Wall clock time and date at job start Tue Mar 31 2020 18:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.53458 * 2 1 4 4 C 1.53040 * 109.50338 * 120.09772 * 2 1 3 5 5 N 1.46845 * 109.52074 * 60.75993 * 4 2 1 6 6 C 1.46905 * 110.99920 * 185.83807 * 5 4 2 7 7 C 1.50696 * 109.46937 * 170.00361 * 6 5 4 8 8 O 1.21292 * 120.00259 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99761 * 179.97438 * 7 6 5 10 10 C 1.37105 * 119.99976 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99986 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99677 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00253 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99496 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47399 * 299.99614 * 14 12 10 17 17 H 1.48498 * 109.47295 * 60.00221 * 14 12 10 18 18 C 1.46854 * 111.19752 * 61.74695 * 5 4 2 19 19 C 1.53038 * 109.52021 * 298.25390 * 18 5 4 20 20 C 1.53113 * 109.50310 * 239.90215 * 2 1 3 21 21 H 1.09006 * 109.52361 * 177.81016 * 20 2 1 22 22 N 1.46498 * 109.52378 * 57.68121 * 20 2 1 23 23 C 1.34783 * 119.99981 * 155.00041 * 22 20 2 24 24 O 1.21285 * 119.99950 * 359.97438 * 23 22 20 25 25 C 1.50704 * 120.00102 * 180.02562 * 23 22 20 26 26 F 1.39893 * 109.47026 * 184.99981 * 25 23 22 27 27 F 1.39899 * 109.46814 * 304.99797 * 25 23 22 28 28 H 1.08996 * 109.46968 * 299.89865 * 1 2 3 29 29 H 1.08996 * 109.46805 * 59.90029 * 1 2 3 30 30 H 1.09001 * 109.47082 * 179.90001 * 1 2 3 31 31 H 1.08993 * 109.47150 * 180.09709 * 3 2 1 32 32 H 1.08998 * 109.47159 * 300.10186 * 3 2 1 33 33 H 1.09005 * 109.46942 * 60.09636 * 3 2 1 34 34 H 1.09000 * 109.46242 * 300.74594 * 4 2 1 35 35 H 1.08993 * 109.46111 * 180.77971 * 4 2 1 36 36 H 1.09000 * 109.47082 * 50.00446 * 6 5 4 37 37 H 1.09004 * 109.47143 * 290.00401 * 6 5 4 38 38 H 0.96999 * 120.00043 * 0.02562 * 9 7 6 39 39 H 0.97000 * 119.99719 * 359.97438 * 13 12 10 40 40 H 1.09001 * 109.46266 * 58.26795 * 18 5 4 41 41 H 1.08992 * 109.46241 * 178.24294 * 18 5 4 42 42 H 1.09004 * 109.50549 * 299.24240 * 19 18 5 43 43 H 1.08993 * 109.53683 * 179.14181 * 19 18 5 44 44 H 0.96999 * 120.00127 * 334.99992 * 22 20 2 45 45 H 1.08996 * 109.47137 * 64.99321 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0410 -0.7234 1.2481 5 7 1.5675 -2.1134 1.2379 6 6 1.9223 -2.7996 2.4875 7 6 1.2171 -4.1300 2.5476 8 8 0.4908 -4.4731 1.6388 9 7 1.3943 -4.9391 3.6109 10 6 0.7523 -6.1493 3.6659 11 1 0.1050 -6.4544 2.8571 12 6 0.9345 -6.9831 4.7624 13 7 1.7218 -6.6116 5.7468 14 14 0.0604 -8.6323 4.8370 15 1 0.4186 -9.3256 6.1004 16 1 -1.4082 -8.4167 4.7904 17 1 0.4754 -9.4653 3.6798 18 6 2.0847 -2.8420 0.0724 19 6 1.5750 -2.1818 -1.2107 20 6 2.0412 -0.7238 -1.2487 21 1 3.1306 -0.6901 -1.2689 22 7 1.5088 -0.0693 -2.4463 23 6 2.1680 -0.1684 -3.6178 24 8 3.2020 -0.7991 -3.6803 25 6 1.6206 0.5054 -4.8497 26 9 2.4092 0.1681 -5.9549 27 9 0.3056 0.0808 -5.0681 28 1 -0.3633 0.5122 0.8909 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3633 -1.0277 -0.0018 31 1 3.1316 1.4407 -0.0017 32 1 1.6774 1.9567 -0.8890 33 1 1.6803 1.9557 0.8909 34 1 1.6670 -0.2189 2.1390 35 1 3.1308 -0.7109 1.2544 36 1 1.6177 -2.1881 3.3369 37 1 3.0003 -2.9578 2.5217 38 1 1.9754 -4.6648 4.3375 39 1 2.1760 -5.7554 5.7078 40 1 3.1744 -2.8196 0.0843 41 1 1.7423 -3.8761 0.1094 42 1 0.4857 -2.2161 -1.2298 43 1 1.9710 -2.7131 -2.0761 44 1 0.6820 0.4354 -2.3962 45 1 1.6348 1.5862 -4.7094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724967116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:56 Heat of formation + Delta-G solvation = -193.283097 kcal Electronic energy + Delta-G solvation = -29809.882970 eV Core-core repulsion = 25303.962896 eV Total energy + Delta-G solvation = -4505.920075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.19659 -48.24196 -41.75290 -40.51204 -39.58340 -36.85076 -36.07403 -34.53422 -33.25653 -32.68439 -29.61155 -28.68093 -28.15411 -27.15915 -26.15121 -24.23701 -22.84448 -22.00966 -21.31406 -20.24907 -19.94283 -19.21942 -18.79583 -18.50409 -17.95514 -17.30741 -16.96477 -16.54882 -16.46060 -15.97166 -15.93938 -15.60876 -15.40544 -15.23268 -15.10143 -14.97302 -14.62558 -14.55533 -14.33858 -14.21164 -14.03225 -13.35443 -13.31748 -13.22593 -12.90033 -12.83700 -12.73553 -12.63552 -12.49417 -12.34026 -11.92878 -11.87863 -11.79115 -11.65313 -11.45570 -11.43745 -11.07468 -10.40773 -10.22302 -10.07665 -9.24705 -8.91787 -6.05323 0.98846 1.51016 1.52442 1.53742 1.81572 2.02424 2.38402 2.66072 2.86931 3.04481 3.16630 3.22744 3.45456 3.57809 3.67551 3.76591 3.80226 4.01436 4.14624 4.19582 4.29339 4.30738 4.36024 4.40166 4.58460 4.64554 4.70174 4.78504 4.85067 4.95759 5.03157 5.06234 5.09818 5.20244 5.25052 5.36292 5.59729 5.61432 5.91002 5.98151 6.13565 6.16135 6.59501 6.77015 6.79129 7.46173 7.95783 8.56180 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.002456 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.428547 B =11398.548455 C =12074.579202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.057 4.057 3 C -0.135 4.135 4 C 0.063 3.937 5 N -0.522 5.522 6 C 0.057 3.943 7 C 0.446 3.554 8 O -0.607 6.607 9 N -0.589 5.589 10 C -0.407 4.407 11 H 0.072 0.928 12 C -0.043 4.043 13 N -0.919 5.919 14 Si 1.132 2.868 15 H -0.273 1.273 16 H -0.272 1.272 17 H -0.275 1.275 18 C 0.061 3.939 19 C -0.115 4.115 20 C 0.162 3.838 21 H 0.078 0.922 22 N -0.687 5.687 23 C 0.467 3.533 24 O -0.552 6.552 25 C 0.262 3.738 26 F -0.195 7.195 27 F -0.192 7.192 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.041 0.959 36 H 0.116 0.884 37 H 0.064 0.936 38 H 0.384 0.616 39 H 0.259 0.741 40 H 0.027 0.973 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.420 0.580 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.410 23.370 -13.878 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.058 4.058 3 C -0.193 4.193 4 C -0.065 4.065 5 N -0.247 5.247 6 C -0.074 4.074 7 C 0.234 3.766 8 O -0.492 6.492 9 N -0.229 5.229 10 C -0.536 4.536 11 H 0.090 0.910 12 C -0.241 4.241 13 N -0.558 5.558 14 Si 0.952 3.048 15 H -0.197 1.197 16 H -0.198 1.198 17 H -0.200 1.200 18 C -0.068 4.068 19 C -0.154 4.154 20 C 0.057 3.943 21 H 0.096 0.904 22 N -0.341 5.341 23 C 0.250 3.750 24 O -0.429 6.429 25 C 0.206 3.794 26 F -0.176 7.176 27 F -0.174 7.174 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.059 0.941 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.218 0.782 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.260 0.740 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.083 21.329 -13.665 25.331 hybrid contribution 1.139 0.959 -0.536 1.583 sum 1.056 22.287 -14.201 26.448 Atomic orbital electron populations 1.21817 0.92861 1.02190 1.02435 1.20796 0.97400 0.96004 0.91636 1.21830 1.01083 0.92711 1.03677 1.22314 0.97823 0.87127 0.99194 1.61475 1.60459 1.02288 1.00448 1.21736 0.98062 0.92771 0.94824 1.20788 0.85472 0.87466 0.82920 1.90476 1.42778 1.76711 1.39231 1.42005 1.43688 1.17436 1.19778 1.20485 1.28308 0.96376 1.08451 0.90995 1.27766 0.98000 1.07472 0.90860 1.70970 1.28876 1.23085 1.32874 0.82651 0.75228 0.70080 0.76866 1.19728 1.19782 1.20025 1.22000 0.95867 0.98737 0.90167 1.21837 1.01959 0.95724 0.95886 1.21021 0.98461 0.90856 0.83963 0.90417 1.45919 1.27430 1.52982 1.07728 1.21667 0.85302 0.81650 0.86418 1.90822 1.25253 1.41420 1.85377 1.22058 0.73012 1.02959 0.81406 1.93029 1.74730 1.94789 1.55081 1.93065 1.36480 1.92596 1.95226 0.91435 0.91213 0.93427 0.92640 0.90648 0.90645 0.88389 0.94097 0.86562 0.91797 0.78230 0.92980 0.95532 0.92058 0.90898 0.92998 0.73977 0.78589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.83 71.98 0.56 -1.64 16 2 C -0.06 -0.92 0.57 -52.13 -0.03 -0.95 16 3 C -0.14 -1.34 8.35 71.98 0.60 -0.74 16 4 C 0.06 1.29 4.18 86.33 0.36 1.65 16 5 N -0.52 -15.65 3.68 -900.91 -3.32 -18.97 16 6 C 0.06 1.89 5.45 85.55 0.47 2.36 16 7 C 0.45 20.91 7.46 87.66 0.65 21.56 16 8 O -0.61 -33.25 13.90 -3.07 -0.04 -33.29 16 9 N -0.59 -29.88 5.28 -306.98 -1.62 -31.50 16 10 C -0.41 -23.33 9.68 84.04 0.81 -22.51 16 11 H 0.07 4.44 7.16 -2.91 -0.02 4.42 16 12 C -0.04 -2.34 5.50 84.93 0.47 -1.88 16 13 N -0.92 -51.48 13.68 21.66 0.30 -51.18 16 14 Si 1.13 48.99 29.92 68.60 2.05 51.04 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 18 C 0.06 2.01 5.11 86.32 0.44 2.45 16 19 C -0.12 -3.21 5.32 30.65 0.16 -3.05 16 20 C 0.16 3.25 1.63 45.07 0.07 3.32 16 21 H 0.08 1.80 7.58 -2.38 -0.02 1.79 16 22 N -0.69 -10.24 4.37 -442.14 -1.93 -12.17 16 23 C 0.47 8.73 7.60 87.66 0.67 9.40 16 24 O -0.55 -16.01 16.28 -3.04 -0.05 -16.06 16 25 C 0.26 3.14 5.72 71.24 0.41 3.54 16 26 F -0.20 -3.76 16.95 44.97 0.76 -2.99 16 27 F -0.19 -2.75 17.32 44.97 0.78 -1.97 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 0.73 6.42 -2.39 -0.02 0.72 16 30 H 0.05 1.14 6.01 -2.39 -0.01 1.13 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.49 7.63 -2.39 -0.02 0.47 16 33 H 0.07 0.61 8.14 -2.38 -0.02 0.60 16 34 H 0.10 1.70 8.02 -2.39 -0.02 1.68 16 35 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.12 3.23 7.99 -2.39 -0.02 3.21 16 37 H 0.06 1.92 8.12 -2.38 -0.02 1.90 16 38 H 0.38 17.83 6.73 -92.71 -0.62 17.21 16 39 H 0.26 14.01 6.77 -92.71 -0.63 13.38 16 40 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 2.60 5.78 -2.39 -0.01 2.59 16 42 H 0.07 2.14 6.58 -2.38 -0.02 2.12 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.42 3.63 6.67 -92.71 -0.62 3.01 16 45 H 0.20 0.00 8.14 -2.39 -0.02 -0.02 16 Total: -1.00 -79.07 365.55 2.51 -76.55 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -0.06 Total: 27.04 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 5.65 Total: 13.51 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -6.57 Total: -113.82 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -0.09 Total: -49.36 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 1.54 Total: -4.97 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.05 Total: 51.04 kcal Total: -79.07 2.51 -76.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724967116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.730 kcal (2) G-P(sol) polarization free energy of solvation -79.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds