Wall clock time and date at job start Tue Mar 31 2020 17:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.48277 * 2 1 4 4 C 1.53090 * 109.48026 * 239.97467 * 2 1 3 5 5 C 1.53204 * 109.15212 * 297.61575 * 4 2 1 6 6 H 1.09000 * 109.61079 * 62.93801 * 5 4 2 7 7 C 1.50702 * 109.54334 * 183.15438 * 5 4 2 8 8 O 1.21287 * 119.99552 * 359.56703 * 7 5 4 9 9 N 1.34775 * 120.00198 * 179.55908 * 7 5 4 10 10 C 1.46496 * 119.99978 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.47220 * 180.02562 * 10 9 7 12 12 C 1.38323 * 119.96623 * 269.72580 * 11 10 9 13 13 C 1.38284 * 120.13797 * 179.76257 * 12 11 10 14 14 C 1.38127 * 120.06696 * 0.51297 * 13 12 11 15 15 C 1.38860 * 119.92883 * 359.74280 * 14 13 12 16 16 O 1.35755 * 120.06485 * 179.97438 * 15 14 13 17 17 C 1.34821 * 117.00199 * 354.49363 * 16 15 14 18 18 H 1.08007 * 120.00040 * 5.05557 * 17 16 15 19 19 C 1.38654 * 120.00326 * 185.05480 * 17 16 15 20 20 N 1.31557 * 119.99507 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00296 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46765 * 60.00645 * 21 19 17 23 23 H 1.48498 * 109.47302 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47337 * 300.00672 * 21 19 17 25 25 C 1.38080 * 119.96385 * 90.00194 * 11 10 9 26 26 C 1.53174 * 109.04238 * 303.02563 * 5 4 2 27 27 C 1.53096 * 109.16279 * 56.97907 * 26 5 4 28 28 O 1.42899 * 109.41529 * 302.38915 * 27 26 5 29 29 H 1.09004 * 109.47282 * 60.00098 * 1 2 3 30 30 H 1.09005 * 109.47605 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47310 * 300.00276 * 1 2 3 32 32 H 1.08998 * 109.47169 * 60.00252 * 3 2 1 33 33 H 1.08999 * 109.46884 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46886 * 299.99549 * 3 2 1 35 35 H 1.08996 * 109.52315 * 57.53310 * 4 2 1 36 36 H 1.09007 * 109.52677 * 177.72299 * 4 2 1 37 37 H 0.97000 * 119.99883 * 0.02562 * 9 7 5 38 38 H 1.08997 * 109.47252 * 300.00503 * 10 9 7 39 39 H 1.09001 * 109.47261 * 60.00787 * 10 9 7 40 40 H 1.07997 * 119.92664 * 0.02562 * 12 11 10 41 41 H 1.07996 * 119.96643 * 180.25692 * 13 12 11 42 42 H 1.07997 * 120.03616 * 179.72195 * 14 13 12 43 43 H 0.97000 * 119.99867 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.03449 * 359.95385 * 25 11 10 45 45 H 1.08998 * 109.52368 * 297.06972 * 26 5 4 46 46 H 1.09000 * 109.57289 * 176.91303 * 26 5 4 47 47 H 1.09007 * 109.47989 * 182.40522 * 27 26 5 48 48 H 1.09001 * 109.47852 * 62.37823 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 1.5756 -2.1815 -1.2119 6 1 0.4867 -2.2195 -1.2412 7 6 2.1380 -2.9206 -2.3988 8 8 2.8351 -2.3371 -3.2016 9 7 1.8664 -4.2298 -2.5679 10 6 2.4135 -4.9483 -3.7214 11 6 1.9636 -6.3859 -3.6773 12 6 2.7331 -7.3309 -3.0230 13 6 2.3212 -8.6502 -2.9762 14 6 1.1447 -9.0301 -3.5922 15 6 0.3727 -8.0847 -4.2543 16 8 -0.7839 -8.4551 -4.8611 17 6 -1.0690 -9.7726 -4.8827 18 1 -0.4328 -10.4715 -4.3599 19 6 -2.1790 -10.2305 -5.5761 20 7 -2.9537 -9.3792 -6.2133 21 14 -2.5737 -12.0560 -5.6066 22 1 -2.7934 -12.5382 -4.2193 23 1 -3.8014 -12.2837 -6.4104 24 1 -1.4399 -12.7976 -6.2146 25 6 0.7865 -6.7594 -4.2951 26 6 2.0764 -2.8323 0.0812 27 6 1.5644 -2.0283 1.2793 28 8 2.0065 -0.6741 1.1665 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6770 1.9563 0.8900 33 1 3.1302 1.4421 0.0005 34 1 1.6770 1.9562 -0.8900 35 1 1.6420 -0.2356 -2.1398 36 1 3.1298 -0.6874 -1.2710 37 1 1.3086 -4.6963 -1.9259 38 1 2.0569 -4.4843 -4.6410 39 1 3.5023 -4.9070 -3.6921 40 1 3.6554 -7.0370 -2.5442 41 1 2.9220 -9.3849 -2.4611 42 1 0.8257 -10.0613 -3.5591 43 1 -3.7300 -9.6995 -6.6986 44 1 0.1880 -6.0218 -4.8089 45 1 3.1663 -2.8401 0.0867 46 1 1.7044 -3.8550 0.1431 47 1 1.9530 -2.4620 2.2008 48 1 0.4749 -2.0549 1.2961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772123038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:28 Heat of formation + Delta-G solvation = -121.719426 kcal Electronic energy + Delta-G solvation = -28193.797201 eV Core-core repulsion = 24212.917139 eV Total energy + Delta-G solvation = -3980.880063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.65628 -40.85770 -39.99112 -38.46480 -35.84260 -34.78903 -34.48713 -34.27483 -32.15579 -30.78010 -29.32156 -28.23216 -27.76284 -27.08359 -25.19810 -23.57697 -23.26976 -22.42896 -21.37613 -20.17580 -19.62340 -18.92259 -18.13610 -17.33381 -17.00474 -16.89168 -16.64481 -16.50579 -16.12474 -15.95378 -15.56022 -15.52926 -15.46322 -14.99832 -14.64457 -14.45988 -14.22571 -13.98299 -13.95894 -13.67073 -13.43237 -13.23277 -13.02563 -12.96768 -12.83925 -12.63453 -12.54263 -12.40594 -12.31728 -12.28050 -12.15281 -12.07177 -11.74130 -11.24547 -11.21738 -10.93968 -10.80326 -10.37114 -10.14960 -9.76139 -9.04621 -8.47541 -6.16161 0.36998 0.69239 1.35544 1.45659 1.51510 1.56696 2.16900 2.20338 2.82714 2.86403 3.14334 3.38782 3.53573 3.63047 3.74502 3.81887 3.86808 4.05720 4.07759 4.20018 4.29051 4.31486 4.38686 4.42744 4.46507 4.51413 4.65010 4.67198 4.71331 4.72575 4.81693 4.84717 4.89485 5.00068 5.00521 5.07009 5.10637 5.11797 5.12519 5.24193 5.32118 5.33868 5.41546 5.61040 5.69286 5.70511 6.00744 6.15103 6.35798 6.49484 6.97186 7.17036 7.77149 8.75250 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019081 B = 0.002124 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.076909 B =13178.704672 C =13595.769230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.110 3.890 3 C -0.138 4.138 4 C -0.117 4.117 5 C -0.106 4.106 6 H 0.116 0.884 7 C 0.517 3.483 8 O -0.582 6.582 9 N -0.712 5.712 10 C 0.173 3.827 11 C -0.058 4.058 12 C -0.169 4.169 13 C -0.069 4.069 14 C -0.234 4.234 15 C 0.112 3.888 16 O -0.232 6.232 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.181 4.181 26 C -0.142 4.142 27 C 0.057 3.943 28 O -0.390 6.390 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.412 0.588 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.272 0.728 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.097 0.903 47 H 0.111 0.889 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.311 13.640 16.055 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.071 3.929 3 C -0.195 4.195 4 C -0.155 4.155 5 C -0.127 4.127 6 H 0.134 0.866 7 C 0.304 3.696 8 O -0.462 6.462 9 N -0.364 5.364 10 C 0.049 3.951 11 C -0.059 4.059 12 C -0.187 4.187 13 C -0.087 4.087 14 C -0.254 4.254 15 C 0.062 3.938 16 O -0.138 6.138 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.837 3.163 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.201 4.201 26 C -0.180 4.180 27 C -0.019 4.019 28 O -0.310 6.310 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.249 0.751 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.129 0.871 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.570 14.279 15.369 23.059 hybrid contribution -0.901 -1.256 -0.618 1.665 sum 8.669 13.023 14.751 21.502 Atomic orbital electron populations 1.22471 0.94510 1.03191 1.03548 1.21581 0.93973 0.93130 0.84243 1.21770 1.01651 0.92763 1.03309 1.21959 1.01432 0.93388 0.98703 1.21465 1.02722 0.95702 0.92770 0.86576 1.21082 0.79724 0.81730 0.87015 1.90680 1.40235 1.68191 1.47095 1.46042 1.52916 1.09890 1.27512 1.20029 0.98928 0.86928 0.89175 1.19425 0.93494 0.95065 0.97887 1.20985 1.01522 0.92445 1.03788 1.21163 0.94152 0.96863 0.96475 1.21380 0.98767 0.99919 1.05284 1.19857 0.86676 0.94584 0.92677 1.83946 1.33809 1.27436 1.68631 1.21782 1.12248 0.80675 1.34189 0.87887 1.26584 0.94943 1.05657 0.94890 1.70179 1.15953 1.37257 1.32498 0.84660 0.78355 0.73860 0.79452 1.17954 1.19876 1.18246 1.20208 0.99318 0.93283 1.07326 1.22196 1.02029 1.00798 0.92989 1.22730 0.99811 0.81239 0.98152 1.87961 1.74233 1.25438 1.43389 0.90715 0.91483 0.91161 0.91170 0.92462 0.89987 0.90816 0.92142 0.75145 0.92059 0.89706 0.83494 0.83327 0.86119 0.91874 0.87528 0.91470 0.88439 0.87081 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 7.93 71.98 0.57 -1.73 16 2 C 0.11 1.74 1.11 -10.77 -0.01 1.73 16 3 C -0.14 -1.92 8.85 71.98 0.64 -1.28 16 4 C -0.12 -2.22 3.52 30.69 0.11 -2.11 16 5 C -0.11 -1.88 2.30 -11.41 -0.03 -1.91 16 6 H 0.12 1.73 6.62 -2.39 -0.02 1.71 16 7 C 0.52 12.72 7.16 87.66 0.63 13.35 16 8 O -0.58 -19.01 15.97 -3.05 -0.05 -19.06 16 9 N -0.71 -16.41 5.45 -466.79 -2.55 -18.95 16 10 C 0.17 4.63 5.80 85.63 0.50 5.13 16 11 C -0.06 -1.79 5.25 -19.88 -0.10 -1.89 16 12 C -0.17 -4.63 9.70 22.30 0.22 -4.41 16 13 C -0.07 -2.09 10.04 22.25 0.22 -1.86 16 14 C -0.23 -9.42 9.17 22.39 0.21 -9.22 16 15 C 0.11 5.30 6.65 22.58 0.15 5.45 16 16 O -0.23 -13.50 9.76 -22.71 -0.22 -13.72 16 17 C -0.41 -23.30 9.49 67.92 0.64 -22.66 16 18 H 0.10 5.27 5.20 -2.91 -0.02 5.25 16 19 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 20 N -0.92 -55.69 13.67 21.61 0.30 -55.40 16 21 Si 1.02 41.73 29.55 68.60 2.03 43.75 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 25 C -0.18 -7.28 9.65 22.39 0.22 -7.07 16 26 C -0.14 -2.02 5.29 30.68 0.16 -1.86 16 27 C 0.06 0.74 6.51 72.01 0.47 1.21 16 28 O -0.39 -6.95 10.24 -148.98 -1.53 -8.48 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.80 4.98 -2.38 -0.01 0.79 16 31 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.38 8.03 -2.38 -0.02 1.36 16 37 H 0.41 8.01 7.95 -92.71 -0.74 7.28 16 38 H 0.06 1.82 8.08 -2.39 -0.02 1.81 16 39 H 0.08 2.13 8.08 -2.39 -0.02 2.11 16 40 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 41 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.12 4.95 5.64 -2.91 -0.02 4.94 16 43 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 45 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.10 1.06 7.67 -2.39 -0.02 1.04 16 47 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 48 H 0.07 0.74 6.34 -2.39 -0.02 0.72 16 Total: -1.00 -73.41 386.09 3.27 -70.14 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.24 Total: 31.66 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 5.05 Total: -29.95 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -2.25 Total: -74.35 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.80 Total: -41.25 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -73.41 3.27 -70.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772123038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.576 kcal (2) G-P(sol) polarization free energy of solvation -73.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds