Wall clock time and date at job start Tue Mar 31 2020 17:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 C 1.52999 * 109.47277 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47190 * 180.02562 * 4 3 2 6 6 C 1.46505 * 119.99710 * 269.99188 * 5 4 3 7 7 C 1.34776 * 120.00679 * 89.99805 * 5 4 3 8 8 O 1.21724 * 119.99573 * 359.97438 * 7 5 4 9 9 C 1.46251 * 120.00252 * 179.97438 * 7 5 4 10 10 C 1.35026 * 120.00107 * 179.97438 * 9 7 5 11 11 C 1.46962 * 120.00149 * 179.72723 * 10 9 7 12 12 C 1.40030 * 120.07812 * 359.71821 * 11 10 9 13 13 C 1.37651 * 119.99651 * 179.76999 * 12 11 10 14 14 C 1.39049 * 120.16215 * 0.50959 * 13 12 11 15 15 O 1.35623 * 119.91983 * 179.76593 * 14 13 12 16 16 C 1.34757 * 116.99899 * 354.38344 * 15 14 13 17 17 H 1.08003 * 120.00150 * 5.06176 * 16 15 14 18 18 C 1.38705 * 120.00042 * 185.06816 * 16 15 14 19 19 N 1.31512 * 120.00371 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99940 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47088 * 90.00070 * 20 18 16 22 22 H 1.48497 * 109.47157 * 210.00558 * 20 18 16 23 23 H 1.48499 * 109.47104 * 330.00406 * 20 18 16 24 24 C 1.39623 * 120.16220 * 359.74619 * 14 13 12 25 25 O 1.35954 * 120.00356 * 180.02562 * 24 14 13 26 26 C 1.42900 * 116.99886 * 179.97438 * 25 24 14 27 27 C 1.38073 * 119.99354 * 359.97438 * 24 14 13 28 28 H 1.09006 * 109.47118 * 60.00528 * 1 2 3 29 29 H 1.09002 * 109.46757 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47733 * 299.99984 * 1 2 3 31 31 H 1.08997 * 109.47733 * 240.00016 * 2 1 3 32 32 H 1.09006 * 109.47118 * 119.99472 * 2 1 3 33 33 H 1.08991 * 109.47475 * 59.99844 * 3 2 1 34 34 H 1.09006 * 109.46769 * 299.99685 * 3 2 1 35 35 H 1.08996 * 109.47595 * 59.99291 * 4 3 2 36 36 H 1.09006 * 109.46806 * 299.99469 * 4 3 2 37 37 H 1.08999 * 109.47535 * 270.00691 * 6 5 4 38 38 H 1.09011 * 109.46779 * 30.00190 * 6 5 4 39 39 H 1.09000 * 109.47068 * 150.00047 * 6 5 4 40 40 H 1.08004 * 119.99906 * 359.72502 * 9 7 5 41 41 H 1.07999 * 119.99467 * 359.72069 * 10 9 7 42 42 H 1.08004 * 120.00196 * 0.02562 * 12 11 10 43 43 H 1.08004 * 119.91893 * 180.23858 * 13 12 11 44 44 H 0.97004 * 120.00861 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.47164 * 179.97438 * 26 25 24 46 46 H 1.08997 * 109.47140 * 299.99904 * 26 25 24 47 47 H 1.09002 * 109.47026 * 60.00206 * 26 25 24 48 48 H 1.08004 * 120.08220 * 179.97438 * 27 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3019 3.5151 -1.2685 7 6 4.2833 3.4586 1.1674 8 8 4.0804 2.8844 2.2213 9 6 4.7713 4.8373 1.1679 10 6 4.9963 5.4734 2.3375 11 6 5.4923 6.8568 2.3380 12 6 5.7378 7.5148 1.1265 13 6 6.1979 8.8121 1.1289 14 6 6.4302 9.4688 2.3324 15 8 6.8880 10.7454 2.3290 16 6 7.2071 11.2778 1.1329 17 1 7.0170 10.7221 0.2265 18 6 7.7797 12.5393 1.0658 19 7 8.0906 13.0591 -0.1016 20 14 8.1079 13.5007 2.6335 21 1 9.4692 13.1816 3.1340 22 1 8.0126 14.9555 2.3511 23 1 7.1029 13.1291 3.6616 24 6 6.1928 8.8173 3.5443 25 8 6.4204 9.4626 4.7190 26 6 6.1554 8.7357 5.9205 27 6 5.7257 7.5180 3.5495 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.9330 0.9289 -0.8907 36 1 3.9336 0.9287 0.8892 37 1 5.3312 3.3440 -1.5837 38 1 3.6208 3.1313 -2.0282 39 1 4.1350 4.5842 -1.1376 40 1 4.9555 5.3453 0.2327 41 1 4.8116 4.9656 3.2725 42 1 5.5622 7.0058 0.1903 43 1 6.3832 9.3197 0.1938 44 1 8.4907 13.9416 -0.1486 45 1 6.3787 9.3645 6.7824 46 1 5.1053 8.4447 5.9449 47 1 6.7806 7.8433 5.9506 48 1 5.5420 7.0125 4.4861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044250323.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:01 Heat of formation + Delta-G solvation = -63.101839 kcal Electronic energy + Delta-G solvation = -27483.851098 eV Core-core repulsion = 23505.512885 eV Total energy + Delta-G solvation = -3978.338213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.00622 -39.73470 -37.86972 -36.85326 -36.28929 -34.61047 -33.09276 -32.42943 -30.05835 -29.75484 -28.68560 -26.89580 -26.61102 -25.58099 -24.43153 -22.73485 -21.78613 -21.41002 -20.33329 -18.59009 -18.17218 -17.96958 -17.14824 -16.52574 -15.86032 -15.65228 -15.49423 -15.38977 -15.35884 -14.63780 -14.19653 -13.97095 -13.90945 -13.81278 -13.74545 -13.27919 -13.22557 -13.10957 -12.77920 -12.66279 -12.42360 -12.27735 -11.94642 -11.87648 -11.66373 -11.55705 -11.48527 -11.35687 -11.08896 -10.99651 -10.89894 -10.82338 -10.74526 -10.30929 -9.77317 -9.60376 -9.46986 -8.92353 -8.73649 -8.09699 -7.06554 -6.59217 -4.19056 0.92783 1.99079 2.43267 2.96844 3.16266 3.20746 3.38129 3.50010 3.77453 4.14455 4.36673 4.53659 4.56952 4.61485 4.75453 4.81474 4.94623 4.95341 5.02918 5.11559 5.23607 5.29565 5.30746 5.41572 5.41882 5.42582 5.46197 5.50429 5.53581 5.56276 5.65456 5.67730 5.70226 5.84350 5.87708 5.96167 6.04355 6.05737 6.28049 6.34996 6.43899 6.54349 6.75810 6.89464 7.14108 7.30151 7.36761 7.48722 7.77580 7.97287 8.26132 8.74438 9.36289 10.46467 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019085 B = 0.002110 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.806760 B =13268.637737 C =14370.864593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.116 3.884 5 N -0.621 5.621 6 C 0.078 3.922 7 C 0.555 3.445 8 O -0.556 6.556 9 C -0.273 4.273 10 C 0.030 3.970 11 C -0.155 4.155 12 C -0.063 4.063 13 C -0.209 4.209 14 C 0.155 3.845 15 O -0.189 6.189 16 C -0.388 4.388 17 H 0.111 0.889 18 C 0.067 3.933 19 N -0.866 5.866 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.254 1.254 24 C 0.052 3.948 25 O -0.309 6.309 26 C 0.029 3.971 27 C -0.136 4.136 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.144 0.856 44 H 0.283 0.717 45 H 0.092 0.908 46 H 0.049 0.951 47 H 0.049 0.951 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.935 -19.326 0.052 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.174 4.174 4 C -0.006 4.006 5 N -0.353 5.353 6 C -0.065 4.065 7 C 0.349 3.651 8 O -0.437 6.437 9 C -0.294 4.294 10 C 0.010 3.990 11 C -0.156 4.156 12 C -0.082 4.082 13 C -0.229 4.229 14 C 0.100 3.900 15 O -0.092 6.092 16 C -0.463 4.463 17 H 0.128 0.872 18 C -0.139 4.139 19 N -0.501 5.501 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.178 1.178 24 C 0.007 3.993 25 O -0.223 6.223 26 C -0.066 4.066 27 C -0.156 4.156 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.161 0.839 44 H 0.093 0.907 45 H 0.111 0.889 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.813 -19.026 0.650 20.977 hybrid contribution 0.112 0.287 0.294 0.426 sum -8.700 -18.738 0.944 20.681 Atomic orbital electron populations 1.21758 0.95745 1.01512 1.01907 1.21448 0.96040 0.96433 1.02034 1.21982 0.95665 0.97119 1.02617 1.21436 0.93823 0.82487 1.02891 1.47705 1.66960 1.14216 1.06467 1.21835 1.01184 0.98344 0.85133 1.18422 0.76817 0.87041 0.82867 1.90762 1.53595 1.68340 1.30975 1.22639 1.12414 0.94693 0.99603 1.22254 0.87246 0.91608 0.97857 1.18247 1.10579 0.93958 0.92845 1.20973 0.96770 0.93850 0.96570 1.20973 1.08281 0.95823 0.97796 1.18620 0.95619 0.84943 0.90819 1.83589 1.70259 1.21495 1.33835 1.20901 1.40681 1.01846 0.82840 0.87183 1.24516 0.94916 0.96020 0.98403 1.69617 1.38927 1.17717 1.23847 0.86167 0.80127 0.78197 0.82552 1.19639 1.20618 1.17764 1.18036 1.05495 0.91579 0.84203 1.86176 1.83557 1.40729 1.11831 1.22936 1.00223 0.97421 0.86054 1.20895 1.03484 0.93165 0.98020 0.92805 0.92787 0.92678 0.92038 0.91804 0.91435 0.91987 0.90890 0.89980 0.92524 0.91341 0.90392 0.85413 0.85906 0.86406 0.83860 0.90655 0.88938 0.93257 0.93244 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.87 5.93 -26.73 -0.16 -1.02 16 3 C -0.14 -1.18 5.54 -26.73 -0.15 -1.33 16 4 C 0.12 1.10 5.41 -4.04 -0.02 1.08 16 5 N -0.62 -6.84 2.87 -183.28 -0.53 -7.37 16 6 C 0.08 0.62 10.15 59.85 0.61 1.23 16 7 C 0.56 7.91 7.60 -13.04 -0.10 7.81 16 8 O -0.56 -9.64 15.81 5.17 0.08 -9.56 16 9 C -0.27 -3.72 8.60 -37.51 -0.32 -4.04 16 10 C 0.03 0.45 9.45 -37.19 -0.35 0.10 16 11 C -0.16 -2.56 5.87 -105.04 -0.62 -3.18 16 12 C -0.06 -1.08 9.40 -39.12 -0.37 -1.44 16 13 C -0.21 -4.23 9.14 -39.50 -0.36 -4.59 16 14 C 0.15 3.50 6.67 -38.76 -0.26 3.24 16 15 O -0.19 -4.90 8.35 -13.96 -0.12 -5.01 16 16 C -0.39 -10.46 9.94 30.91 0.31 -10.16 16 17 H 0.11 2.97 5.42 -52.48 -0.28 2.68 16 18 C 0.07 1.81 5.49 -17.52 -0.10 1.71 16 19 N -0.87 -23.87 13.96 55.48 0.77 -23.09 16 20 Si 0.90 21.19 28.62 -169.99 -4.86 16.32 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.25 -6.09 7.11 56.52 0.40 -5.69 16 24 C 0.05 1.04 6.70 -39.13 -0.26 0.78 16 25 O -0.31 -6.02 10.28 -34.21 -0.35 -6.37 16 26 C 0.03 0.39 9.81 101.05 0.99 1.38 16 27 C -0.14 -2.32 8.77 -38.99 -0.34 -2.66 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 36 H 0.08 0.90 7.42 -51.93 -0.39 0.52 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.41 8.07 -51.92 -0.42 0.00 16 39 H 0.08 0.61 6.10 -51.93 -0.32 0.29 16 40 H 0.13 1.51 4.21 -52.48 -0.22 1.29 16 41 H 0.12 1.80 7.52 -52.49 -0.39 1.40 16 42 H 0.12 1.65 6.15 -52.48 -0.32 1.33 16 43 H 0.14 2.96 5.61 -52.48 -0.29 2.67 16 44 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 47 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 48 H 0.13 1.77 6.28 -52.48 -0.33 1.44 16 LS Contribution 397.37 15.07 5.99 5.99 Total: -1.00 -31.27 397.37 -7.27 -38.54 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.12 Total: 2.30 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -1.13 Total: -11.76 kcal Atomic # 7 Polarization: -30.71 SS G_CDS: 0.25 Total: -30.46 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.39 Total: -20.94 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.86 Total: 16.32 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.27 -7.27 -38.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044250323.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.558 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds