Wall clock time and date at job start Tue Mar 31 2020 18:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.53841 * 2 1 4 4 C 1.53035 * 109.50384 * 239.89616 * 2 1 3 5 5 N 1.46844 * 109.52494 * 299.24536 * 4 2 1 6 6 C 1.46897 * 111.00090 * 174.16001 * 5 4 2 7 7 C 1.50699 * 109.47260 * 58.16087 * 6 5 4 8 8 O 1.21298 * 119.99871 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00185 * 180.02562 * 7 6 5 10 10 C 1.37103 * 120.00091 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99887 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99924 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00231 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99946 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47158 * 90.00040 * 14 12 10 16 16 H 1.48501 * 109.47338 * 210.00154 * 14 12 10 17 17 H 1.48502 * 109.46990 * 330.00358 * 14 12 10 18 18 C 1.46854 * 111.19703 * 298.25280 * 5 4 2 19 19 C 1.53037 * 109.51886 * 61.74789 * 18 5 4 20 20 C 1.53124 * 109.49854 * 120.09617 * 2 1 3 21 21 H 1.08999 * 109.52030 * 182.18419 * 20 2 1 22 22 N 1.46495 * 109.52729 * 302.38153 * 20 2 1 23 23 C 1.34775 * 120.00218 * 204.68685 * 22 20 2 24 24 O 1.21281 * 119.99707 * 359.97438 * 23 22 20 25 25 C 1.50698 * 119.99931 * 179.97438 * 23 22 20 26 26 F 1.39901 * 109.47218 * 184.99661 * 25 23 22 27 27 F 1.39908 * 109.47186 * 304.99735 * 25 23 22 28 28 H 1.09004 * 109.47291 * 299.90606 * 1 2 3 29 29 H 1.09007 * 109.47061 * 59.90226 * 1 2 3 30 30 H 1.08995 * 109.47411 * 179.90231 * 1 2 3 31 31 H 1.09006 * 109.47097 * 180.09536 * 3 2 1 32 32 H 1.08995 * 109.46834 * 300.09432 * 3 2 1 33 33 H 1.08998 * 109.47092 * 60.09564 * 3 2 1 34 34 H 1.09002 * 109.46466 * 179.22859 * 4 2 1 35 35 H 1.09002 * 109.45306 * 59.25542 * 4 2 1 36 36 H 1.08998 * 109.47712 * 178.16045 * 6 5 4 37 37 H 1.09003 * 109.47441 * 298.16361 * 6 5 4 38 38 H 0.97002 * 120.00429 * 359.97438 * 9 7 6 39 39 H 0.96998 * 119.99925 * 180.02562 * 13 12 10 40 40 H 1.08994 * 109.46310 * 301.73015 * 18 5 4 41 41 H 1.09004 * 109.45830 * 181.75702 * 18 5 4 42 42 H 1.09000 * 109.50480 * 180.88135 * 19 18 5 43 43 H 1.08992 * 109.50737 * 60.75564 * 19 18 5 44 44 H 0.97006 * 119.99703 * 24.67843 * 22 20 2 45 45 H 1.08995 * 109.47208 * 64.99494 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 1.5674 -2.1135 -1.2378 6 6 1.9222 -2.7997 -2.4873 7 6 3.4170 -2.7612 -2.6746 8 8 4.1179 -2.2162 -1.8482 9 7 3.9750 -3.3324 -3.7603 10 6 5.3350 -3.2978 -3.9305 11 1 5.9591 -2.8126 -3.1946 12 6 5.9104 -3.8872 -5.0496 13 7 5.1510 -4.4781 -5.9447 14 14 7.7633 -3.8395 -5.2818 15 1 8.3727 -5.0352 -4.6461 16 1 8.0804 -3.8343 -6.7325 17 1 8.3097 -2.6111 -4.6512 18 6 2.0845 -2.8421 -0.0723 19 6 1.5747 -2.1818 1.2108 20 6 2.0411 -0.7238 1.2488 21 1 3.1304 -0.6903 1.2690 22 7 1.5075 -0.0702 2.4464 23 6 2.1627 -0.1745 3.6196 24 8 3.1938 -0.8098 3.6839 25 6 1.6140 0.4984 4.8514 26 9 2.5179 0.3453 5.9081 27 9 1.4243 1.8603 4.5935 28 1 -0.3634 0.5124 0.8908 29 1 -0.3633 0.5154 -0.8892 30 1 -0.3634 -1.0276 -0.0018 31 1 3.1317 1.4406 -0.0017 32 1 1.6775 1.9566 -0.8891 33 1 1.6803 1.9556 0.8908 34 1 3.1308 -0.7112 -1.2543 35 1 1.6668 -0.2190 -2.1388 36 1 1.5885 -3.8363 -2.4400 37 1 1.4380 -2.3000 -3.3264 38 1 3.4146 -3.7686 -4.4211 39 1 5.5527 -4.8898 -6.7257 40 1 3.1741 -2.8197 -0.0841 41 1 1.7420 -3.8763 -0.1093 42 1 1.9713 -2.7133 2.0759 43 1 0.4855 -2.2160 1.2298 44 1 0.6826 0.4377 2.3950 45 1 0.6607 0.0433 5.1198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724967154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:00 Heat of formation + Delta-G solvation = -192.675608 kcal Electronic energy + Delta-G solvation = -30189.391700 eV Core-core repulsion = 25683.497968 eV Total energy + Delta-G solvation = -4505.893732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.18261 -48.22557 -41.79473 -40.59935 -39.31954 -36.67922 -35.69851 -34.52573 -33.35691 -32.65600 -29.58440 -28.57122 -28.12965 -27.26366 -26.25508 -24.18223 -22.62708 -22.01326 -21.03467 -20.23424 -19.89849 -19.18434 -18.73830 -18.49426 -17.76202 -17.18565 -16.84243 -16.48650 -16.38326 -16.00166 -15.90191 -15.65759 -15.53439 -15.15700 -15.01386 -14.92993 -14.55838 -14.44421 -14.30886 -14.07498 -13.68601 -13.44756 -13.35573 -13.19210 -13.00215 -12.85426 -12.70953 -12.47571 -12.46137 -12.40395 -12.16206 -12.09677 -11.74685 -11.58016 -11.40281 -11.31805 -11.01633 -10.92901 -10.27097 -10.00901 -9.00057 -8.48855 -5.98604 1.02310 1.32768 1.37436 1.49368 1.51705 2.00613 2.26114 2.87723 2.97257 3.05997 3.17098 3.26419 3.50910 3.59904 3.71361 3.79794 3.91654 4.15234 4.32902 4.36195 4.39862 4.45128 4.46929 4.67893 4.68722 4.75241 4.85110 4.87991 4.93424 4.96946 5.09133 5.17855 5.21728 5.26728 5.31911 5.35110 5.42115 5.65527 5.88576 6.04397 6.09547 6.17626 6.56938 6.84731 7.09818 7.53598 8.09438 8.66309 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.002715 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.061943 B =10311.107144 C =10938.167626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.056 4.056 3 C -0.139 4.139 4 C 0.046 3.954 5 N -0.489 5.489 6 C 0.049 3.951 7 C 0.406 3.594 8 O -0.623 6.623 9 N -0.570 5.570 10 C -0.333 4.333 11 H 0.074 0.926 12 C -0.010 4.010 13 N -0.917 5.917 14 Si 0.988 3.012 15 H -0.272 1.272 16 H -0.268 1.268 17 H -0.276 1.276 18 C 0.045 3.955 19 C -0.110 4.110 20 C 0.160 3.840 21 H 0.044 0.956 22 N -0.684 5.684 23 C 0.463 3.537 24 O -0.557 6.557 25 C 0.265 3.735 26 F -0.196 7.196 27 F -0.190 7.190 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.021 0.979 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.103 0.897 44 H 0.422 0.578 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.917 9.398 14.915 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.057 4.057 3 C -0.197 4.197 4 C -0.082 4.082 5 N -0.210 5.210 6 C -0.083 4.083 7 C 0.193 3.807 8 O -0.511 6.511 9 N -0.207 5.207 10 C -0.463 4.463 11 H 0.092 0.908 12 C -0.210 4.210 13 N -0.558 5.558 14 Si 0.812 3.188 15 H -0.198 1.198 16 H -0.193 1.193 17 H -0.201 1.201 18 C -0.084 4.084 19 C -0.149 4.149 20 C 0.055 3.945 21 H 0.062 0.938 22 N -0.338 5.338 23 C 0.246 3.754 24 O -0.434 6.434 25 C 0.209 3.791 26 F -0.177 7.177 27 F -0.171 7.171 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.039 0.961 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.121 0.879 44 H 0.263 0.737 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -17.197 9.260 15.369 24.853 hybrid contribution 2.094 -0.202 -0.848 2.268 sum -15.103 9.058 14.521 22.826 Atomic orbital electron populations 1.21816 0.90878 1.03441 1.02500 1.20756 0.98570 0.94637 0.91764 1.21842 0.99845 0.94773 1.03261 1.22380 0.99452 0.88550 0.97837 1.62573 1.55783 1.02002 1.00685 1.22170 0.88803 1.02421 0.94913 1.22275 0.92908 0.82810 0.82685 1.90436 1.65457 1.49865 1.45324 1.42130 1.07332 1.49888 1.21339 1.19601 0.83920 1.35629 1.07143 0.90800 1.25975 1.04456 0.95749 0.94856 1.69657 1.37503 1.36797 1.11848 0.85005 0.77361 0.78583 0.77861 1.19786 1.19292 1.20103 1.22134 0.97901 0.97933 0.90440 1.21859 1.02962 0.94011 0.96039 1.20919 0.97159 0.92603 0.83778 0.93783 1.45895 1.28028 1.52647 1.07203 1.21766 0.84870 0.82245 0.86539 1.90845 1.24663 1.42792 1.85096 1.22031 0.95222 0.78947 0.82920 1.93029 1.71582 1.95399 1.57675 1.93059 1.95704 1.34025 1.94300 0.91030 0.91630 0.90896 0.95244 0.90947 0.90591 0.94225 0.90601 0.87060 0.86802 0.76948 0.91242 0.96099 0.90112 0.92417 0.87851 0.73746 0.78527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 7.83 71.98 0.56 -1.31 16 2 C -0.06 -1.24 0.57 -52.13 -0.03 -1.27 16 3 C -0.14 -2.91 8.35 71.98 0.60 -2.31 16 4 C 0.05 1.40 3.69 86.33 0.32 1.72 16 5 N -0.49 -14.26 4.14 -900.93 -3.73 -17.99 16 6 C 0.05 1.57 5.86 85.56 0.50 2.07 16 7 C 0.41 18.51 7.20 87.66 0.63 19.14 16 8 O -0.62 -32.91 11.20 -3.09 -0.03 -32.95 16 9 N -0.57 -28.76 5.29 -306.97 -1.62 -30.38 16 10 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 11 H 0.07 4.53 7.16 -2.91 -0.02 4.51 16 12 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 13 N -0.92 -49.36 13.05 21.66 0.28 -49.08 16 14 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 C 0.04 1.39 5.09 86.32 0.44 1.83 16 19 C -0.11 -2.70 5.32 30.65 0.16 -2.54 16 20 C 0.16 3.99 1.63 45.08 0.07 4.07 16 21 H 0.04 1.56 7.59 -2.39 -0.02 1.54 16 22 N -0.68 -11.86 4.37 -442.15 -1.93 -13.79 16 23 C 0.46 9.99 7.60 87.66 0.67 10.66 16 24 O -0.56 -18.73 16.29 -3.03 -0.05 -18.77 16 25 C 0.27 3.55 5.72 71.24 0.41 3.96 16 26 F -0.20 -4.09 16.95 44.97 0.76 -3.33 16 27 F -0.19 -2.69 17.32 44.97 0.78 -1.91 16 28 H 0.07 0.61 6.41 -2.38 -0.02 0.59 16 29 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 1.14 6.01 -2.39 -0.01 1.13 16 31 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.23 7.62 -2.39 -0.02 1.21 16 34 H 0.04 1.64 5.36 -2.39 -0.01 1.62 16 35 H 0.08 2.16 8.12 -2.39 -0.02 2.15 16 36 H 0.11 3.16 8.06 -2.39 -0.02 3.14 16 37 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 39 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 40 H 0.02 0.87 6.00 -2.39 -0.01 0.85 16 41 H 0.08 2.29 8.06 -2.39 -0.02 2.28 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.10 1.91 6.58 -2.39 -0.02 1.90 16 44 H 0.42 3.98 6.66 -92.70 -0.62 3.36 16 45 H 0.20 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -75.95 362.21 1.80 -74.15 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -0.30 Total: 30.72 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 5.62 Total: 17.84 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -7.00 Total: -111.24 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -0.08 Total: -51.72 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 1.54 Total: -5.23 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -75.95 1.80 -74.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724967154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.526 kcal (2) G-P(sol) polarization free energy of solvation -75.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds