Wall clock time and date at job start Tue Mar 31 2020 18:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47625 * 2 1 4 4 N 1.46507 * 109.44615 * 305.41494 * 3 2 1 5 5 C 1.36938 * 119.99584 * 302.89169 * 4 3 2 6 6 H 1.07992 * 119.99948 * 4.87253 * 5 4 3 7 7 C 1.38812 * 119.99489 * 184.86597 * 5 4 3 8 8 N 1.31616 * 120.00428 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99469 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47228 * 60.00189 * 9 7 5 11 11 H 1.48497 * 109.46920 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47327 * 300.00341 * 9 7 5 13 13 C 1.53032 * 109.46621 * 185.44364 * 3 2 1 14 14 C 1.53195 * 109.31559 * 178.61355 * 13 3 2 15 15 N 1.46921 * 108.77462 * 54.63843 * 14 13 3 16 16 C 1.34774 * 120.63319 * 126.37183 * 15 14 13 17 17 O 1.21353 * 119.99689 * 1.45185 * 16 15 14 18 18 C 1.49447 * 120.00075 * 181.17863 * 16 15 14 19 19 O 1.21349 * 119.99900 * 353.30869 * 18 16 15 20 20 N 1.34777 * 119.99948 * 173.29956 * 18 16 15 21 21 C 1.46496 * 119.99987 * 179.97438 * 20 18 16 22 22 C 1.53008 * 109.47083 * 180.02562 * 21 20 18 23 23 F 1.39901 * 109.47059 * 300.00229 * 22 21 20 24 24 F 1.39899 * 109.47167 * 60.00141 * 22 21 20 25 25 C 1.46932 * 118.73609 * 306.64030 * 15 14 13 26 26 C 1.52759 * 109.00500 * 53.31414 * 25 15 14 27 27 H 1.09006 * 109.46893 * 63.05819 * 1 2 3 28 28 H 1.08997 * 109.47464 * 183.05724 * 1 2 3 29 29 H 1.08999 * 109.47250 * 303.06210 * 1 2 3 30 30 H 1.09000 * 109.47607 * 239.99852 * 2 1 3 31 31 H 1.09000 * 109.46938 * 119.99837 * 2 1 3 32 32 H 0.96994 * 119.99996 * 122.89844 * 4 3 2 33 33 H 0.96996 * 119.99815 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.49875 * 58.66463 * 13 3 2 35 35 H 1.08997 * 109.50163 * 298.56869 * 13 3 2 36 36 H 1.09001 * 109.58520 * 294.84879 * 14 13 3 37 37 H 1.09004 * 109.58489 * 174.42450 * 14 13 3 38 38 H 0.97004 * 119.99839 * 0.02562 * 20 18 16 39 39 H 1.08999 * 109.47493 * 300.00079 * 21 20 18 40 40 H 1.08997 * 109.47348 * 60.00430 * 21 20 18 41 41 H 1.08998 * 109.47026 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.58067 * 173.14411 * 25 15 14 43 43 H 1.08993 * 109.58626 * 293.57267 * 25 15 14 44 44 H 1.09007 * 109.56004 * 185.54876 * 26 25 15 45 45 H 1.09001 * 109.36530 * 65.49721 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.4479 2.1692 -1.1259 5 6 1.6168 1.7071 -2.4038 6 1 2.1183 0.7663 -2.5760 7 6 1.1431 2.4479 -3.4779 8 7 0.5322 3.5947 -3.2681 9 14 1.3728 1.8172 -5.2212 10 1 0.6960 0.5032 -5.3654 11 1 0.7821 2.7854 -6.1797 12 1 2.8221 1.6611 -5.5042 13 6 3.5642 1.4443 -0.1369 14 6 4.0681 2.8906 -0.1713 15 7 3.5683 3.5940 1.0178 16 6 4.4173 4.2415 1.8401 17 8 5.6038 4.2697 1.5872 18 6 3.8967 4.9301 3.0601 19 8 2.7005 5.0110 3.2472 20 7 4.7558 5.4611 3.9525 21 6 4.2455 6.1366 5.1481 22 6 5.4198 6.6445 5.9873 23 9 6.2222 5.5639 6.3688 24 9 6.1784 7.5446 5.2312 25 6 2.1258 3.5729 1.2968 26 6 1.6432 2.1236 1.3118 27 1 -0.3633 0.4657 -0.9162 28 1 -0.3634 -1.0262 0.0548 29 1 -0.3634 0.5606 0.8612 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 0.9364 2.9777 -0.9661 33 1 0.2009 4.1121 -4.0187 34 1 3.8473 0.9384 -1.0600 35 1 4.0066 0.9252 0.7133 36 1 3.6992 3.3848 -1.0702 37 1 5.1581 2.8980 -0.1690 38 1 5.7121 5.3966 3.8028 39 1 3.6207 6.9788 4.8509 40 1 3.6542 5.4355 5.7370 41 1 5.0401 7.1475 6.8766 42 1 1.9348 4.0302 2.2675 43 1 1.5954 4.1237 0.5202 44 1 0.5587 2.1012 1.4198 45 1 2.1035 1.5980 2.1484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755069992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:57 Heat of formation + Delta-G solvation = -162.338658 kcal Electronic energy + Delta-G solvation = -30191.264593 eV Core-core repulsion = 25686.686370 eV Total energy + Delta-G solvation = -4504.578223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.96173 -47.97123 -42.13094 -40.31096 -39.27517 -36.89829 -35.79263 -34.41071 -32.27292 -31.54775 -31.01348 -30.76688 -27.24762 -25.84151 -25.15044 -24.27833 -23.53588 -22.37828 -21.49840 -20.02752 -18.98097 -18.84614 -18.63684 -18.38601 -17.91165 -17.22254 -17.17392 -16.70039 -16.43843 -15.83119 -15.76988 -15.56334 -15.45706 -15.29821 -15.02876 -14.91628 -14.58485 -14.35254 -14.31613 -14.13923 -13.81852 -13.52526 -13.42880 -13.06116 -13.02781 -12.79328 -12.62147 -12.46256 -12.29323 -12.13589 -12.12161 -12.00363 -11.81962 -11.52399 -11.40033 -11.03912 -10.78508 -10.55794 -10.08762 -9.75211 -8.83667 -7.83415 -5.07788 0.23848 1.16560 1.49225 1.49699 1.54853 2.02617 2.36366 2.62125 2.70449 3.15505 3.31508 3.50431 3.58577 3.85376 3.88977 3.94785 4.05610 4.24207 4.24769 4.47842 4.48755 4.51492 4.55061 4.64213 4.67195 4.76713 4.81686 4.82036 5.06800 5.09405 5.14850 5.25006 5.25136 5.35152 5.41210 5.51269 5.63515 5.66357 5.76892 5.81530 6.24497 6.39186 6.57682 6.82315 7.46630 8.23833 8.47469 9.39886 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.002869 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.195534 B = 9756.881037 C =10248.089120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.118 4.118 3 C 0.191 3.809 4 N -0.716 5.716 5 C -0.204 4.204 6 H 0.072 0.928 7 C -0.074 4.074 8 N -0.968 5.968 9 Si 0.952 3.048 10 H -0.283 1.283 11 H -0.304 1.304 12 H -0.284 1.284 13 C -0.127 4.127 14 C 0.123 3.877 15 N -0.561 5.561 16 C 0.496 3.504 17 O -0.556 6.556 18 C 0.523 3.477 19 O -0.512 6.512 20 N -0.692 5.692 21 C 0.060 3.940 22 C 0.254 3.746 23 F -0.215 7.215 24 F -0.217 7.217 25 C 0.059 3.941 26 C -0.121 4.121 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.372 0.628 33 H 0.244 0.756 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.418 0.582 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.181 0.819 42 H 0.161 0.839 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.813 2.971 22.906 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C 0.101 3.899 4 N -0.356 5.356 5 C -0.337 4.337 6 H 0.090 0.910 7 C -0.266 4.266 8 N -0.620 5.620 9 Si 0.784 3.216 10 H -0.210 1.210 11 H -0.231 1.231 12 H -0.211 1.211 13 C -0.167 4.167 14 C 0.001 3.999 15 N -0.292 5.292 16 C 0.279 3.721 17 O -0.436 6.436 18 C 0.305 3.695 19 O -0.390 6.390 20 N -0.346 5.346 21 C -0.063 4.063 22 C 0.201 3.799 23 F -0.196 7.196 24 F -0.198 7.198 25 C -0.062 4.062 26 C -0.159 4.159 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.205 0.795 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.255 0.745 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.198 0.802 42 H 0.177 0.823 43 H 0.067 0.933 44 H 0.101 0.899 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.674 2.944 22.762 23.902 hybrid contribution 0.391 0.030 -2.015 2.053 sum 7.065 2.974 20.747 22.118 Atomic orbital electron populations 1.21564 0.95894 1.00282 1.01326 1.21817 0.96460 0.96864 1.00582 1.19882 0.90629 0.91852 0.87519 1.42572 1.62062 1.29620 1.01353 1.19302 1.28240 1.01821 0.84321 0.91033 1.25271 1.03235 0.97582 1.00470 1.69780 1.46479 1.15647 1.30119 0.85513 0.77381 0.76809 0.81892 1.20995 1.23102 1.21076 1.22244 0.98253 0.94522 1.01656 1.21522 0.98905 0.93325 0.86158 1.48092 1.08864 1.48487 1.23768 1.20231 0.86091 0.80858 0.84958 1.90723 1.16323 1.61641 1.74907 1.19859 0.86281 0.79565 0.83789 1.90331 1.14959 1.57887 1.75845 1.45592 1.11209 1.55654 1.22101 1.23026 0.96627 1.00769 0.85885 1.22735 0.83375 0.78475 0.95299 1.93010 1.76807 1.57765 1.92053 1.93012 1.79060 1.68568 1.79183 1.23151 0.77617 0.98720 1.06701 1.21995 1.02012 0.94924 0.96976 0.94537 0.93032 0.92548 0.93931 0.91052 0.79502 0.94665 0.91813 0.91038 0.92585 0.90170 0.74496 0.86429 0.85888 0.80236 0.82325 0.93317 0.89863 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 9.46 71.98 0.68 -3.70 16 2 C -0.12 -3.85 4.66 30.59 0.14 -3.70 16 3 C 0.19 6.75 0.44 3.63 0.00 6.76 16 4 N -0.72 -32.44 3.31 -303.22 -1.00 -33.45 16 5 C -0.20 -10.48 8.33 84.03 0.70 -9.78 16 6 H 0.07 3.59 6.77 -2.91 -0.02 3.57 16 7 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 8 N -0.97 -57.80 13.06 21.65 0.28 -57.51 16 9 Si 0.95 45.91 29.55 68.60 2.03 47.94 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 C -0.13 -4.35 4.75 30.67 0.15 -4.20 16 14 C 0.12 4.53 6.17 86.36 0.53 5.07 16 15 N -0.56 -18.87 2.98 -821.32 -2.45 -21.31 16 16 C 0.50 15.70 7.76 87.27 0.68 16.38 16 17 O -0.56 -19.63 15.91 -3.26 -0.05 -19.68 16 18 C 0.52 13.27 7.80 87.27 0.68 13.95 16 19 O -0.51 -13.73 13.02 -3.24 -0.04 -13.77 16 20 N -0.69 -12.91 5.41 -464.41 -2.51 -15.42 16 21 C 0.06 0.60 5.91 86.38 0.51 1.12 16 22 C 0.25 1.92 5.42 71.98 0.39 2.31 16 23 F -0.21 -2.84 17.20 44.97 0.77 -2.06 16 24 F -0.22 -3.05 17.20 44.97 0.77 -2.27 16 25 C 0.06 1.90 5.92 86.22 0.51 2.41 16 26 C -0.12 -3.64 4.75 30.53 0.14 -3.50 16 27 H 0.04 1.48 7.23 -2.38 -0.02 1.46 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.67 6.41 -2.39 -0.02 1.66 16 30 H 0.04 1.52 7.23 -2.39 -0.02 1.50 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.37 18.68 6.39 -92.71 -0.59 18.09 16 33 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.06 2.35 7.59 -2.38 -0.02 2.33 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.06 2.48 7.74 -2.39 -0.02 2.47 16 37 H 0.08 2.90 7.01 -2.38 -0.02 2.88 16 38 H 0.42 8.06 7.85 -92.71 -0.73 7.33 16 39 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.18 -0.39 8.14 -2.39 -0.02 -0.41 16 42 H 0.16 4.75 3.81 -81.42 -0.31 4.44 16 43 H 0.05 1.87 6.88 -2.39 -0.02 1.85 16 44 H 0.08 2.46 6.46 -2.38 -0.02 2.44 16 45 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -67.68 362.50 2.81 -64.86 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -0.57 Total: 33.21 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 5.58 Total: 19.47 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -5.68 Total: -127.70 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.09 Total: -33.45 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 1.55 Total: -4.34 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -67.68 2.81 -64.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755069992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.475 kcal (2) G-P(sol) polarization free energy of solvation -67.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds