Wall clock time and date at job start Tue Mar 31 2020 17:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00404 * 2 1 4 4 H 1.48500 * 109.47300 * 239.99328 * 3 2 1 5 5 H 1.48496 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46968 * 119.99644 * 3 2 1 7 7 C 1.38818 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99946 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99770 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47250 * 179.97438 * 10 9 7 12 12 C 1.31002 * 120.00121 * 126.68492 * 11 10 9 13 13 C 1.50702 * 119.99985 * 6.65491 * 12 11 10 14 14 N 1.46495 * 109.47094 * 127.55744 * 13 12 11 15 15 C 1.34775 * 120.00277 * 180.02562 * 14 13 12 16 16 O 1.21277 * 119.99582 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00042 * 180.02562 * 15 14 13 18 18 H 1.08995 * 109.50931 * 31.77415 * 17 15 14 19 19 C 1.53095 * 109.54138 * 271.66169 * 17 15 14 20 20 O 1.43013 * 109.26345 * 183.19657 * 19 17 15 21 21 C 1.43011 * 113.73467 * 58.67065 * 20 19 17 22 22 C 1.53100 * 109.26346 * 301.33337 * 21 20 19 23 23 N 1.47009 * 109.25703 * 56.84863 * 22 21 20 24 24 C 1.46900 * 111.00226 * 177.61165 * 23 22 21 25 25 C 1.53000 * 109.47034 * 286.98183 * 24 23 22 26 26 F 1.39898 * 109.46843 * 305.57150 * 25 24 23 27 27 F 1.39901 * 109.47127 * 65.56813 * 25 24 23 28 28 H 0.97001 * 119.99741 * 0.02562 * 1 2 3 29 29 H 0.96992 * 120.00106 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46990 * 59.99922 * 10 9 7 31 31 H 1.08998 * 109.47058 * 300.00167 * 10 9 7 32 32 H 1.08002 * 119.99961 * 306.68905 * 11 10 9 33 33 H 1.07998 * 120.00213 * 186.65884 * 12 11 10 34 34 H 1.09006 * 109.46844 * 7.56019 * 13 12 11 35 35 H 1.08997 * 109.47189 * 247.56015 * 13 12 11 36 36 H 0.97008 * 120.00116 * 0.02562 * 14 13 12 37 37 H 1.09002 * 109.50871 * 303.13759 * 19 17 15 38 38 H 1.09000 * 109.50406 * 63.26364 * 19 17 15 39 39 H 1.09005 * 109.50760 * 181.40046 * 21 20 19 40 40 H 1.08997 * 109.50820 * 61.26733 * 21 20 19 41 41 H 1.09008 * 109.50539 * 296.91544 * 22 21 20 42 42 H 1.09000 * 109.54538 * 176.81104 * 22 21 20 43 43 H 1.09008 * 109.47013 * 46.97860 * 24 23 22 44 44 H 1.08997 * 109.47227 * 166.98108 * 24 23 22 45 45 H 1.09002 * 109.47054 * 185.56838 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1042 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1039 1.6962 1.2126 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0010 9 7 1.3253 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0785 -4.8023 0.0012 12 6 1.1676 -5.7408 -0.9084 13 6 2.3347 -5.7579 -1.8616 14 7 2.9655 -7.0799 -1.8375 15 6 4.0371 -7.3296 -2.6159 16 8 4.4789 -6.4599 -3.3365 17 6 4.6856 -8.6897 -2.5915 18 1 3.9299 -9.4498 -2.3935 19 6 5.7509 -8.7295 -1.4927 20 8 6.4135 -9.9964 -1.5236 21 6 7.0426 -10.2867 -2.7747 22 6 5.9904 -10.2627 -3.8866 23 7 5.3196 -8.9546 -3.8912 24 6 4.3395 -8.8694 -4.9821 25 6 5.0735 -8.7344 -6.3178 26 9 5.9533 -7.6484 -6.2586 27 9 5.7948 -9.9055 -6.5740 28 1 -0.4850 0.8401 -0.0004 29 1 0.3554 -2.3880 0.0005 30 1 2.6844 -3.7147 0.8905 31 1 2.6844 -3.7147 -0.8894 32 1 0.3031 -4.8494 0.7515 33 1 0.4046 -6.5022 -0.9753 34 1 3.0612 -5.0032 -1.5601 35 1 1.9832 -5.5414 -2.8704 36 1 2.6119 -7.7756 -1.2614 37 1 6.4774 -7.9345 -1.6611 38 1 5.2769 -8.5902 -0.5211 39 1 7.5027 -11.2738 -2.7303 40 1 7.8066 -9.5371 -2.9804 41 1 5.2555 -11.0480 -3.7093 42 1 6.4738 -10.4274 -4.8496 43 1 3.7285 -9.7721 -4.9929 44 1 3.7003 -7.9999 -4.8293 45 1 4.3489 -8.5721 -7.1158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754153720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:49 Heat of formation + Delta-G solvation = -155.268675 kcal Electronic energy + Delta-G solvation = -29047.018231 eV Core-core repulsion = 24542.746585 eV Total energy + Delta-G solvation = -4504.271646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.88344 -47.87377 -41.62383 -39.80418 -37.99761 -36.89547 -36.06833 -34.47758 -32.82765 -32.10503 -31.40431 -28.33981 -27.31475 -26.65479 -25.38062 -24.39528 -23.41238 -22.34383 -21.26279 -20.13109 -19.19027 -18.60708 -18.39991 -17.95747 -17.81471 -17.61070 -17.21505 -16.93614 -16.55068 -16.38234 -15.93872 -15.75128 -15.56937 -15.27052 -15.07244 -15.01845 -14.85406 -14.80974 -14.22982 -14.19719 -14.00390 -13.85135 -13.46146 -13.35797 -13.14461 -12.92728 -12.79326 -12.71255 -12.52618 -12.23001 -12.16100 -11.90737 -11.65590 -11.53482 -11.10469 -11.00525 -10.70153 -10.33812 -9.94265 -9.56309 -9.00015 -7.98550 -5.27842 1.03789 1.44439 1.46080 1.49177 1.55392 2.05646 2.45067 2.55441 2.85050 2.93443 3.33079 3.34884 3.51786 3.67478 3.69671 3.81641 3.85657 3.91264 4.01806 4.13085 4.17819 4.21083 4.22080 4.34772 4.40044 4.49321 4.59906 4.61366 4.63904 4.81011 4.85834 4.89045 4.91778 5.07296 5.33221 5.44830 5.53449 5.59287 5.72575 5.86357 5.98783 6.24368 6.51937 7.18865 7.30392 8.04381 8.28849 9.24645 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.016003 B = 0.002245 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.201850 B =12471.357221 C =13048.634600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.252 4.252 8 H 0.073 0.927 9 N -0.741 5.741 10 C 0.160 3.840 11 C -0.135 4.135 12 C -0.157 4.157 13 C 0.143 3.857 14 N -0.705 5.705 15 C 0.512 3.488 16 O -0.558 6.558 17 C 0.044 3.956 18 H 0.101 0.899 19 C 0.077 3.923 20 O -0.385 6.385 21 C 0.057 3.943 22 C 0.008 3.992 23 N -0.535 5.535 24 C 0.001 3.999 25 C 0.265 3.735 26 F -0.215 7.215 27 F -0.210 7.210 28 H 0.253 0.747 29 H 0.376 0.624 30 H 0.024 0.976 31 H 0.033 0.967 32 H 0.124 0.876 33 H 0.152 0.848 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.418 0.582 37 H 0.048 0.952 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.966 -29.922 -8.768 32.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.383 4.383 8 H 0.091 0.909 9 N -0.384 5.384 10 C 0.035 3.965 11 C -0.154 4.154 12 C -0.176 4.176 13 C 0.019 3.981 14 N -0.358 5.358 15 C 0.298 3.702 16 O -0.435 6.435 17 C -0.068 4.068 18 H 0.118 0.882 19 C -0.001 4.001 20 O -0.303 6.303 21 C -0.019 4.019 22 C -0.119 4.119 23 N -0.262 5.262 24 C -0.128 4.128 25 C 0.211 3.789 26 F -0.197 7.197 27 F -0.192 7.192 28 H 0.062 0.938 29 H 0.208 0.792 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.142 0.858 33 H 0.170 0.830 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.256 0.744 37 H 0.066 0.934 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.849 -28.960 -9.203 31.649 hybrid contribution -0.671 0.745 0.140 1.012 sum 8.178 -28.215 -9.063 30.742 Atomic orbital electron populations 1.69801 1.06536 1.26328 1.59101 1.25581 0.96477 1.01112 1.03352 0.85208 0.77281 0.79047 0.78223 1.20570 1.21726 1.20223 1.19594 0.91450 0.85415 1.41890 0.90940 1.42468 1.05686 1.00786 1.89478 1.20099 0.93803 0.84430 0.98206 1.23036 0.99380 0.94649 0.98357 1.22785 0.98376 1.01276 0.95185 1.20372 0.93854 0.84707 0.99127 1.45872 1.30597 1.14901 1.44457 1.20614 0.80069 0.89803 0.79742 1.90784 1.63400 1.47958 1.41333 1.22276 0.97975 0.94380 0.92152 0.88154 1.22567 0.93223 0.86306 0.97961 1.88014 1.71089 1.36239 1.34931 1.22886 0.94021 1.02986 0.82039 1.23270 0.98097 0.88176 1.02338 1.61835 1.30131 1.32449 1.01743 1.23349 0.94414 1.04887 0.90157 1.22315 0.85724 0.71002 0.99818 1.92991 1.72881 1.56084 1.97708 1.92861 1.81245 1.49882 1.95164 0.93808 0.79221 0.95834 0.94972 0.85807 0.83038 0.92057 0.91749 0.74444 0.93395 0.85690 0.85546 0.93089 0.91991 0.87378 0.88685 0.88732 0.83398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.74 13.06 21.65 0.28 -59.46 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -38.53 5.59 -347.17 -1.94 -40.47 16 10 C 0.16 6.45 6.37 85.63 0.55 7.00 16 11 C -0.13 -4.01 9.63 25.64 0.25 -3.77 16 12 C -0.16 -3.55 9.63 25.65 0.25 -3.30 16 13 C 0.14 3.58 5.77 85.63 0.49 4.07 16 14 N -0.70 -12.84 5.55 -466.80 -2.59 -15.43 16 15 C 0.51 11.43 5.72 87.66 0.50 11.93 16 16 O -0.56 -18.33 15.61 -3.02 -0.05 -18.37 16 17 C 0.04 0.72 2.38 44.18 0.10 0.83 16 18 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 19 C 0.08 1.31 6.28 72.01 0.45 1.76 16 20 O -0.38 -6.60 10.83 -148.98 -1.61 -8.22 16 21 C 0.06 0.81 7.01 72.02 0.50 1.31 16 22 C 0.01 0.11 5.33 86.32 0.46 0.57 16 23 N -0.54 -9.67 4.05 -874.37 -3.54 -13.22 16 24 C 0.00 0.01 5.02 86.30 0.43 0.44 16 25 C 0.27 4.10 5.56 71.98 0.40 4.50 16 26 F -0.22 -5.41 17.16 44.97 0.77 -4.64 16 27 F -0.21 -3.34 14.50 44.97 0.65 -2.68 16 28 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.38 20.48 7.66 -92.71 -0.71 19.77 16 30 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.03 1.34 5.25 -2.39 -0.01 1.33 16 32 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.06 1.95 5.27 -2.38 -0.01 1.94 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.42 4.48 8.46 -92.70 -0.78 3.69 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.11 1.54 5.43 -2.39 -0.01 1.53 16 43 H 0.10 0.84 8.04 -2.38 -0.02 0.82 16 44 H 0.09 1.74 5.96 -2.39 -0.01 1.73 16 45 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -77.59 373.00 -0.77 -78.36 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -0.46 Total: 27.21 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.70 Total: 7.91 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -7.79 Total: -128.58 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.66 Total: -26.59 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 1.42 Total: -7.33 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -77.59 -0.77 -78.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754153720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.906 kcal (2) G-P(sol) polarization free energy of solvation -77.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds