Wall clock time and date at job start Tue Mar 31 2020 18:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47104 * 2 1 4 4 H 1.08994 * 109.47047 * 304.99461 * 3 2 1 5 5 N 1.46490 * 109.47196 * 64.99895 * 3 2 1 6 6 C 1.34783 * 120.00005 * 274.99922 * 5 3 2 7 7 O 1.21280 * 119.99797 * 0.02562 * 6 5 3 8 8 C 1.50702 * 119.99963 * 180.02562 * 6 5 3 9 9 C 1.50693 * 109.46963 * 180.02562 * 8 6 5 10 10 C 1.38301 * 119.93148 * 269.72753 * 9 8 6 11 11 C 1.38099 * 120.07315 * 179.72685 * 10 9 8 12 12 C 1.38884 * 119.92500 * 0.54232 * 11 10 9 13 13 O 1.35750 * 120.06446 * 179.75048 * 12 11 10 14 14 C 1.34838 * 116.99927 * 174.44406 * 13 12 11 15 15 H 1.07998 * 119.99979 * 5.05675 * 14 13 12 16 16 C 1.38649 * 119.99864 * 185.05294 * 14 13 12 17 17 N 1.31556 * 120.00328 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99676 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47408 * 60.00062 * 18 16 14 20 20 H 1.48504 * 109.47430 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47300 * 300.00070 * 18 16 14 22 22 C 1.38878 * 119.86397 * 359.73084 * 12 11 10 23 23 C 1.38098 * 119.93020 * 359.97438 * 22 12 11 24 24 C 1.53000 * 109.46912 * 184.99923 * 3 2 1 25 25 H 1.09000 * 109.99000 * 301.08131 * 24 3 2 26 26 C 1.54100 * 109.87751 * 180.02562 * 24 3 2 27 27 C 1.54814 * 104.30331 * 238.47762 * 26 24 3 28 28 C 1.55220 * 101.98938 * 339.26188 * 27 26 24 29 29 O 1.43741 * 109.88292 * 62.16496 * 24 3 2 30 30 H 1.09000 * 109.46721 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47322 * 299.99980 * 1 2 3 32 32 H 1.09007 * 109.46890 * 60.00488 * 1 2 3 33 33 H 1.09006 * 109.47295 * 239.99751 * 2 1 3 34 34 H 1.09001 * 109.46798 * 119.99942 * 2 1 3 35 35 H 0.97005 * 120.00472 * 94.99717 * 5 3 2 36 36 H 1.09001 * 109.46764 * 299.99748 * 8 6 5 37 37 H 1.08996 * 109.47373 * 60.00146 * 8 6 5 38 38 H 1.08002 * 119.96523 * 0.02562 * 10 9 8 39 39 H 1.07994 * 120.03939 * 180.26996 * 11 10 9 40 40 H 0.97001 * 120.00187 * 180.02562 * 17 16 14 41 41 H 1.08002 * 120.03051 * 179.97438 * 22 12 11 42 42 H 1.08001 * 119.96081 * 180.02562 * 23 22 12 43 43 H 1.08999 * 110.48992 * 357.22024 * 26 24 3 44 44 H 1.08997 * 110.49004 * 119.73904 * 26 24 3 45 45 H 1.08998 * 110.90555 * 97.38576 * 27 26 24 46 46 H 1.09004 * 110.90611 * 220.98148 * 27 26 24 47 47 H 1.09002 * 110.51771 * 278.38516 * 28 27 26 48 48 H 1.08993 * 110.64729 * 155.43980 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0975 1.2517 6 6 0.4351 2.6644 1.3668 7 8 -0.3396 2.6319 0.4343 8 6 0.0366 3.3387 2.6543 9 6 -1.3613 3.8860 2.5230 10 6 -1.5572 5.1753 2.0626 11 6 -2.8372 5.6779 1.9358 12 6 -3.9280 4.8908 2.2818 13 8 -5.1872 5.3837 2.1630 14 6 -6.2036 4.5314 2.4053 15 1 -5.9976 3.5319 2.7586 16 6 -7.5132 4.9383 2.2008 17 7 -7.7642 6.1557 1.7699 18 14 -8.9211 3.7572 2.5357 19 1 -8.8923 3.3443 3.9619 20 1 -10.2120 4.4294 2.2406 21 1 -8.7785 2.5588 1.6705 22 6 -3.7277 3.5985 2.7491 23 6 -2.4455 3.0997 2.8679 24 6 3.5648 1.4443 -0.1257 25 1 4.0076 0.8907 0.7023 26 6 4.0888 2.8935 -0.1260 27 6 4.8486 3.0252 -1.4685 28 6 5.1386 1.5418 -1.8217 29 8 3.9530 0.8487 -1.3750 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2719 2.1232 1.9978 36 1 0.0679 2.6146 3.4685 37 1 0.7280 4.1542 2.8665 38 1 -0.7084 5.7882 1.7974 39 1 -2.9897 6.6832 1.5721 40 1 -8.6804 6.4404 1.6272 41 1 -4.5740 2.9842 3.0194 42 1 -2.2892 2.0946 3.2309 43 1 3.2591 3.5992 -0.0864 44 1 4.7659 3.0545 0.7129 45 1 4.2193 3.4896 -2.2276 46 1 5.7750 3.5845 -1.3378 47 1 6.0168 1.1855 -1.2832 48 1 5.2715 1.4216 -2.8968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152460080.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:22 Heat of formation + Delta-G solvation = -93.497039 kcal Electronic energy + Delta-G solvation = -28394.270700 eV Core-core repulsion = 24414.614452 eV Total energy + Delta-G solvation = -3979.656248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.50541 -39.44569 -38.72263 -36.60857 -35.57870 -32.83196 -32.45996 -32.16212 -31.03506 -30.09761 -29.97062 -26.80744 -25.64298 -24.92763 -22.85518 -21.92118 -21.55938 -21.40761 -20.70952 -20.03571 -17.92823 -17.27703 -17.02830 -16.81835 -16.42907 -15.80641 -15.56235 -15.04000 -14.55307 -14.51848 -14.31103 -14.02595 -13.75119 -13.66581 -13.49343 -13.43087 -13.20226 -12.78175 -12.64600 -12.46649 -12.26518 -12.05451 -11.80952 -11.67555 -11.50799 -11.38104 -11.24189 -11.19352 -10.87660 -10.80892 -10.78085 -10.70669 -10.59026 -10.39638 -10.07461 -9.62110 -9.27723 -9.03761 -8.76793 -8.09439 -7.10751 -6.39696 -3.98276 2.29840 2.31236 2.81763 2.97178 3.16475 3.18806 3.20668 3.72593 4.01471 4.11760 4.21525 4.48971 4.55850 4.61209 4.80802 4.89952 5.01214 5.08259 5.13407 5.14336 5.26517 5.27864 5.30515 5.35143 5.37351 5.39444 5.48546 5.57168 5.69245 5.69601 5.77068 5.79413 5.89409 5.90141 6.01051 6.15336 6.27033 6.37539 6.47204 6.50045 6.57466 6.75863 6.97058 7.10694 7.29215 7.42528 7.48198 7.51693 7.89704 8.05546 8.38536 9.05969 9.76794 10.78406 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.002196 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.903902 B =12747.807077 C =13239.300183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.148 3.852 4 H 0.094 0.906 5 N -0.734 5.734 6 C 0.510 3.490 7 O -0.510 6.510 8 C -0.080 4.080 9 C -0.169 4.169 10 C -0.059 4.059 11 C -0.192 4.192 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.391 4.391 15 H 0.091 0.909 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.232 4.232 23 C -0.056 4.056 24 C 0.073 3.927 25 H 0.071 0.929 26 C -0.154 4.154 27 C -0.156 4.156 28 C 0.046 3.954 29 O -0.366 6.366 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.396 0.604 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.270 0.730 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.657 -9.206 -0.969 28.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.043 3.957 4 H 0.112 0.888 5 N -0.389 5.389 6 C 0.297 3.703 7 O -0.383 6.383 8 C -0.120 4.120 9 C -0.170 4.170 10 C -0.078 4.078 11 C -0.211 4.211 12 C 0.103 3.897 13 O -0.082 6.082 14 C -0.467 4.467 15 H 0.108 0.892 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.251 4.251 23 C -0.074 4.074 24 C 0.014 3.986 25 H 0.089 0.911 26 C -0.191 4.191 27 C -0.194 4.194 28 C -0.031 4.031 29 O -0.284 6.284 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.229 0.771 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.125 0.875 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 25.644 -9.027 -1.903 27.253 hybrid contribution -0.197 -0.512 0.633 0.838 sum 25.447 -9.539 -1.270 27.206 Atomic orbital electron populations 1.21805 0.94535 1.00516 1.03403 1.21892 0.97148 0.95526 1.02113 1.20961 0.92069 0.94299 0.88380 0.88820 1.46022 1.17445 1.59483 1.15923 1.20973 0.80734 0.77986 0.90607 1.90768 1.50340 1.56883 1.40293 1.20409 0.96444 1.00323 0.94788 1.18612 0.92294 0.95478 1.10623 1.20383 0.95480 0.94509 0.97414 1.20149 0.90684 1.00751 1.09505 1.19381 0.86513 0.91673 0.92162 1.83977 1.10015 1.37743 1.76463 1.21273 0.83734 0.95807 1.45875 0.89159 1.25278 0.97669 0.97085 0.96520 1.70031 1.20898 1.16843 1.42127 0.85791 0.79282 0.79321 0.79089 1.19536 1.20310 1.19509 1.21098 0.97207 0.97229 1.09601 1.20495 0.92001 0.97448 0.97489 1.22905 0.94639 0.93164 0.87893 0.91099 1.23020 1.00960 0.96967 0.98185 1.23180 1.01066 0.97500 0.97614 1.23621 0.88297 0.90580 1.00562 1.88899 1.44155 1.58098 1.37276 0.93765 0.92244 0.92123 0.90741 0.92337 0.77095 0.89125 0.89104 0.87484 0.86617 0.92033 0.85649 0.87903 0.89779 0.90518 0.90302 0.90135 0.92145 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.51 37.16 0.32 -1.58 16 2 C -0.13 -1.35 5.55 -26.73 -0.15 -1.50 16 3 C 0.15 1.48 1.87 -67.93 -0.13 1.35 16 4 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 5 N -0.73 -6.73 4.43 -53.81 -0.24 -6.97 16 6 C 0.51 6.63 6.39 -10.98 -0.07 6.56 16 7 O -0.51 -9.07 13.17 5.56 0.07 -9.00 16 8 C -0.08 -0.96 5.83 -29.04 -0.17 -1.13 16 9 C -0.17 -2.91 4.38 -104.58 -0.46 -3.37 16 10 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 11 C -0.19 -4.23 9.99 -39.39 -0.39 -4.62 16 12 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 13 O -0.18 -5.25 9.76 0.03 0.00 -5.25 16 14 C -0.39 -11.22 9.49 30.88 0.29 -10.92 16 15 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -25.86 13.67 55.48 0.76 -25.10 16 18 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 C -0.23 -5.25 9.17 -39.40 -0.36 -5.61 16 23 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 24 C 0.07 0.57 3.03 -26.16 -0.08 0.49 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 C -0.15 -1.00 6.34 -25.20 -0.16 -1.16 16 27 C -0.16 -0.94 7.17 -24.60 -0.18 -1.12 16 28 C 0.05 0.30 7.72 38.33 0.30 0.59 16 29 O -0.37 -3.43 10.55 -35.23 -0.37 -3.80 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.87 5.64 -51.93 -0.29 0.57 16 32 H 0.06 0.90 7.85 -51.93 -0.41 0.50 16 33 H 0.07 0.79 7.62 -51.93 -0.40 0.40 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.40 2.36 8.60 -40.82 -0.35 2.01 16 36 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 42 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.08 0.66 7.46 -51.93 -0.39 0.27 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -34.38 388.81 -8.73 -43.11 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.42 Total: 5.44 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -2.36 Total: -20.30 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.52 Total: -32.07 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.30 Total: -18.05 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.38 -8.73 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152460080.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.391 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds