Wall clock time and date at job start Tue Mar 31 2020 17:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00404 * 2 1 4 4 H 1.48500 * 109.47300 * 239.99328 * 3 2 1 5 5 H 1.48496 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46968 * 119.99644 * 3 2 1 7 7 C 1.38818 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99946 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99770 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47250 * 179.97438 * 10 9 7 12 12 C 1.31002 * 120.00121 * 126.68492 * 11 10 9 13 13 C 1.50702 * 119.99985 * 6.65491 * 12 11 10 14 14 N 1.46495 * 109.47094 * 127.55744 * 13 12 11 15 15 C 1.34775 * 120.00277 * 180.02562 * 14 13 12 16 16 O 1.21277 * 119.99582 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00042 * 180.02562 * 15 14 13 18 18 H 1.08995 * 109.50931 * 31.77415 * 17 15 14 19 19 C 1.53095 * 109.54138 * 271.66169 * 17 15 14 20 20 O 1.43013 * 109.26345 * 183.19657 * 19 17 15 21 21 C 1.43011 * 113.73467 * 58.67065 * 20 19 17 22 22 C 1.53100 * 109.26346 * 301.33337 * 21 20 19 23 23 N 1.47009 * 109.25703 * 56.84863 * 22 21 20 24 24 C 1.46900 * 111.00226 * 177.61165 * 23 22 21 25 25 C 1.53000 * 109.47034 * 286.98183 * 24 23 22 26 26 F 1.39898 * 109.46843 * 305.57150 * 25 24 23 27 27 F 1.39901 * 109.47127 * 65.56813 * 25 24 23 28 28 H 0.97001 * 119.99741 * 0.02562 * 1 2 3 29 29 H 0.96992 * 120.00106 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46990 * 59.99922 * 10 9 7 31 31 H 1.08998 * 109.47058 * 300.00167 * 10 9 7 32 32 H 1.08002 * 119.99961 * 306.68905 * 11 10 9 33 33 H 1.07998 * 120.00213 * 186.65884 * 12 11 10 34 34 H 1.09006 * 109.46844 * 7.56019 * 13 12 11 35 35 H 1.08997 * 109.47189 * 247.56015 * 13 12 11 36 36 H 0.97008 * 120.00116 * 0.02562 * 14 13 12 37 37 H 1.09002 * 109.50871 * 303.13759 * 19 17 15 38 38 H 1.09000 * 109.50406 * 63.26364 * 19 17 15 39 39 H 1.09005 * 109.50760 * 181.40046 * 21 20 19 40 40 H 1.08997 * 109.50820 * 61.26733 * 21 20 19 41 41 H 1.09008 * 109.50539 * 296.91544 * 22 21 20 42 42 H 1.09000 * 109.54538 * 176.81104 * 22 21 20 43 43 H 1.09008 * 109.47013 * 46.97860 * 24 23 22 44 44 H 1.08997 * 109.47227 * 166.98108 * 24 23 22 45 45 H 1.09002 * 109.47054 * 185.56838 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1042 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1039 1.6962 1.2126 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0010 9 7 1.3253 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0785 -4.8023 0.0012 12 6 1.1676 -5.7408 -0.9084 13 6 2.3347 -5.7579 -1.8616 14 7 2.9655 -7.0799 -1.8375 15 6 4.0371 -7.3296 -2.6159 16 8 4.4789 -6.4599 -3.3365 17 6 4.6856 -8.6897 -2.5915 18 1 3.9299 -9.4498 -2.3935 19 6 5.7509 -8.7295 -1.4927 20 8 6.4135 -9.9964 -1.5236 21 6 7.0426 -10.2867 -2.7747 22 6 5.9904 -10.2627 -3.8866 23 7 5.3196 -8.9546 -3.8912 24 6 4.3395 -8.8694 -4.9821 25 6 5.0735 -8.7344 -6.3178 26 9 5.9533 -7.6484 -6.2586 27 9 5.7948 -9.9055 -6.5740 28 1 -0.4850 0.8401 -0.0004 29 1 0.3554 -2.3880 0.0005 30 1 2.6844 -3.7147 0.8905 31 1 2.6844 -3.7147 -0.8894 32 1 0.3031 -4.8494 0.7515 33 1 0.4046 -6.5022 -0.9753 34 1 3.0612 -5.0032 -1.5601 35 1 1.9832 -5.5414 -2.8704 36 1 2.6119 -7.7756 -1.2614 37 1 6.4774 -7.9345 -1.6611 38 1 5.2769 -8.5902 -0.5211 39 1 7.5027 -11.2738 -2.7303 40 1 7.8066 -9.5371 -2.9804 41 1 5.2555 -11.0480 -3.7093 42 1 6.4738 -10.4274 -4.8496 43 1 3.7285 -9.7721 -4.9929 44 1 3.7003 -7.9999 -4.8293 45 1 4.3489 -8.5721 -7.1158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754153720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:49 Heat of formation + Delta-G solvation = -127.722739 kcal Electronic energy + Delta-G solvation = -29045.823749 eV Core-core repulsion = 24542.746585 eV Total energy + Delta-G solvation = -4503.077164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.17964 -47.11959 -40.80565 -38.95219 -36.74587 -36.09321 -34.56035 -33.00399 -31.86076 -30.79887 -30.38756 -27.17312 -26.41654 -25.29350 -24.44185 -22.76749 -22.51096 -21.55412 -20.39755 -18.93099 -18.01955 -17.70733 -17.29348 -17.11650 -16.81029 -16.66926 -16.42428 -16.02900 -15.60167 -15.15721 -14.95647 -14.67907 -14.43446 -14.29946 -14.08189 -13.98709 -13.54215 -13.47318 -13.26222 -13.07271 -12.96721 -12.65882 -12.64354 -12.32264 -12.15576 -11.87022 -11.77344 -11.49123 -10.97479 -10.87606 -10.79055 -10.47777 -10.24321 -10.07827 -9.87634 -9.78061 -9.25681 -9.06602 -8.93996 -8.65285 -6.94176 -5.78261 -3.07656 2.16420 2.35662 2.87909 3.18165 3.45269 3.49191 3.49890 3.50826 3.57365 3.91461 4.13207 4.39022 4.43849 4.50550 4.53394 4.60719 4.62735 4.82084 4.82331 4.97586 5.01235 5.14138 5.22873 5.23446 5.30375 5.40785 5.50724 5.54518 5.61904 5.80821 5.91907 6.16587 6.17582 6.25100 6.33935 6.49080 6.53157 6.65663 6.82283 7.08849 7.35186 7.68778 8.06137 8.40195 9.51587 10.06868 10.42151 11.44448 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.016003 B = 0.002245 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.201850 B =12471.357221 C =13048.634600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.728 5.728 10 C 0.161 3.839 11 C -0.106 4.106 12 C -0.202 4.202 13 C 0.141 3.859 14 N -0.722 5.722 15 C 0.509 3.491 16 O -0.507 6.507 17 C 0.034 3.966 18 H 0.071 0.929 19 C 0.077 3.923 20 O -0.378 6.378 21 C 0.061 3.939 22 C 0.003 3.997 23 N -0.508 5.508 24 C -0.001 4.001 25 C 0.273 3.727 26 F -0.186 7.186 27 F -0.208 7.208 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.399 0.601 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.292 -27.502 -8.670 30.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.034 3.966 11 C -0.126 4.126 12 C -0.221 4.221 13 C 0.019 3.981 14 N -0.375 5.375 15 C 0.293 3.707 16 O -0.381 6.381 17 C -0.078 4.078 18 H 0.089 0.911 19 C -0.001 4.001 20 O -0.296 6.296 21 C -0.016 4.016 22 C -0.125 4.125 23 N -0.234 5.234 24 C -0.130 4.130 25 C 0.219 3.781 26 F -0.168 7.168 27 F -0.190 7.190 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.128 0.872 43 H 0.084 0.916 44 H 0.128 0.872 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.156 -26.471 -9.131 29.460 hybrid contribution -0.842 0.122 0.168 0.867 sum 8.314 -26.348 -8.963 29.047 Atomic orbital electron populations 1.69655 1.05156 1.25874 1.57515 1.24759 0.95561 0.97774 1.02784 0.86232 0.78522 0.83279 0.77966 1.21117 1.21637 1.21184 1.19204 0.91079 0.83976 1.43079 0.91090 1.42258 1.05882 0.99486 1.89559 1.20023 0.92981 0.84775 0.98790 1.23315 0.98885 0.94700 0.95660 1.22565 0.99048 1.02201 0.98282 1.20600 0.94146 0.83855 0.99475 1.46121 1.31162 1.15620 1.44590 1.20141 0.80469 0.89295 0.80799 1.90798 1.61960 1.46172 1.39187 1.22342 0.97605 0.95668 0.92165 0.91109 1.22554 0.93600 0.86914 0.97004 1.88019 1.71018 1.36481 1.34113 1.22734 0.94242 1.02130 0.82451 1.23294 0.98000 0.88644 1.02543 1.61876 1.29105 1.31111 1.01279 1.23345 0.94618 1.04342 0.90695 1.21848 0.85877 0.72007 0.98350 1.93052 1.71732 1.54460 1.97519 1.92871 1.81058 1.49934 1.95118 0.93404 0.78167 0.95374 0.94658 0.86848 0.87094 0.89081 0.91042 0.76744 0.90988 0.87511 0.87951 0.91700 0.93541 0.87186 0.91572 0.87151 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.58 5.59 -61.09 -0.34 -18.92 16 10 C 0.16 3.21 6.37 -5.19 -0.03 3.17 16 11 C -0.11 -1.64 9.63 -36.03 -0.35 -1.99 16 12 C -0.20 -2.54 9.63 -36.03 -0.35 -2.89 16 13 C 0.14 1.85 5.77 -5.20 -0.03 1.82 16 14 N -0.72 -7.33 5.55 -61.47 -0.34 -7.67 16 15 C 0.51 5.94 5.72 -10.99 -0.06 5.88 16 16 O -0.51 -8.20 15.61 5.56 0.09 -8.11 16 17 C 0.03 0.31 2.38 -68.75 -0.16 0.15 16 18 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 19 C 0.08 0.70 6.28 37.21 0.23 0.94 16 20 O -0.38 -3.59 10.83 -35.23 -0.38 -3.97 16 21 C 0.06 0.48 7.01 37.21 0.26 0.74 16 22 C 0.00 0.02 5.33 -3.71 -0.02 0.00 16 23 N -0.51 -4.94 4.05 -227.72 -0.92 -5.86 16 24 C 0.00 -0.01 5.02 -3.82 -0.02 -0.03 16 25 C 0.27 2.28 5.56 37.16 0.21 2.49 16 26 F -0.19 -2.32 17.16 2.25 0.04 -2.28 16 27 F -0.21 -1.81 14.50 2.25 0.03 -1.77 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.38 10.27 7.66 -40.82 -0.31 9.95 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.72 5.25 -51.93 -0.27 0.45 16 32 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 33 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.09 1.43 5.27 -51.93 -0.27 1.16 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.40 2.85 8.46 -40.82 -0.35 2.51 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 42 H 0.11 0.87 5.43 -51.93 -0.28 0.59 16 43 H 0.07 0.40 8.04 -51.92 -0.42 -0.02 16 44 H 0.11 1.07 5.96 -51.93 -0.31 0.76 16 45 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -34.80 373.00 -7.48 -42.29 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.41 Total: 7.92 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.57 Total: 2.80 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.88 Total: -60.12 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.29 Total: -12.08 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.07 Total: -4.05 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.80 -7.48 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754153720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.435 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds