Wall clock time and date at job start Tue Mar 31 2020 18:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 H 1.08994 * 109.47441 * 54.99921 * 3 2 1 5 5 N 1.46502 * 109.46936 * 294.99707 * 3 2 1 6 6 C 1.34780 * 119.99801 * 85.00744 * 5 3 2 7 7 O 1.21276 * 120.00083 * 359.97438 * 6 5 3 8 8 C 1.50704 * 120.00039 * 179.97438 * 6 5 3 9 9 C 1.50697 * 109.47192 * 179.97438 * 8 6 5 10 10 C 1.38321 * 119.96750 * 270.20776 * 9 8 6 11 11 C 1.38273 * 120.14064 * 180.25451 * 10 9 8 12 12 C 1.38125 * 120.06689 * 359.79028 * 11 10 9 13 13 C 1.38850 * 119.93282 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.07347 * 179.97438 * 13 12 11 15 15 C 1.34828 * 116.99946 * 354.49431 * 14 13 12 16 16 H 1.08006 * 119.99863 * 5.04980 * 15 14 13 17 17 C 1.38651 * 120.00433 * 185.05685 * 15 14 13 18 18 N 1.31555 * 119.99652 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00416 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47168 * 59.99226 * 19 17 15 21 21 H 1.48501 * 109.47263 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46867 * 299.99493 * 19 17 15 23 23 C 1.38075 * 119.96181 * 89.99534 * 9 8 6 24 24 C 1.53004 * 109.47010 * 174.99976 * 3 2 1 25 25 H 1.09006 * 110.27201 * 60.63546 * 24 3 2 26 26 C 1.54944 * 110.30994 * 182.83245 * 24 3 2 27 27 C 1.55300 * 100.94160 * 155.36034 * 26 24 3 28 28 C 1.54378 * 102.25348 * 325.86739 * 27 26 24 29 29 O 1.43236 * 107.58817 * 21.35589 * 28 27 26 30 30 H 1.09003 * 109.47029 * 300.00456 * 1 2 3 31 31 H 1.09004 * 109.46845 * 60.00039 * 1 2 3 32 32 H 1.08999 * 109.47383 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46750 * 240.00270 * 2 1 3 34 34 H 1.08995 * 109.47046 * 120.00051 * 2 1 3 35 35 H 0.96992 * 120.00470 * 265.00017 * 5 3 2 36 36 H 1.09000 * 109.47263 * 59.99390 * 8 6 5 37 37 H 1.08994 * 109.46704 * 299.99693 * 8 6 5 38 38 H 1.08002 * 119.93294 * 0.04467 * 10 9 8 39 39 H 1.08004 * 119.97206 * 179.76750 * 11 10 9 40 40 H 1.08007 * 120.03146 * 180.02562 * 12 11 10 41 41 H 0.97004 * 120.00035 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.03858 * 0.02562 * 23 9 8 43 43 H 1.09007 * 111.12613 * 273.28105 * 26 24 3 44 44 H 1.09003 * 111.12511 * 37.43826 * 26 24 3 45 45 H 1.09002 * 110.84644 * 207.67852 * 27 26 24 46 46 H 1.08999 * 111.02388 * 84.13964 * 27 26 24 47 47 H 1.08997 * 109.83097 * 261.84646 * 28 27 26 48 48 H 1.08995 * 109.83310 * 140.86966 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6525 2.0974 -1.2519 6 6 0.4352 2.6644 -1.3670 7 8 -0.3395 2.6321 -0.4345 8 6 0.0367 3.3387 -2.6546 9 6 -1.3612 3.8861 -2.5232 10 6 -2.4463 3.0990 -2.8644 11 6 -3.7302 3.5994 -2.7503 12 6 -3.9332 4.8862 -2.2909 13 6 -2.8463 5.6771 -1.9430 14 8 -3.0424 6.9423 -1.4918 15 6 -4.3066 7.4104 -1.5124 16 1 -5.1190 6.7592 -1.7994 17 6 -4.5638 8.7279 -1.1653 18 7 -3.5743 9.5211 -0.8153 19 14 -6.3155 9.3763 -1.1932 20 1 -7.1503 8.5877 -0.2518 21 1 -6.3216 10.8036 -0.7831 22 1 -6.8671 9.2530 -2.5664 23 6 -1.5577 5.1713 -2.0584 24 6 3.5649 1.4443 0.1257 25 1 4.0139 0.9177 -0.7164 26 6 4.0967 2.8978 0.1993 27 6 5.4424 2.6819 0.9438 28 6 5.1056 1.5161 1.8981 29 8 3.9637 0.8358 1.3642 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.2719 2.1231 -1.9978 36 1 0.0680 2.6146 -3.4687 37 1 0.7281 4.1541 -2.8667 38 1 -2.2903 2.0925 -3.2238 39 1 -4.5753 2.9838 -3.0209 40 1 -4.9363 5.2763 -2.2016 41 1 -3.7542 10.4429 -0.5728 42 1 -0.7102 5.7843 -1.7893 43 1 4.2605 3.3071 -0.7976 44 1 3.4254 3.5329 0.7773 45 1 5.7229 3.5736 1.5045 46 1 6.2327 2.3983 0.2488 47 1 4.8740 1.9051 2.8897 48 1 5.9506 0.8302 1.9568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089833363.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:11 Heat of formation + Delta-G solvation = -117.556257 kcal Electronic energy + Delta-G solvation = -28490.806665 eV Core-core repulsion = 24510.107131 eV Total energy + Delta-G solvation = -3980.699534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41490 -40.71889 -40.04629 -38.24627 -36.64256 -34.34639 -33.85766 -33.19677 -32.69762 -30.97542 -30.70681 -28.48147 -27.27778 -26.42613 -23.46031 -23.20607 -22.81076 -22.29680 -21.67024 -21.40743 -19.48652 -18.78881 -18.14534 -17.99925 -16.95555 -16.84389 -16.66095 -16.42540 -16.11151 -16.07053 -15.62313 -15.49604 -15.19565 -14.80196 -14.64763 -14.35544 -14.23758 -14.15654 -13.93552 -13.59169 -13.51348 -13.20479 -12.95064 -12.74411 -12.69160 -12.48396 -12.38590 -12.35576 -12.22271 -12.20420 -12.11865 -11.78897 -11.71874 -11.64132 -11.19776 -10.85534 -10.76761 -10.50923 -9.97035 -9.61320 -8.96037 -8.46734 -6.15185 0.54092 0.77866 1.33505 1.44852 1.50134 1.75927 2.07037 2.18039 2.83401 3.02173 3.21312 3.43790 3.46365 3.61652 3.83780 3.95987 4.09150 4.09602 4.12341 4.19337 4.24179 4.32061 4.33835 4.42719 4.48018 4.55986 4.61001 4.68526 4.73728 4.75620 4.80565 4.89875 4.94236 4.97377 5.04340 5.08317 5.09752 5.13545 5.19445 5.24034 5.33132 5.47452 5.56590 5.66997 5.74559 5.77615 6.03404 6.04354 6.25700 6.65281 6.97836 7.40463 7.79887 8.76721 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.002428 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.031645 B =11531.107595 C =12562.736765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C 0.150 3.850 4 H 0.055 0.945 5 N -0.707 5.707 6 C 0.516 3.484 7 O -0.565 6.565 8 C -0.091 4.091 9 C -0.023 4.023 10 C -0.179 4.179 11 C -0.075 4.075 12 C -0.248 4.248 13 C 0.111 3.889 14 O -0.235 6.235 15 C -0.414 4.414 16 H 0.099 0.901 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.019 2.981 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.255 1.255 23 C -0.191 4.191 24 C 0.082 3.918 25 H 0.102 0.898 26 C -0.153 4.153 27 C -0.150 4.150 28 C 0.043 3.957 29 O -0.397 6.397 30 H 0.028 0.972 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.418 0.582 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.116 0.884 41 H 0.272 0.728 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.513 -19.379 -3.989 27.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.044 3.956 4 H 0.073 0.927 5 N -0.362 5.362 6 C 0.304 3.696 7 O -0.443 6.443 8 C -0.130 4.130 9 C -0.024 4.024 10 C -0.197 4.197 11 C -0.093 4.093 12 C -0.267 4.267 13 C 0.061 3.939 14 O -0.142 6.142 15 C -0.491 4.491 16 H 0.117 0.883 17 C -0.221 4.221 18 N -0.561 5.561 19 Si 0.838 3.162 20 H -0.184 1.184 21 H -0.194 1.194 22 H -0.179 1.179 23 C -0.211 4.211 24 C 0.024 3.976 25 H 0.119 0.881 26 C -0.191 4.191 27 C -0.187 4.187 28 C -0.033 4.033 29 O -0.317 6.317 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.256 0.744 36 H 0.161 0.839 37 H 0.140 0.860 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.134 0.866 41 H 0.081 0.919 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.115 0.885 47 H 0.082 0.918 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 18.078 -19.209 -3.051 26.554 hybrid contribution -0.671 1.070 0.251 1.288 sum 17.407 -18.139 -2.800 25.296 Atomic orbital electron populations 1.21742 0.96344 1.00441 1.01297 1.21828 0.95348 0.95582 1.03179 1.20875 0.93749 0.93743 0.87211 0.92675 1.45638 1.16373 1.57777 1.16455 1.20799 0.81444 0.77645 0.89715 1.90787 1.52384 1.59141 1.41986 1.20707 0.93341 1.02646 0.96329 1.19187 0.95786 0.91415 0.95982 1.20956 0.91549 1.00513 1.06720 1.21121 0.98349 0.93511 0.96308 1.21283 0.98332 0.97052 1.10067 1.19895 0.95222 0.85656 0.93140 1.83932 1.31246 1.25208 1.73792 1.21776 0.82389 0.96555 1.48342 0.88348 1.26599 1.04994 0.94738 0.95775 1.70184 1.34241 1.07137 1.44530 0.84651 0.74154 0.77578 0.79826 1.18430 1.19430 1.17947 1.20219 0.93586 0.97928 1.09341 1.23153 0.92472 0.93583 0.88412 0.88063 1.23323 0.96759 0.96014 1.02961 1.23124 0.97755 0.98961 0.98888 1.23307 0.88271 0.94402 0.97364 1.88380 1.48570 1.56481 1.38219 0.95264 0.93320 0.92597 0.89847 0.90963 0.74424 0.83872 0.85997 0.83589 0.83905 0.86627 0.91858 0.87599 0.87628 0.92420 0.89450 0.88508 0.91804 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.51 71.98 0.61 -2.86 16 2 C -0.12 -2.33 5.55 30.59 0.17 -2.16 16 3 C 0.15 2.92 2.03 44.99 0.09 3.02 16 4 H 0.05 1.55 7.58 -2.39 -0.02 1.53 16 5 N -0.71 -11.74 4.74 -442.52 -2.10 -13.84 16 6 C 0.52 13.06 6.39 87.66 0.56 13.62 16 7 O -0.57 -20.86 13.17 -3.02 -0.04 -20.90 16 8 C -0.09 -1.99 5.83 29.10 0.17 -1.82 16 9 C -0.02 -0.79 4.37 -19.88 -0.09 -0.88 16 10 C -0.18 -5.87 9.70 22.30 0.22 -5.65 16 11 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 12 C -0.25 -11.60 9.17 22.39 0.21 -11.39 16 13 C 0.11 5.88 6.65 22.58 0.15 6.03 16 14 O -0.23 -14.88 9.76 -22.72 -0.22 -15.10 16 15 C -0.41 -25.26 9.49 67.92 0.64 -24.62 16 16 H 0.10 5.53 5.20 -2.91 -0.02 5.52 16 17 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 18 N -0.92 -58.37 13.67 21.61 0.30 -58.08 16 19 Si 1.02 44.37 29.55 68.60 2.03 46.40 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 23 C -0.19 -8.63 9.65 22.39 0.22 -8.42 16 24 C 0.08 1.18 3.03 31.26 0.09 1.27 16 25 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 26 C -0.15 -1.99 6.29 32.05 0.20 -1.79 16 27 C -0.15 -1.51 7.02 31.85 0.22 -1.28 16 28 C 0.04 0.57 7.79 72.45 0.56 1.13 16 29 O -0.40 -7.36 10.39 -148.98 -1.55 -8.91 16 30 H 0.03 0.88 7.85 -2.39 -0.02 0.86 16 31 H 0.05 1.29 5.64 -2.38 -0.01 1.28 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.46 7.62 -2.39 -0.02 1.44 16 35 H 0.42 3.41 8.60 -92.71 -0.80 2.61 16 36 H 0.14 1.90 8.09 -2.39 -0.02 1.88 16 37 H 0.12 2.18 8.08 -2.39 -0.02 2.16 16 38 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 39 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 40 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 41 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.06 1.06 8.06 -2.39 -0.02 1.04 16 45 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -84.62 389.57 3.31 -81.31 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.17 Total: 28.39 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 4.72 Total: -39.28 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.80 Total: -71.91 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.81 Total: -44.90 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -84.62 3.31 -81.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089833363.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.245 kcal (2) G-P(sol) polarization free energy of solvation -84.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds