Wall clock time and date at job start Tue Mar 31 2020 18:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 H 1.08994 * 109.47441 * 54.99921 * 3 2 1 5 5 N 1.46502 * 109.46936 * 294.99707 * 3 2 1 6 6 C 1.34780 * 119.99801 * 85.00744 * 5 3 2 7 7 O 1.21276 * 120.00083 * 359.97438 * 6 5 3 8 8 C 1.50704 * 120.00039 * 179.97438 * 6 5 3 9 9 C 1.50697 * 109.47192 * 179.97438 * 8 6 5 10 10 C 1.38321 * 119.96750 * 270.20776 * 9 8 6 11 11 C 1.38273 * 120.14064 * 180.25451 * 10 9 8 12 12 C 1.38125 * 120.06689 * 359.79028 * 11 10 9 13 13 C 1.38850 * 119.93282 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.07347 * 179.97438 * 13 12 11 15 15 C 1.34828 * 116.99946 * 354.49431 * 14 13 12 16 16 H 1.08006 * 119.99863 * 5.04980 * 15 14 13 17 17 C 1.38651 * 120.00433 * 185.05685 * 15 14 13 18 18 N 1.31555 * 119.99652 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00416 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47168 * 59.99226 * 19 17 15 21 21 H 1.48501 * 109.47263 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46867 * 299.99493 * 19 17 15 23 23 C 1.38075 * 119.96181 * 89.99534 * 9 8 6 24 24 C 1.53004 * 109.47010 * 174.99976 * 3 2 1 25 25 H 1.09006 * 110.27201 * 60.63546 * 24 3 2 26 26 C 1.54944 * 110.30994 * 182.83245 * 24 3 2 27 27 C 1.55300 * 100.94160 * 155.36034 * 26 24 3 28 28 C 1.54378 * 102.25348 * 325.86739 * 27 26 24 29 29 O 1.43236 * 107.58817 * 21.35589 * 28 27 26 30 30 H 1.09003 * 109.47029 * 300.00456 * 1 2 3 31 31 H 1.09004 * 109.46845 * 60.00039 * 1 2 3 32 32 H 1.08999 * 109.47383 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46750 * 240.00270 * 2 1 3 34 34 H 1.08995 * 109.47046 * 120.00051 * 2 1 3 35 35 H 0.96992 * 120.00470 * 265.00017 * 5 3 2 36 36 H 1.09000 * 109.47263 * 59.99390 * 8 6 5 37 37 H 1.08994 * 109.46704 * 299.99693 * 8 6 5 38 38 H 1.08002 * 119.93294 * 0.04467 * 10 9 8 39 39 H 1.08004 * 119.97206 * 179.76750 * 11 10 9 40 40 H 1.08007 * 120.03146 * 180.02562 * 12 11 10 41 41 H 0.97004 * 120.00035 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.03858 * 0.02562 * 23 9 8 43 43 H 1.09007 * 111.12613 * 273.28105 * 26 24 3 44 44 H 1.09003 * 111.12511 * 37.43826 * 26 24 3 45 45 H 1.09002 * 110.84644 * 207.67852 * 27 26 24 46 46 H 1.08999 * 111.02388 * 84.13964 * 27 26 24 47 47 H 1.08997 * 109.83097 * 261.84646 * 28 27 26 48 48 H 1.08995 * 109.83310 * 140.86966 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6525 2.0974 -1.2519 6 6 0.4352 2.6644 -1.3670 7 8 -0.3395 2.6321 -0.4345 8 6 0.0367 3.3387 -2.6546 9 6 -1.3612 3.8861 -2.5232 10 6 -2.4463 3.0990 -2.8644 11 6 -3.7302 3.5994 -2.7503 12 6 -3.9332 4.8862 -2.2909 13 6 -2.8463 5.6771 -1.9430 14 8 -3.0424 6.9423 -1.4918 15 6 -4.3066 7.4104 -1.5124 16 1 -5.1190 6.7592 -1.7994 17 6 -4.5638 8.7279 -1.1653 18 7 -3.5743 9.5211 -0.8153 19 14 -6.3155 9.3763 -1.1932 20 1 -7.1503 8.5877 -0.2518 21 1 -6.3216 10.8036 -0.7831 22 1 -6.8671 9.2530 -2.5664 23 6 -1.5577 5.1713 -2.0584 24 6 3.5649 1.4443 0.1257 25 1 4.0139 0.9177 -0.7164 26 6 4.0967 2.8978 0.1993 27 6 5.4424 2.6819 0.9438 28 6 5.1056 1.5161 1.8981 29 8 3.9637 0.8358 1.3642 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.2719 2.1231 -1.9978 36 1 0.0680 2.6146 -3.4687 37 1 0.7281 4.1541 -2.8667 38 1 -2.2903 2.0925 -3.2238 39 1 -4.5753 2.9838 -3.0209 40 1 -4.9363 5.2763 -2.2016 41 1 -3.7542 10.4429 -0.5728 42 1 -0.7102 5.7843 -1.7893 43 1 4.2605 3.3071 -0.7976 44 1 3.4254 3.5329 0.7773 45 1 5.7229 3.5736 1.5045 46 1 6.2327 2.3983 0.2488 47 1 4.8740 1.9051 2.8897 48 1 5.9506 0.8302 1.9568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089833363.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:12 Heat of formation + Delta-G solvation = -94.148367 kcal Electronic energy + Delta-G solvation = -28489.791622 eV Core-core repulsion = 24510.107131 eV Total energy + Delta-G solvation = -3979.684492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.45546 -39.45848 -38.71555 -36.57327 -35.59470 -32.83771 -32.43473 -32.20190 -31.54258 -30.08570 -29.11971 -27.16127 -25.66341 -25.11440 -22.59214 -21.77156 -21.64964 -21.34587 -20.73274 -20.15610 -17.67532 -17.33980 -17.14901 -16.82162 -16.20596 -15.75579 -15.45374 -15.00304 -14.93580 -14.50799 -14.35690 -13.96857 -13.93568 -13.57828 -13.55008 -13.33829 -13.10961 -12.71647 -12.58298 -12.37028 -12.28638 -12.10526 -11.78383 -11.72950 -11.50722 -11.41439 -11.21250 -11.16985 -10.88951 -10.80200 -10.76639 -10.73222 -10.56702 -10.41988 -9.86702 -9.64449 -9.28277 -9.02010 -8.77928 -8.00130 -7.15395 -6.38825 -3.97747 2.14560 2.45713 2.81573 2.96519 3.16940 3.18271 3.20527 3.71187 4.01634 4.08202 4.24881 4.50734 4.59801 4.70584 4.80749 4.87936 4.95620 5.11489 5.14738 5.15648 5.17852 5.29594 5.33006 5.35410 5.41421 5.50339 5.54075 5.57425 5.71120 5.73402 5.79911 5.82408 5.91227 5.99366 6.01011 6.15376 6.23827 6.39878 6.43492 6.50395 6.68234 6.72240 6.98083 7.13066 7.32851 7.42976 7.48499 7.50882 7.89434 8.06393 8.37826 9.07012 9.78396 10.79515 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.002428 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.031645 B =11531.107595 C =12562.736765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.148 3.852 4 H 0.095 0.905 5 N -0.732 5.732 6 C 0.516 3.484 7 O -0.509 6.509 8 C -0.094 4.094 9 C -0.032 4.032 10 C -0.195 4.195 11 C -0.075 4.075 12 C -0.231 4.231 13 C 0.154 3.846 14 O -0.180 6.180 15 C -0.390 4.390 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.865 5.865 19 Si 0.940 3.060 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.174 4.174 24 C 0.077 3.923 25 H 0.074 0.926 26 C -0.151 4.151 27 C -0.157 4.157 28 C 0.051 3.949 29 O -0.373 6.373 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.396 0.604 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.136 -16.448 -1.622 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.043 3.957 4 H 0.113 0.887 5 N -0.387 5.387 6 C 0.302 3.698 7 O -0.382 6.382 8 C -0.134 4.134 9 C -0.033 4.033 10 C -0.214 4.214 11 C -0.093 4.093 12 C -0.250 4.250 13 C 0.101 3.899 14 O -0.084 6.084 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.501 5.501 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.193 4.193 24 C 0.018 3.982 25 H 0.092 0.908 26 C -0.188 4.188 27 C -0.194 4.194 28 C -0.026 4.026 29 O -0.291 6.291 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.230 0.770 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.143 0.857 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.635 -16.212 -0.639 23.237 hybrid contribution -0.415 0.478 -0.440 0.771 sum 16.221 -15.734 -1.079 22.624 Atomic orbital electron populations 1.21811 0.94630 1.00421 1.03409 1.21883 0.97076 0.95510 1.02170 1.20966 0.92121 0.94299 0.88348 0.88737 1.45941 1.17313 1.59442 1.15980 1.20669 0.80939 0.77960 0.90216 1.90778 1.50433 1.56781 1.40174 1.20594 0.96440 1.00889 0.95449 1.18640 0.92416 0.93250 0.98966 1.20332 0.92393 0.99037 1.09678 1.20674 0.96107 0.94800 0.97742 1.21169 0.99352 0.95494 1.09000 1.19278 0.93047 0.86218 0.91341 1.83974 1.30766 1.22826 1.70818 1.21264 0.81906 0.95679 1.47829 0.89204 1.25263 0.99784 0.94911 0.96569 1.70032 1.31371 1.06585 1.42094 0.85797 0.80548 0.78154 0.79019 1.19541 1.20330 1.19545 1.19932 0.94882 0.96034 1.08471 1.23121 0.94313 0.92767 0.87950 0.90814 1.23312 0.96554 0.96894 1.02067 1.23126 0.98067 0.99302 0.98953 1.23142 0.88527 0.93579 0.97359 1.88409 1.47505 1.55819 1.37406 0.92102 0.92257 0.93810 0.92308 0.90670 0.77034 0.88495 0.88358 0.88006 0.87542 0.85678 0.92083 0.86919 0.89647 0.89790 0.89853 0.90517 0.91151 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.51 37.16 0.32 -1.54 16 2 C -0.13 -1.35 5.55 -26.73 -0.15 -1.49 16 3 C 0.15 1.54 2.03 -67.93 -0.14 1.40 16 4 H 0.09 1.27 7.58 -51.93 -0.39 0.87 16 5 N -0.73 -7.08 4.74 -53.80 -0.25 -7.33 16 6 C 0.52 7.04 6.39 -10.98 -0.07 6.97 16 7 O -0.51 -9.36 13.17 5.56 0.07 -9.28 16 8 C -0.09 -1.20 5.83 -29.03 -0.17 -1.37 16 9 C -0.03 -0.58 4.37 -104.65 -0.46 -1.04 16 10 C -0.20 -3.53 9.70 -39.54 -0.38 -3.92 16 11 C -0.07 -1.45 10.04 -39.61 -0.40 -1.85 16 12 C -0.23 -5.26 9.17 -39.40 -0.36 -5.62 16 13 C 0.15 3.89 6.65 -39.11 -0.26 3.63 16 14 O -0.18 -5.30 9.76 0.05 0.00 -5.30 16 15 C -0.39 -11.21 9.49 30.88 0.29 -10.92 16 16 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 18 N -0.87 -25.88 13.67 55.48 0.76 -25.12 16 19 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 C -0.17 -3.81 9.65 -39.39 -0.38 -4.19 16 24 C 0.08 0.64 3.03 -25.70 -0.08 0.56 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 C -0.15 -1.12 6.29 -24.49 -0.15 -1.27 16 27 C -0.16 -0.97 7.02 -24.79 -0.17 -1.14 16 28 C 0.05 0.37 7.79 37.88 0.30 0.67 16 29 O -0.37 -3.71 10.39 -35.23 -0.37 -4.07 16 30 H 0.06 0.89 7.85 -51.93 -0.41 0.49 16 31 H 0.06 0.84 5.64 -51.93 -0.29 0.55 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.80 7.62 -51.93 -0.40 0.41 16 35 H 0.40 2.52 8.60 -40.82 -0.35 2.17 16 36 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 37 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 38 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.13 2.84 5.64 -52.48 -0.30 2.54 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.11 2.40 8.06 -52.49 -0.42 1.97 16 43 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 44 H 0.08 0.77 8.06 -51.93 -0.42 0.35 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 389.57 15.07 5.87 5.87 Total: -1.00 -34.58 389.57 -8.76 -43.34 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -7.45 Total: 6.08 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.36 Total: -20.14 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.50 Total: -32.46 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.29 Total: -18.66 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.58 -8.76 -43.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089833363.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.810 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds