.7468 14 14 0.0604 -8.6323 4.8370 15 1 0.4186 -9.3256 6.1004 16 1 -1.4082 -8.4167 4.7904 17 1 0.4754 -9.4653 3.6798 18 6 2.0847 -2.8420 0.0724 19 6 1.5750 -2.1818 -1.2107 20 6 2.0412 -0.7238 -1.2487 21 1 3.1306 -0.6901 -1.2689 22 7 1.5088 -0.0693 -2.4463 23 6 2.1680 -0.1684 -3.6178 24 8 3.2020 -0.7991 -3.6803 25 6 1.6206 0.5054 -4.8497 26 9 2.4092 0.1681 -5.9549 27 9 0.3056 0.0808 -5.0681 28 1 -0.3633 0.5122 0.8909 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3633 -1.0277 -0.0018 31 1 3.1316 1.4407 -0.0017 32 1 1.6774 1.9567 -0.8890 33 1 1.6803 1.9557 0.8909 34 1 1.6670 -0.2189 2.1390 35 1 3.1308 -0.7109 1.2544 36 1 1.6177 -2.1881 3.3369 37 1 3.0003 -2.9578 2.5217 38 1 1.9754 -4.6648 4.3375 39 1 2.1760 -5.7554 5.7078 40 1 3.1744 -2.8196 0.0843 41 1 1.7423 -3.8761 0.1094 42 1 0.4857 -2.2161 -1.2298 43 1 1.9710 -2.7131 -2.0761 44 1 0.6820 0.4354 -2.3962 45 1 1.6348 1.5862 -4.7094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724967116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:57 Heat of formation + Delta-G solvation = -167.565126 kcal Electronic energy + Delta-G solvation = -29808.767756 eV Core-core repulsion = 25303.962896 eV Total energy + Delta-G solvation = -4504.804860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.54842 -47.57591 -40.80995 -39.21361 -38.10964 -35.56547 -34.25310 -33.60053 -31.79785 -31.01737 -28.70848 -27.51991 -27.45843 -26.10767 -24.37303 -23.11139 -21.65812 -21.17870 -19.56203 -19.43433 -18.41323 -18.16379 -17.89856 -17.74187 -16.41862 -16.28057 -15.85425 -15.33444 -15.16892 -14.87079 -14.50799 -14.44381 -14.26381 -14.21832 -13.90875 -13.80820 -13.68308 -13.63881 -13.29455 -13.22279 -12.63912 -12.54678 -12.32114 -12.14694 -11.87087 -11.49773 -11.44397 -11.29414 -11.20845 -11.00795 -10.91723 -10.66957 -10.52301 -10.22065 -10.20692 -9.86182 -9.54890 -9.37660 -8.51113 -8.05197 -7.92849 -6.75581 -3.88762 1.78375 2.23207 3.30796 3.34820 3.38413 3.54880 3.69656 3.81890 3.86583 4.11883 4.25958 4.29226 4.31676 4.58537 4.64064 4.86059 5.06095 5.13347 5.22955 5.23807 5.33409 5.38278 5.40708 5.53078 5.61351 5.62510 5.69468 5.76024 5.80106 5.85406 5.91521 5.99039 6.00314 6.04142 6.23717 6.42224 6.46862 6.85999 7.16466 7.30584 7.51111 7.80652 8.07877 8.60006 8.80084 9.47396 9.88058 10.67887 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.002456 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.428547 B =11398.548455 C =12074.579202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C -0.141 4.141 4 C 0.067 3.933 5 N -0.512 5.512 6 C 0.046 3.954 7 C 0.446 3.554 8 O -0.570 6.570 9 N -0.576 5.576 10 C -0.381 4.381 11 H 0.099 0.901 12 C -0.010 4.010 13 N -0.902 5.902 14 Si 1.091 2.909 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.055 3.945 19 C -0.123 4.123 20 C 0.153 3.847 21 H 0.089 0.911 22 N -0.703 5.703 23 C 0.470 3.530 24 O -0.501 6.501 25 C 0.257 3.743 26 F -0.176 7.176 27 F -0.187 7.187 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.375 0.625 39 H 0.261 0.739 40 H 0.024 0.976 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.405 0.595 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 20.369 -13.744 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.067 4.067 3 C -0.199 4.199 4 C -0.062 4.062 5 N -0.236 5.236 6 C -0.085 4.085 7 C 0.232 3.768 8 O -0.454 6.454 9 N -0.215 5.215 10 C -0.510 4.510 11 H 0.117 0.883 12 C -0.212 4.212 13 N -0.541 5.541 14 Si 0.917 3.083 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.073 4.073 19 C -0.162 4.162 20 C 0.049 3.951 21 H 0.107 0.893 22 N -0.356 5.356 23 C 0.251 3.749 24 O -0.374 6.374 25 C 0.200 3.800 26 F -0.157 7.157 27 F -0.169 7.169 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.208 0.792 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.242 0.758 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.234 18.267 -13.530 22.733 hybrid contribution 1.061 1.858 -0.520 2.202 sum 1.295 20.124 -14.051 24.578 Atomic orbital electron populations 1.21854 0.93043 1.03982 1.00651 1.20825 0.97411 0.94752 0.93686 1.21862 1.01105 0.94894 1.02034 1.22115 0.97150 0.89659 0.97237 1.61505 1.59784 1.00601 1.01710 1.21831 0.98003 0.95826 0.92842 1.19645 0.86619 0.86011 0.84509 1.90490 1.41302 1.75443 1.38127 1.41948 1.43115 1.17679 1.18716 1.20519 1.27430 0.94478 1.08593 0.88327 1.26494 0.98139 1.04920 0.91640 1.70904 1.28060 1.22756 1.32366 0.83142 0.75496 0.73309 0.76402 1.20433 1.21003 1.21021 1.22219 0.95890 1.00709 0.88452 1.21973 1.02742 0.93616 0.97869 1.21265 0.99044 0.92522 0.82245 0.89343 1.46096 1.27179 1.53710 1.08622 1.21055 0.85989 0.82494 0.85373 1.90838 1.22878 1.39208 1.84495 1.21665 0.74078 1.00495 0.83780 1.93066 1.74071 1.94417 1.54178 1.93071 1.36215 1.92229 1.95355 0.92229 0.93887 0.89912 0.92577 0.92572 0.91936 0.90152 0.94906 0.89368 0.93526 0.79213 0.92781 0.95777 0.87399 0.90070 0.91270 0.75840 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.83 37.16 0.29 -1.01 16 2 C -0.07 -0.61 0.57 -154.43 -0.09 -0.70 16 3 C -0.14 -0.99 8.35 37.16 0.31 -0.68 16 4 C 0.07 0.76 4.18 -3.83 -0.02 0.75 16 5 N -0.51 -7.80 3.68 -236.11 -0.87 -8.66 16 6 C 0.05 0.78 5.45 -4.97 -0.03 0.76 16 7 C 0.45 10.21 7.46 -10.99 -0.08 10.13 16 8 O -0.57 -14.94 13.90 5.55 0.08 -14.86 16 9 N -0.58 -14.25 5.28 -10.96 -0.06 -14.31 16 10 C -0.38 -10.59 9.68 -14.93 -0.14 -10.74 16 11 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 12 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 13 N -0.90 -25.15 13.68 55.50 0.76 -24.39 16 14 Si 1.09 24.22 29.92 -169.99 -5.09 19.13 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 C 0.06 0.88 5.11 -3.83 -0.02 0.86 16 19 C -0.12 -1.66 5.32 -26.65 -0.14 -1.81 16 20 C 0.15 1.63 1.63 -67.81 -0.11 1.52 16 21 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 22 N -0.70 -6.00 4.37 -53.68 -0.23 -6.24 16 23 C 0.47 4.76 7.60 -10.98 -0.08 4.68 16 24 O -0.50 -7.28 16.28 5.55 0.09 -7.19 16 25 C 0.26 1.89 5.72 36.01 0.21 2.09 16 26 F -0.18 -1.82 16.95 2.25 0.04 -1.79 16 27 F -0.19 -1.57 17.32 2.25 0.04 -1.53 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.30 6.42 -51.93 -0.33 -0.03 16 30 H 0.08 1.03 6.01 -51.93 -0.31 0.72 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.32 7.63 -51.93 -0.40 -0.07 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.84 8.02 -51.93 -0.42 0.43 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 1.32 7.99 -51.93 -0.41 0.91 16 37 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 38 H 0.37 8.58 6.73 -40.82 -0.27 8.30 16 39 H 0.26 6.97 6.77 -40.82 -0.28 6.70 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.11 2.13 5.78 -51.93 -0.30 1.83 16 42 H 0.08 1.14 6.58 -51.93 -0.34 0.80 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.40 2.45 6.67 -40.82 -0.27 2.18 16 45 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -34.17 365.55 -6.02 -40.20 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.28 Total: 8.64 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 0.00 Total: 5.50 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.40 Total: -53.60 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.17 Total: -22.06 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.09 Total: 19.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.17 -6.02 -40.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724967116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.370 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds