Wall clock time and date at job start Tue Mar 31 2020 18:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.53841 * 2 1 4 4 C 1.53035 * 109.50384 * 239.89616 * 2 1 3 5 5 N 1.46844 * 109.52494 * 299.24536 * 4 2 1 6 6 C 1.46897 * 111.00090 * 174.16001 * 5 4 2 7 7 C 1.50699 * 109.47260 * 58.16087 * 6 5 4 8 8 O 1.21298 * 119.99871 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00185 * 180.02562 * 7 6 5 10 10 C 1.37103 * 120.00091 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99887 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99924 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00231 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99946 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47158 * 90.00040 * 14 12 10 16 16 H 1.48501 * 109.47338 * 210.00154 * 14 12 10 17 17 H 1.48502 * 109.46990 * 330.00358 * 14 12 10 18 18 C 1.46854 * 111.19703 * 298.25280 * 5 4 2 19 19 C 1.53037 * 109.51886 * 61.74789 * 18 5 4 20 20 C 1.53124 * 109.49854 * 120.09617 * 2 1 3 21 21 H 1.08999 * 109.52030 * 182.18419 * 20 2 1 22 22 N 1.46495 * 109.52729 * 302.38153 * 20 2 1 23 23 C 1.34775 * 120.00218 * 204.68685 * 22 20 2 24 24 O 1.21281 * 119.99707 * 359.97438 * 23 22 20 25 25 C 1.50698 * 119.99931 * 179.97438 * 23 22 20 26 26 F 1.39901 * 109.47218 * 184.99661 * 25 23 22 27 27 F 1.39908 * 109.47186 * 304.99735 * 25 23 22 28 28 H 1.09004 * 109.47291 * 299.90606 * 1 2 3 29 29 H 1.09007 * 109.47061 * 59.90226 * 1 2 3 30 30 H 1.08995 * 109.47411 * 179.90231 * 1 2 3 31 31 H 1.09006 * 109.47097 * 180.09536 * 3 2 1 32 32 H 1.08995 * 109.46834 * 300.09432 * 3 2 1 33 33 H 1.08998 * 109.47092 * 60.09564 * 3 2 1 34 34 H 1.09002 * 109.46466 * 179.22859 * 4 2 1 35 35 H 1.09002 * 109.45306 * 59.25542 * 4 2 1 36 36 H 1.08998 * 109.47712 * 178.16045 * 6 5 4 37 37 H 1.09003 * 109.47441 * 298.16361 * 6 5 4 38 38 H 0.97002 * 120.00429 * 359.97438 * 9 7 6 39 39 H 0.96998 * 119.99925 * 180.02562 * 13 12 10 40 40 H 1.08994 * 109.46310 * 301.73015 * 18 5 4 41 41 H 1.09004 * 109.45830 * 181.75702 * 18 5 4 42 42 H 1.09000 * 109.50480 * 180.88135 * 19 18 5 43 43 H 1.08992 * 109.50737 * 60.75564 * 19 18 5 44 44 H 0.97006 * 119.99703 * 24.67843 * 22 20 2 45 45 H 1.08995 * 109.47208 * 64.99494 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 1.5674 -2.1135 -1.2378 6 6 1.9222 -2.7997 -2.4873 7 6 3.4170 -2.7612 -2.6746 8 8 4.1179 -2.2162 -1.8482 9 7 3.9750 -3.3324 -3.7603 10 6 5.3350 -3.2978 -3.9305 11 1 5.9591 -2.8126 -3.1946 12 6 5.9104 -3.8872 -5.0496 13 7 5.1510 -4.4781 -5.9447 14 14 7.7633 -3.8395 -5.2818 15 1 8.3727 -5.0352 -4.6461 16 1 8.0804 -3.8343 -6.7325 17 1 8.3097 -2.6111 -4.6512 18 6 2.0845 -2.8421 -0.0723 19 6 1.5747 -2.1818 1.2108 20 6 2.0411 -0.7238 1.2488 21 1 3.1304 -0.6903 1.2690 22 7 1.5075 -0.0702 2.4464 23 6 2.1627 -0.1745 3.6196 24 8 3.1938 -0.8098 3.6839 25 6 1.6140 0.4984 4.8514 26 9 2.5179 0.3453 5.9081 27 9 1.4243 1.8603 4.5935 28 1 -0.3634 0.5124 0.8908 29 1 -0.3633 0.5154 -0.8892 30 1 -0.3634 -1.0276 -0.0018 31 1 3.1317 1.4406 -0.0017 32 1 1.6775 1.9566 -0.8891 33 1 1.6803 1.9556 0.8908 34 1 3.1308 -0.7112 -1.2543 35 1 1.6668 -0.2190 -2.1388 36 1 1.5885 -3.8363 -2.4400 37 1 1.4380 -2.3000 -3.3264 38 1 3.4146 -3.7686 -4.4211 39 1 5.5527 -4.8898 -6.7257 40 1 3.1741 -2.8197 -0.0841 41 1 1.7420 -3.8763 -0.1093 42 1 1.9713 -2.7133 2.0759 43 1 0.4855 -2.2160 1.2298 44 1 0.6826 0.4377 2.3950 45 1 0.6607 0.0433 5.1198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724967154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:01 Heat of formation + Delta-G solvation = -168.420889 kcal Electronic energy + Delta-G solvation = -30188.339937 eV Core-core repulsion = 25683.497968 eV Total energy + Delta-G solvation = -4504.841969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.47709 -47.50399 -40.68316 -39.24853 -37.88493 -35.29627 -33.91300 -33.45808 -31.62103 -31.25508 -28.62306 -27.33950 -27.21359 -26.04632 -24.57317 -22.97912 -21.40818 -21.04959 -19.32097 -19.26542 -18.33897 -18.06310 -17.89511 -17.60472 -16.23083 -16.06003 -15.61632 -15.27856 -14.88341 -14.74736 -14.61834 -14.32276 -14.28242 -13.94392 -13.83974 -13.70337 -13.62166 -13.47025 -13.17595 -12.98091 -12.45219 -12.27821 -12.10015 -11.98839 -11.76169 -11.47686 -11.42831 -11.24552 -11.19003 -10.80080 -10.66838 -10.45772 -10.44660 -10.34673 -10.27952 -10.03416 -9.50477 -9.27039 -9.23142 -8.03308 -7.43513 -6.48670 -3.90017 1.91989 2.35072 3.12627 3.22651 3.28312 3.46629 3.78939 3.81466 4.12325 4.20924 4.25453 4.35671 4.55368 4.79093 4.89331 5.00410 5.17740 5.28892 5.33810 5.40672 5.54293 5.58891 5.72172 5.76024 5.82733 5.89450 5.94926 6.00588 6.02016 6.12191 6.14635 6.16710 6.24014 6.29650 6.43113 6.55744 6.71084 7.00425 7.31515 7.41323 7.48428 7.65532 7.97995 8.52292 9.09970 9.45762 9.96118 10.67775 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.002715 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.061943 B =10311.107144 C =10938.167626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 C -0.142 4.142 4 C 0.046 3.954 5 N -0.511 5.511 6 C 0.042 3.958 7 C 0.405 3.595 8 O -0.593 6.593 9 N -0.555 5.555 10 C -0.302 4.302 11 H 0.103 0.897 12 C 0.025 3.975 13 N -0.898 5.898 14 Si 0.929 3.071 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.044 3.956 19 C -0.121 4.121 20 C 0.154 3.846 21 H 0.094 0.906 22 N -0.704 5.704 23 C 0.468 3.532 24 O -0.497 6.497 25 C 0.256 3.744 26 F -0.177 7.177 27 F -0.190 7.190 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.393 0.607 39 H 0.273 0.727 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.403 0.597 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 8.609 14.254 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.065 4.065 3 C -0.199 4.199 4 C -0.082 4.082 5 N -0.234 5.234 6 C -0.090 4.090 7 C 0.190 3.810 8 O -0.480 6.480 9 N -0.190 5.190 10 C -0.432 4.432 11 H 0.121 0.879 12 C -0.178 4.178 13 N -0.539 5.539 14 Si 0.756 3.244 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.194 1.194 18 C -0.084 4.084 19 C -0.160 4.160 20 C 0.051 3.949 21 H 0.112 0.888 22 N -0.357 5.357 23 C 0.249 3.751 24 O -0.371 6.371 25 C 0.199 3.801 26 F -0.158 7.158 27 F -0.171 7.171 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.226 0.774 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.239 0.761 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.875 8.442 14.707 21.911 hybrid contribution 1.082 -0.010 -0.686 1.281 sum -12.792 8.432 14.022 20.769 Atomic orbital electron populations 1.21848 0.94016 1.02937 1.00452 1.20825 0.96350 0.95078 0.94272 1.21846 1.01651 0.94884 1.01568 1.22433 1.02343 0.88006 0.95448 1.62449 1.57304 1.02206 1.01443 1.22028 0.93290 1.00387 0.93310 1.21108 0.90466 0.85107 0.84281 1.90402 1.63699 1.49356 1.44586 1.42062 1.08160 1.48573 1.20247 1.19718 0.82481 1.34210 1.06813 0.87950 1.25285 1.00556 0.96429 0.95498 1.69607 1.36114 1.36592 1.11589 0.85870 0.82178 0.78955 0.77383 1.20333 1.20849 1.19394 1.22158 1.00833 0.96639 0.88791 1.21957 1.01360 0.94548 0.98136 1.21236 0.99735 0.91887 0.82030 0.88839 1.46140 1.27695 1.53335 1.08498 1.21027 0.85752 0.83011 0.85355 1.90858 1.22056 1.40074 1.84081 1.21708 0.93800 0.79129 0.85456 1.93064 1.70380 1.95304 1.57023 1.93055 1.95781 1.33876 1.94387 0.94221 0.92413 0.90692 0.92299 0.92182 0.92810 0.89275 0.91348 0.89344 0.89283 0.77383 0.91746 0.91100 0.91310 0.91479 0.91087 0.76080 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 7.83 37.16 0.29 -0.97 16 2 C -0.06 -0.75 0.57 -154.43 -0.09 -0.84 16 3 C -0.14 -1.55 8.35 37.16 0.31 -1.24 16 4 C 0.05 0.69 3.69 -3.84 -0.01 0.68 16 5 N -0.51 -7.67 4.14 -236.11 -0.98 -8.64 16 6 C 0.04 0.69 5.86 -4.98 -0.03 0.66 16 7 C 0.40 8.90 7.20 -10.99 -0.08 8.82 16 8 O -0.59 -14.67 11.20 5.54 0.06 -14.61 16 9 N -0.56 -13.53 5.29 -10.96 -0.06 -13.59 16 10 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 11 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 12 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 13 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 14 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 C 0.04 0.68 5.09 -3.83 -0.02 0.66 16 19 C -0.12 -1.54 5.32 -26.65 -0.14 -1.68 16 20 C 0.15 1.93 1.63 -67.80 -0.11 1.82 16 21 H 0.09 1.52 7.59 -51.93 -0.39 1.12 16 22 N -0.70 -6.80 4.37 -53.68 -0.23 -7.04 16 23 C 0.47 5.30 7.60 -10.99 -0.08 5.22 16 24 O -0.50 -8.06 16.29 5.56 0.09 -7.97 16 25 C 0.26 2.08 5.72 36.00 0.21 2.29 16 26 F -0.18 -1.97 16.95 2.25 0.04 -1.93 16 27 F -0.19 -1.64 17.32 2.25 0.04 -1.60 16 28 H 0.04 0.28 6.41 -51.93 -0.33 -0.05 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.76 6.01 -51.93 -0.31 0.45 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.50 7.62 -51.93 -0.40 0.11 16 34 H 0.09 1.71 5.36 -51.93 -0.28 1.44 16 35 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 36 H 0.09 1.34 8.06 -51.93 -0.42 0.92 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.07 1.38 6.00 -51.93 -0.31 1.07 16 41 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.78 6.58 -51.93 -0.34 0.44 16 44 H 0.40 2.74 6.66 -40.82 -0.27 2.47 16 45 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -31.71 362.21 -6.15 -37.85 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -6.27 Total: 11.93 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 0.00 Total: 7.60 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.55 Total: -52.56 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.15 Total: -22.58 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.08 Total: -3.53 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.71 -6.15 -37.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724967154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.566 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds