Wall clock time and date at job start Tue Mar 31 2020 17:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.48277 * 2 1 4 4 C 1.53090 * 109.48026 * 239.97467 * 2 1 3 5 5 C 1.53204 * 109.15212 * 297.61575 * 4 2 1 6 6 H 1.09000 * 109.61079 * 62.93801 * 5 4 2 7 7 C 1.50702 * 109.54334 * 183.15438 * 5 4 2 8 8 O 1.21287 * 119.99552 * 359.56703 * 7 5 4 9 9 N 1.34775 * 120.00198 * 179.55908 * 7 5 4 10 10 C 1.46496 * 119.99978 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.47220 * 180.02562 * 10 9 7 12 12 C 1.38323 * 119.96623 * 269.72580 * 11 10 9 13 13 C 1.38284 * 120.13797 * 179.76257 * 12 11 10 14 14 C 1.38127 * 120.06696 * 0.51297 * 13 12 11 15 15 C 1.38860 * 119.92883 * 359.74280 * 14 13 12 16 16 O 1.35755 * 120.06485 * 179.97438 * 15 14 13 17 17 C 1.34821 * 117.00199 * 354.49363 * 16 15 14 18 18 H 1.08007 * 120.00040 * 5.05557 * 17 16 15 19 19 C 1.38654 * 120.00326 * 185.05480 * 17 16 15 20 20 N 1.31557 * 119.99507 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00296 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46765 * 60.00645 * 21 19 17 23 23 H 1.48498 * 109.47302 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47337 * 300.00672 * 21 19 17 25 25 C 1.38080 * 119.96385 * 90.00194 * 11 10 9 26 26 C 1.53174 * 109.04238 * 303.02563 * 5 4 2 27 27 C 1.53096 * 109.16279 * 56.97907 * 26 5 4 28 28 O 1.42899 * 109.41529 * 302.38915 * 27 26 5 29 29 H 1.09004 * 109.47282 * 60.00098 * 1 2 3 30 30 H 1.09005 * 109.47605 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47310 * 300.00276 * 1 2 3 32 32 H 1.08998 * 109.47169 * 60.00252 * 3 2 1 33 33 H 1.08999 * 109.46884 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46886 * 299.99549 * 3 2 1 35 35 H 1.08996 * 109.52315 * 57.53310 * 4 2 1 36 36 H 1.09007 * 109.52677 * 177.72299 * 4 2 1 37 37 H 0.97000 * 119.99883 * 0.02562 * 9 7 5 38 38 H 1.08997 * 109.47252 * 300.00503 * 10 9 7 39 39 H 1.09001 * 109.47261 * 60.00787 * 10 9 7 40 40 H 1.07997 * 119.92664 * 0.02562 * 12 11 10 41 41 H 1.07996 * 119.96643 * 180.25692 * 13 12 11 42 42 H 1.07997 * 120.03616 * 179.72195 * 14 13 12 43 43 H 0.97000 * 119.99867 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.03449 * 359.95385 * 25 11 10 45 45 H 1.08998 * 109.52368 * 297.06972 * 26 5 4 46 46 H 1.09000 * 109.57289 * 176.91303 * 26 5 4 47 47 H 1.09007 * 109.47989 * 182.40522 * 27 26 5 48 48 H 1.09001 * 109.47852 * 62.37823 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 1.5756 -2.1815 -1.2119 6 1 0.4867 -2.2195 -1.2412 7 6 2.1380 -2.9206 -2.3988 8 8 2.8351 -2.3371 -3.2016 9 7 1.8664 -4.2298 -2.5679 10 6 2.4135 -4.9483 -3.7214 11 6 1.9636 -6.3859 -3.6773 12 6 2.7331 -7.3309 -3.0230 13 6 2.3212 -8.6502 -2.9762 14 6 1.1447 -9.0301 -3.5922 15 6 0.3727 -8.0847 -4.2543 16 8 -0.7839 -8.4551 -4.8611 17 6 -1.0690 -9.7726 -4.8827 18 1 -0.4328 -10.4715 -4.3599 19 6 -2.1790 -10.2305 -5.5761 20 7 -2.9537 -9.3792 -6.2133 21 14 -2.5737 -12.0560 -5.6066 22 1 -2.7934 -12.5382 -4.2193 23 1 -3.8014 -12.2837 -6.4104 24 1 -1.4399 -12.7976 -6.2146 25 6 0.7865 -6.7594 -4.2951 26 6 2.0764 -2.8323 0.0812 27 6 1.5644 -2.0283 1.2793 28 8 2.0065 -0.6741 1.1665 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6770 1.9563 0.8900 33 1 3.1302 1.4421 0.0005 34 1 1.6770 1.9562 -0.8900 35 1 1.6420 -0.2356 -2.1398 36 1 3.1298 -0.6874 -1.2710 37 1 1.3086 -4.6963 -1.9259 38 1 2.0569 -4.4843 -4.6410 39 1 3.5023 -4.9070 -3.6921 40 1 3.6554 -7.0370 -2.5442 41 1 2.9220 -9.3849 -2.4611 42 1 0.8257 -10.0613 -3.5591 43 1 -3.7300 -9.6995 -6.6986 44 1 0.1880 -6.0218 -4.8089 45 1 3.1663 -2.8401 0.0867 46 1 1.7044 -3.8550 0.1431 47 1 1.9530 -2.4620 2.2008 48 1 0.4749 -2.0549 1.2961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772123038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:29 Heat of formation + Delta-G solvation = -101.586191 kcal Electronic energy + Delta-G solvation = -28192.924159 eV Core-core repulsion = 24212.917139 eV Total energy + Delta-G solvation = -3980.007020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.78947 -39.40033 -38.86239 -36.85081 -34.60983 -33.98349 -33.78727 -32.36976 -30.77992 -29.19760 -28.62272 -27.64428 -26.41135 -25.34244 -24.24291 -22.82456 -21.75683 -20.86924 -20.37469 -19.46093 -17.99939 -17.35917 -16.93048 -16.44784 -16.22180 -15.76026 -15.30138 -15.19269 -14.89595 -14.74293 -14.46244 -14.42616 -13.95266 -13.67912 -13.51366 -13.43679 -13.23891 -12.81344 -12.65166 -12.45975 -12.41879 -12.21751 -12.11732 -12.02055 -11.71741 -11.59925 -11.41372 -11.36843 -11.05610 -10.94441 -10.86367 -10.75201 -10.52581 -10.46662 -10.05011 -9.57066 -9.45196 -9.02160 -8.92213 -8.28485 -7.37356 -6.52580 -4.12304 1.85757 2.22426 2.60770 3.07509 3.08870 3.12110 3.28845 3.47988 3.89515 4.29185 4.38198 4.47073 4.52005 4.53596 4.69895 4.86027 4.87859 5.02252 5.03901 5.09452 5.13724 5.24327 5.26287 5.34362 5.38004 5.46447 5.49728 5.52264 5.64563 5.68559 5.70173 5.76474 5.80415 5.85072 5.89143 5.94584 6.03423 6.07371 6.20725 6.44195 6.51168 6.77150 6.95088 6.99293 7.14120 7.22862 7.31343 7.52298 7.67090 7.91316 8.21100 8.92584 9.60761 10.65028 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019081 B = 0.002124 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.076909 B =13178.704672 C =13595.769230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.110 3.890 3 C -0.137 4.137 4 C -0.119 4.119 5 C -0.111 4.111 6 H 0.100 0.900 7 C 0.517 3.483 8 O -0.544 6.544 9 N -0.719 5.719 10 C 0.167 3.833 11 C -0.073 4.073 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.226 4.226 15 C 0.150 3.850 16 O -0.176 6.176 17 C -0.394 4.394 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.171 4.171 26 C -0.147 4.147 27 C 0.060 3.940 28 O -0.374 6.374 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.403 0.597 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.271 0.729 44 H 0.118 0.882 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.632 14.143 13.608 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.071 3.929 3 C -0.194 4.194 4 C -0.158 4.158 5 C -0.132 4.132 6 H 0.118 0.882 7 C 0.302 3.698 8 O -0.421 6.421 9 N -0.370 5.370 10 C 0.044 3.956 11 C -0.074 4.074 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.245 4.245 15 C 0.096 3.904 16 O -0.079 6.079 17 C -0.470 4.470 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.191 4.191 26 C -0.185 4.185 27 C -0.016 4.016 28 O -0.293 6.293 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.237 0.763 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.115 0.885 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.848 14.773 12.870 21.107 hybrid contribution -0.684 -1.616 0.010 1.754 sum 7.164 13.158 12.880 19.758 Atomic orbital electron populations 1.22484 0.95660 1.02784 1.02974 1.21533 0.93137 0.92989 0.85249 1.21739 1.02082 0.93094 1.02487 1.22001 1.02700 0.92981 0.98074 1.21438 1.02010 0.96241 0.93534 0.88197 1.20531 0.80552 0.81944 0.86724 1.90693 1.38415 1.67468 1.45528 1.46152 1.53014 1.09880 1.27989 1.20157 0.98307 0.88342 0.88756 1.19263 0.95098 0.93628 0.99374 1.20474 1.01186 0.93341 1.06501 1.20750 0.95507 0.95436 0.97703 1.21243 0.97659 1.00592 1.05030 1.19324 0.86625 0.92872 0.91553 1.83980 1.31060 1.27112 1.65729 1.21276 1.11713 0.80138 1.33895 0.89077 1.25301 0.95318 1.00367 0.95469 1.70026 1.14715 1.34698 1.30091 0.85774 0.78409 0.80427 0.78795 1.19466 1.20223 1.19454 1.20080 0.98021 0.94421 1.06606 1.22203 1.02699 0.99906 0.93738 1.22570 0.98979 0.82151 0.97932 1.87974 1.73732 1.24437 1.43145 0.91252 0.91822 0.91724 0.91807 0.91713 0.90979 0.90175 0.90174 0.76288 0.90886 0.90978 0.87534 0.87271 0.85451 0.91864 0.86436 0.90376 0.90108 0.88512 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 7.93 37.15 0.29 -1.05 16 2 C 0.11 0.95 1.11 -90.58 -0.10 0.85 16 3 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 4 C -0.12 -1.18 3.52 -26.58 -0.09 -1.28 16 5 C -0.11 -1.08 2.30 -91.58 -0.21 -1.29 16 6 H 0.10 0.86 6.62 -51.93 -0.34 0.52 16 7 C 0.52 6.72 7.16 -10.99 -0.08 6.64 16 8 O -0.54 -9.03 15.97 5.55 0.09 -8.94 16 9 N -0.72 -9.04 5.45 -61.47 -0.34 -9.38 16 10 C 0.17 2.41 5.80 -5.19 -0.03 2.38 16 11 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 12 C -0.20 -3.12 9.70 -39.53 -0.38 -3.50 16 13 C -0.08 -1.29 10.04 -39.61 -0.40 -1.69 16 14 C -0.23 -4.63 9.17 -39.39 -0.36 -4.99 16 15 C 0.15 3.45 6.65 -39.11 -0.26 3.19 16 16 O -0.18 -4.84 9.76 0.06 0.00 -4.83 16 17 C -0.39 -10.67 9.49 30.89 0.29 -10.38 16 18 H 0.09 2.26 5.20 -52.48 -0.27 1.99 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.70 13.67 55.48 0.76 -23.94 16 21 Si 0.94 19.96 29.55 -169.99 -5.02 14.94 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 C -0.17 -3.40 9.65 -39.40 -0.38 -3.78 16 26 C -0.15 -1.23 5.29 -26.59 -0.14 -1.37 16 27 C 0.06 0.47 6.51 37.21 0.24 0.71 16 28 O -0.37 -3.65 10.24 -35.23 -0.36 -4.01 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.46 4.98 -51.93 -0.26 0.20 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.91 8.03 -51.92 -0.42 0.50 16 37 H 0.40 4.46 7.95 -40.82 -0.32 4.13 16 38 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 39 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 40 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.13 2.62 5.64 -52.49 -0.30 2.33 16 43 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.58 7.67 -51.93 -0.40 0.18 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.39 6.34 -51.93 -0.33 0.06 16 LS Contribution 386.09 15.07 5.82 5.82 Total: -1.00 -31.57 386.09 -8.24 -39.81 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.27 Total: 7.56 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -1.92 Total: -17.02 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.42 Total: -33.32 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.27 Total: -17.79 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.57 -8.24 -39.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772123038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.773 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds