Wall clock time and date at job start Tue Mar 31 2020 18:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47625 * 2 1 4 4 N 1.46507 * 109.44615 * 305.41494 * 3 2 1 5 5 C 1.36938 * 119.99584 * 302.89169 * 4 3 2 6 6 H 1.07992 * 119.99948 * 4.87253 * 5 4 3 7 7 C 1.38812 * 119.99489 * 184.86597 * 5 4 3 8 8 N 1.31616 * 120.00428 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99469 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47228 * 60.00189 * 9 7 5 11 11 H 1.48497 * 109.46920 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47327 * 300.00341 * 9 7 5 13 13 C 1.53032 * 109.46621 * 185.44364 * 3 2 1 14 14 C 1.53195 * 109.31559 * 178.61355 * 13 3 2 15 15 N 1.46921 * 108.77462 * 54.63843 * 14 13 3 16 16 C 1.34774 * 120.63319 * 126.37183 * 15 14 13 17 17 O 1.21353 * 119.99689 * 1.45185 * 16 15 14 18 18 C 1.49447 * 120.00075 * 181.17863 * 16 15 14 19 19 O 1.21349 * 119.99900 * 353.30869 * 18 16 15 20 20 N 1.34777 * 119.99948 * 173.29956 * 18 16 15 21 21 C 1.46496 * 119.99987 * 179.97438 * 20 18 16 22 22 C 1.53008 * 109.47083 * 180.02562 * 21 20 18 23 23 F 1.39901 * 109.47059 * 300.00229 * 22 21 20 24 24 F 1.39899 * 109.47167 * 60.00141 * 22 21 20 25 25 C 1.46932 * 118.73609 * 306.64030 * 15 14 13 26 26 C 1.52759 * 109.00500 * 53.31414 * 25 15 14 27 27 H 1.09006 * 109.46893 * 63.05819 * 1 2 3 28 28 H 1.08997 * 109.47464 * 183.05724 * 1 2 3 29 29 H 1.08999 * 109.47250 * 303.06210 * 1 2 3 30 30 H 1.09000 * 109.47607 * 239.99852 * 2 1 3 31 31 H 1.09000 * 109.46938 * 119.99837 * 2 1 3 32 32 H 0.96994 * 119.99996 * 122.89844 * 4 3 2 33 33 H 0.96996 * 119.99815 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.49875 * 58.66463 * 13 3 2 35 35 H 1.08997 * 109.50163 * 298.56869 * 13 3 2 36 36 H 1.09001 * 109.58520 * 294.84879 * 14 13 3 37 37 H 1.09004 * 109.58489 * 174.42450 * 14 13 3 38 38 H 0.97004 * 119.99839 * 0.02562 * 20 18 16 39 39 H 1.08999 * 109.47493 * 300.00079 * 21 20 18 40 40 H 1.08997 * 109.47348 * 60.00430 * 21 20 18 41 41 H 1.08998 * 109.47026 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.58067 * 173.14411 * 25 15 14 43 43 H 1.08993 * 109.58626 * 293.57267 * 25 15 14 44 44 H 1.09007 * 109.56004 * 185.54876 * 26 25 15 45 45 H 1.09001 * 109.36530 * 65.49721 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.4479 2.1692 -1.1259 5 6 1.6168 1.7071 -2.4038 6 1 2.1183 0.7663 -2.5760 7 6 1.1431 2.4479 -3.4779 8 7 0.5322 3.5947 -3.2681 9 14 1.3728 1.8172 -5.2212 10 1 0.6960 0.5032 -5.3654 11 1 0.7821 2.7854 -6.1797 12 1 2.8221 1.6611 -5.5042 13 6 3.5642 1.4443 -0.1369 14 6 4.0681 2.8906 -0.1713 15 7 3.5683 3.5940 1.0178 16 6 4.4173 4.2415 1.8401 17 8 5.6038 4.2697 1.5872 18 6 3.8967 4.9301 3.0601 19 8 2.7005 5.0110 3.2472 20 7 4.7558 5.4611 3.9525 21 6 4.2455 6.1366 5.1481 22 6 5.4198 6.6445 5.9873 23 9 6.2222 5.5639 6.3688 24 9 6.1784 7.5446 5.2312 25 6 2.1258 3.5729 1.2968 26 6 1.6432 2.1236 1.3118 27 1 -0.3633 0.4657 -0.9162 28 1 -0.3634 -1.0262 0.0548 29 1 -0.3634 0.5606 0.8612 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 0.9364 2.9777 -0.9661 33 1 0.2009 4.1121 -4.0187 34 1 3.8473 0.9384 -1.0600 35 1 4.0066 0.9252 0.7133 36 1 3.6992 3.3848 -1.0702 37 1 5.1581 2.8980 -0.1690 38 1 5.7121 5.3966 3.8028 39 1 3.6207 6.9788 4.8509 40 1 3.6542 5.4355 5.7370 41 1 5.0401 7.1475 6.8766 42 1 1.9348 4.0302 2.2675 43 1 1.5954 4.1237 0.5202 44 1 0.5587 2.1012 1.4198 45 1 2.1035 1.5980 2.1484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755069992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:58 Heat of formation + Delta-G solvation = -141.399550 kcal Electronic energy + Delta-G solvation = -30190.356605 eV Core-core repulsion = 25686.686370 eV Total energy + Delta-G solvation = -4503.670235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.46514 -47.45543 -40.92343 -39.03217 -37.90829 -35.81464 -34.52407 -32.55270 -30.83398 -30.26000 -30.08198 -29.09726 -25.97700 -24.30526 -23.75344 -22.83257 -22.68698 -21.20928 -20.25832 -18.62956 -18.06389 -17.88002 -17.60762 -17.03694 -16.78409 -16.38521 -16.07607 -15.64357 -14.86714 -14.77028 -14.54349 -14.25127 -14.13942 -13.88623 -13.80879 -13.79162 -13.61513 -13.37124 -13.00328 -12.94917 -12.75947 -12.47071 -12.02844 -11.71044 -11.61974 -11.34286 -11.20692 -10.96029 -10.85720 -10.67001 -10.62006 -10.31334 -10.24556 -9.98929 -9.72370 -9.70559 -9.46246 -8.90069 -8.82983 -8.30490 -6.92657 -5.75871 -3.03981 1.40731 2.19605 3.14531 3.22791 3.43552 3.48396 3.49070 3.49725 3.65145 4.02843 4.22862 4.32858 4.59473 4.95311 4.97121 5.30793 5.38036 5.39683 5.59210 5.61992 5.68559 5.81848 5.88096 5.99244 6.07168 6.16140 6.19916 6.32519 6.40940 6.43709 6.52179 6.60584 6.64670 6.75379 6.84403 6.90398 6.93139 7.08513 7.21725 7.54931 7.68258 7.73427 8.08057 8.42920 9.54432 10.11432 10.47418 11.46407 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.002869 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.195534 B = 9756.881037 C =10248.089120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.199 3.801 4 N -0.712 5.712 5 C -0.230 4.230 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.932 5.932 9 Si 0.900 3.100 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.287 1.287 13 C -0.134 4.134 14 C 0.116 3.884 15 N -0.556 5.556 16 C 0.500 3.500 17 O -0.537 6.537 18 C 0.518 3.482 19 O -0.502 6.502 20 N -0.703 5.703 21 C 0.067 3.933 22 C 0.255 3.745 23 F -0.200 7.200 24 F -0.199 7.199 25 C 0.051 3.949 26 C -0.128 4.128 27 H 0.075 0.925 28 H 0.031 0.969 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.418 0.582 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.146 0.854 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.365 3.717 20.005 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.107 3.893 4 N -0.354 5.354 5 C -0.361 4.361 6 H 0.087 0.913 7 C -0.207 4.207 8 N -0.580 5.580 9 Si 0.732 3.268 10 H -0.215 1.215 11 H -0.219 1.219 12 H -0.214 1.214 13 C -0.174 4.174 14 C -0.005 4.005 15 N -0.287 5.287 16 C 0.281 3.719 17 O -0.415 6.415 18 C 0.301 3.699 19 O -0.379 6.379 20 N -0.359 5.359 21 C -0.057 4.057 22 C 0.201 3.799 23 F -0.181 7.181 24 F -0.180 7.180 25 C -0.069 4.069 26 C -0.167 4.167 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.255 0.745 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.147 0.853 42 H 0.162 0.838 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.185 3.718 19.807 21.081 hybrid contribution 0.446 -0.198 -1.241 1.334 sum 6.631 3.520 18.566 20.026 Atomic orbital electron populations 1.21648 0.95997 0.99242 1.02781 1.21860 0.96459 0.97906 0.99881 1.19588 0.90556 0.91310 0.87810 1.42457 1.62149 1.29822 1.01005 1.19048 1.31203 1.02678 0.83161 0.91338 1.24681 1.01659 0.96873 0.97491 1.69637 1.44031 1.14207 1.30147 0.86377 0.77596 0.77593 0.85265 1.21476 1.21907 1.21400 1.22327 0.98760 0.95012 1.01309 1.21794 0.98985 0.93041 0.86689 1.48084 1.08523 1.48157 1.23915 1.19673 0.86455 0.81496 0.84239 1.90739 1.15445 1.61177 1.74177 1.20498 0.86203 0.79092 0.84150 1.90365 1.14767 1.56938 1.75808 1.45552 1.11581 1.56898 1.21828 1.22634 0.95645 1.00239 0.87228 1.22240 0.84544 0.78996 0.94159 1.93038 1.76292 1.56809 1.91967 1.93044 1.78528 1.68012 1.78450 1.23167 0.78233 0.98488 1.07059 1.22035 1.01508 0.95423 0.97718 0.90599 0.94972 0.93951 0.92296 0.94166 0.78153 0.93581 0.90484 0.93455 0.88790 0.90324 0.74463 0.87617 0.87642 0.85277 0.83807 0.90365 0.90357 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.46 37.15 0.35 -2.06 16 2 C -0.12 -2.11 4.66 -26.74 -0.12 -2.24 16 3 C 0.20 3.62 0.44 -131.78 -0.06 3.57 16 4 N -0.71 -15.91 3.31 -47.19 -0.16 -16.06 16 5 C -0.23 -5.80 8.33 -15.06 -0.13 -5.92 16 6 H 0.07 1.71 6.77 -52.49 -0.36 1.36 16 7 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 8 N -0.93 -26.82 13.06 55.49 0.72 -26.09 16 9 Si 0.90 21.80 29.55 -169.99 -5.02 16.77 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C -0.13 -2.36 4.75 -26.61 -0.13 -2.49 16 14 C 0.12 2.12 6.17 -3.71 -0.02 2.10 16 15 N -0.56 -9.45 2.98 -173.54 -0.52 -9.97 16 16 C 0.50 8.11 7.76 -11.59 -0.09 8.02 16 17 O -0.54 -9.60 15.91 5.49 0.09 -9.51 16 18 C 0.52 6.99 7.80 -11.59 -0.09 6.90 16 19 O -0.50 -7.24 13.02 5.50 0.07 -7.16 16 20 N -0.70 -7.28 5.41 -60.73 -0.33 -7.60 16 21 C 0.07 0.44 5.91 -4.04 -0.02 0.42 16 22 C 0.25 1.35 5.42 37.16 0.20 1.55 16 23 F -0.20 -1.56 17.20 2.25 0.04 -1.52 16 24 F -0.20 -1.60 17.20 2.25 0.04 -1.56 16 25 C 0.05 0.85 5.92 -3.93 -0.02 0.82 16 26 C -0.13 -2.07 4.75 -26.83 -0.13 -2.19 16 27 H 0.08 1.56 7.23 -51.93 -0.38 1.19 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.68 6.41 -51.93 -0.33 0.34 16 30 H 0.06 1.10 7.23 -51.93 -0.38 0.73 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.38 9.34 6.39 -40.82 -0.26 9.08 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.08 1.44 7.59 -51.93 -0.39 1.04 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 2.00 7.74 -51.93 -0.40 1.59 16 37 H 0.08 1.41 7.01 -51.93 -0.36 1.04 16 38 H 0.42 4.36 7.85 -40.82 -0.32 4.04 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.15 2.26 3.81 -56.92 -0.22 2.05 16 43 H 0.08 1.46 6.88 -51.93 -0.36 1.11 16 44 H 0.08 1.24 6.46 -51.92 -0.34 0.90 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -30.40 362.50 -6.14 -36.54 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -6.18 Total: 12.63 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -0.35 Total: 8.08 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.28 Total: -59.73 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.16 Total: -16.68 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.08 Total: -3.08 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.40 -6.14 -36.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755069992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.858 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds