Wall clock time and date at job start Tue Mar 31 2020 17:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 C 1.52999 * 109.47277 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47190 * 180.02562 * 4 3 2 6 6 C 1.46505 * 119.99710 * 269.99188 * 5 4 3 7 7 C 1.34776 * 120.00679 * 89.99805 * 5 4 3 8 8 O 1.21724 * 119.99573 * 359.97438 * 7 5 4 9 9 C 1.46251 * 120.00252 * 179.97438 * 7 5 4 10 10 C 1.35026 * 120.00107 * 179.97438 * 9 7 5 11 11 C 1.46962 * 120.00149 * 179.72723 * 10 9 7 12 12 C 1.40030 * 120.07812 * 359.71821 * 11 10 9 13 13 C 1.37651 * 119.99651 * 179.76999 * 12 11 10 14 14 C 1.39049 * 120.16215 * 0.50959 * 13 12 11 15 15 O 1.35623 * 119.91983 * 179.76593 * 14 13 12 16 16 C 1.34757 * 116.99899 * 354.38344 * 15 14 13 17 17 H 1.08003 * 120.00150 * 5.06176 * 16 15 14 18 18 C 1.38705 * 120.00042 * 185.06816 * 16 15 14 19 19 N 1.31512 * 120.00371 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99940 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47088 * 90.00070 * 20 18 16 22 22 H 1.48497 * 109.47157 * 210.00558 * 20 18 16 23 23 H 1.48499 * 109.47104 * 330.00406 * 20 18 16 24 24 C 1.39623 * 120.16220 * 359.74619 * 14 13 12 25 25 O 1.35954 * 120.00356 * 180.02562 * 24 14 13 26 26 C 1.42900 * 116.99886 * 179.97438 * 25 24 14 27 27 C 1.38073 * 119.99354 * 359.97438 * 24 14 13 28 28 H 1.09006 * 109.47118 * 60.00528 * 1 2 3 29 29 H 1.09002 * 109.46757 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47733 * 299.99984 * 1 2 3 31 31 H 1.08997 * 109.47733 * 240.00016 * 2 1 3 32 32 H 1.09006 * 109.47118 * 119.99472 * 2 1 3 33 33 H 1.08991 * 109.47475 * 59.99844 * 3 2 1 34 34 H 1.09006 * 109.46769 * 299.99685 * 3 2 1 35 35 H 1.08996 * 109.47595 * 59.99291 * 4 3 2 36 36 H 1.09006 * 109.46806 * 299.99469 * 4 3 2 37 37 H 1.08999 * 109.47535 * 270.00691 * 6 5 4 38 38 H 1.09011 * 109.46779 * 30.00190 * 6 5 4 39 39 H 1.09000 * 109.47068 * 150.00047 * 6 5 4 40 40 H 1.08004 * 119.99906 * 359.72502 * 9 7 5 41 41 H 1.07999 * 119.99467 * 359.72069 * 10 9 7 42 42 H 1.08004 * 120.00196 * 0.02562 * 12 11 10 43 43 H 1.08004 * 119.91893 * 180.23858 * 13 12 11 44 44 H 0.97004 * 120.00861 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.47164 * 179.97438 * 26 25 24 46 46 H 1.08997 * 109.47140 * 299.99904 * 26 25 24 47 47 H 1.09002 * 109.47026 * 60.00206 * 26 25 24 48 48 H 1.08004 * 120.08220 * 179.97438 * 27 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3019 3.5151 -1.2685 7 6 4.2833 3.4586 1.1674 8 8 4.0804 2.8844 2.2213 9 6 4.7713 4.8373 1.1679 10 6 4.9963 5.4734 2.3375 11 6 5.4923 6.8568 2.3380 12 6 5.7378 7.5148 1.1265 13 6 6.1979 8.8121 1.1289 14 6 6.4302 9.4688 2.3324 15 8 6.8880 10.7454 2.3290 16 6 7.2071 11.2778 1.1329 17 1 7.0170 10.7221 0.2265 18 6 7.7797 12.5393 1.0658 19 7 8.0906 13.0591 -0.1016 20 14 8.1079 13.5007 2.6335 21 1 9.4692 13.1816 3.1340 22 1 8.0126 14.9555 2.3511 23 1 7.1029 13.1291 3.6616 24 6 6.1928 8.8173 3.5443 25 8 6.4204 9.4626 4.7190 26 6 6.1554 8.7357 5.9205 27 6 5.7257 7.5180 3.5495 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.9330 0.9289 -0.8907 36 1 3.9336 0.9287 0.8892 37 1 5.3312 3.3440 -1.5837 38 1 3.6208 3.1313 -2.0282 39 1 4.1350 4.5842 -1.1376 40 1 4.9555 5.3453 0.2327 41 1 4.8116 4.9656 3.2725 42 1 5.5622 7.0058 0.1903 43 1 6.3832 9.3197 0.1938 44 1 8.4907 13.9416 -0.1486 45 1 6.3787 9.3645 6.7824 46 1 5.1053 8.4447 5.9449 47 1 6.7806 7.8433 5.9506 48 1 5.5420 7.0125 4.4861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044250323.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:00 Heat of formation + Delta-G solvation = -80.592831 kcal Electronic energy + Delta-G solvation = -27484.609565 eV Core-core repulsion = 23505.512885 eV Total energy + Delta-G solvation = -3979.096680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.43904 -40.88762 -39.43756 -38.23138 -37.25590 -35.38722 -34.66719 -34.07370 -31.37633 -30.83547 -29.85876 -27.97509 -27.57167 -27.21146 -25.52123 -23.90891 -23.25587 -22.12678 -21.53445 -19.94178 -19.67917 -19.51628 -18.31706 -17.82609 -17.20524 -16.76550 -16.74117 -16.36029 -16.32096 -16.22111 -15.58008 -15.43435 -15.40410 -15.00387 -14.74978 -14.59758 -14.24739 -13.96818 -13.86747 -13.84887 -13.52053 -13.39829 -13.32003 -13.03684 -12.92278 -12.75222 -12.50615 -12.28632 -12.15105 -12.13342 -12.10709 -12.04655 -11.96305 -11.47135 -11.42818 -11.06471 -10.88695 -10.61100 -9.67516 -9.49641 -8.61372 -8.52727 -6.19753 -0.37379 0.48608 1.04964 1.30948 1.35155 1.53119 2.08384 2.27783 2.30441 2.47750 2.78445 2.93775 3.09482 3.54980 3.86766 3.94397 3.97139 4.05924 4.14966 4.19460 4.28988 4.30732 4.38812 4.40845 4.43478 4.48368 4.52110 4.62275 4.65017 4.72915 4.79980 4.85619 4.87636 4.93460 4.96923 5.05269 5.06774 5.12697 5.24605 5.30315 5.37542 5.43445 5.44582 5.58083 5.64775 5.72915 5.76276 5.99827 6.38996 6.53561 6.81568 7.18034 7.56180 8.57624 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019085 B = 0.002110 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.806760 B =13268.637737 C =14370.864593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.112 3.888 5 N -0.614 5.614 6 C 0.068 3.932 7 C 0.544 3.456 8 O -0.592 6.592 9 C -0.239 4.239 10 C 0.010 3.990 11 C -0.121 4.121 12 C -0.070 4.070 13 C -0.207 4.207 14 C 0.109 3.891 15 O -0.229 6.229 16 C -0.399 4.399 17 H 0.093 0.907 18 C 0.018 3.982 19 N -0.912 5.912 20 Si 0.962 3.038 21 H -0.268 1.268 22 H -0.265 1.265 23 H -0.268 1.268 24 C 0.050 3.950 25 O -0.341 6.341 26 C 0.018 3.982 27 C -0.134 4.134 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.151 0.849 41 H 0.129 0.871 42 H 0.153 0.847 43 H 0.130 0.870 44 H 0.286 0.714 45 H 0.113 0.887 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.192 -22.808 0.018 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.010 4.010 5 N -0.345 5.345 6 C -0.074 4.074 7 C 0.337 3.663 8 O -0.475 6.475 9 C -0.260 4.260 10 C -0.009 4.009 11 C -0.122 4.122 12 C -0.088 4.088 13 C -0.226 4.226 14 C 0.058 3.942 15 O -0.135 6.135 16 C -0.475 4.475 17 H 0.110 0.890 18 C -0.182 4.182 19 N -0.552 5.552 20 Si 0.785 3.215 21 H -0.193 1.193 22 H -0.189 1.189 23 H -0.192 1.192 24 C 0.005 3.995 25 O -0.256 6.256 26 C -0.076 4.076 27 C -0.152 4.152 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.169 0.831 41 H 0.147 0.853 42 H 0.171 0.829 43 H 0.147 0.853 44 H 0.096 0.904 45 H 0.131 0.869 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.097 -22.576 0.602 24.738 hybrid contribution 0.241 0.687 0.328 0.798 sum -9.856 -21.889 0.930 24.024 Atomic orbital electron populations 1.21765 0.95481 1.02097 1.01642 1.21439 0.96256 0.95390 1.02604 1.21901 0.95079 0.98017 1.01648 1.21601 0.94254 0.81664 1.03461 1.47855 1.65191 1.14781 1.06645 1.22125 1.02784 0.98407 0.84065 1.18588 0.77052 0.87281 0.83389 1.90757 1.55172 1.69079 1.32521 1.22958 1.08520 0.94294 1.00186 1.22169 0.89246 0.90687 0.98835 1.18570 1.06781 0.94387 0.92495 1.21268 0.96457 0.92624 0.98470 1.21059 1.07813 0.97021 0.96736 1.19245 0.97180 0.84903 0.92870 1.83555 1.73882 1.23416 1.32692 1.20827 1.41305 1.02180 0.83149 0.88991 1.25163 0.95287 0.96923 1.00863 1.69681 1.41833 1.18550 1.25129 0.85338 0.79386 0.77733 0.79067 1.19313 1.18946 1.19237 1.18243 1.04970 0.92281 0.84020 1.86143 1.83759 1.42610 1.13054 1.23326 1.01724 0.98295 0.84285 1.21284 1.02183 0.91965 0.99808 0.92277 0.91823 0.93753 0.90242 0.92448 0.94329 0.90911 0.87797 0.91908 0.91182 0.88880 0.90073 0.83134 0.85339 0.82905 0.85274 0.90421 0.86857 0.91517 0.91527 0.82244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.12 -1.41 5.93 30.59 0.18 -1.23 16 3 C -0.13 -1.93 5.54 30.59 0.17 -1.76 16 4 C 0.11 1.79 5.41 86.38 0.47 2.26 16 5 N -0.61 -11.38 2.87 -851.98 -2.45 -13.83 16 6 C 0.07 0.77 10.15 127.77 1.30 2.06 16 7 C 0.54 13.90 7.60 86.33 0.66 14.56 16 8 O -0.59 -19.43 15.81 -4.43 -0.07 -19.50 16 9 C -0.24 -5.59 8.60 23.61 0.20 -5.39 16 10 C 0.01 0.27 9.45 23.82 0.23 0.50 16 11 C -0.12 -3.66 5.87 -20.14 -0.12 -3.78 16 12 C -0.07 -2.24 9.40 22.57 0.21 -2.03 16 13 C -0.21 -8.52 9.14 22.33 0.20 -8.31 16 14 C 0.11 5.07 6.67 22.80 0.15 5.22 16 15 O -0.23 -12.53 8.35 -6.63 -0.06 -12.59 16 16 C -0.40 -22.94 9.94 67.93 0.68 -22.26 16 17 H 0.09 5.37 5.42 -2.91 -0.02 5.36 16 18 C 0.02 1.00 5.49 84.85 0.47 1.46 16 19 N -0.91 -53.04 13.96 21.62 0.30 -52.74 16 20 Si 0.96 45.79 28.62 68.60 1.96 47.75 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 24 C 0.05 1.99 6.70 22.57 0.15 2.14 16 25 O -0.34 -13.17 10.28 -79.06 -0.81 -13.98 16 26 C 0.02 0.44 9.81 113.37 1.11 1.55 16 27 C -0.13 -4.21 8.77 22.65 0.20 -4.02 16 28 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.10 1.04 8.07 -2.39 -0.02 1.02 16 36 H 0.06 1.27 7.42 -2.38 -0.02 1.25 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 0.65 8.07 -2.38 -0.02 0.64 16 39 H 0.08 0.89 6.10 -2.39 -0.01 0.87 16 40 H 0.15 2.81 4.21 -2.91 -0.01 2.80 16 41 H 0.13 3.32 7.52 -2.91 -0.02 3.30 16 42 H 0.15 3.71 6.15 -2.91 -0.02 3.69 16 43 H 0.13 5.64 5.61 -2.91 -0.02 5.63 16 44 H 0.29 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.07 1.38 7.66 -2.39 -0.02 1.37 16 47 H 0.07 1.39 7.66 -2.39 -0.02 1.37 16 48 H 0.16 3.89 6.28 -2.91 -0.02 3.87 16 Total: -1.00 -73.39 397.37 6.81 -66.57 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.97 Total: 18.35 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 6.97 Total: -20.04 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -2.15 Total: -66.57 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -0.94 Total: -46.06 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.96 Total: 47.75 kcal Total: -73.39 6.81 -66.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044250323.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.018 kcal (2) G-P(sol) polarization free energy of solvation -73.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds