Wall clock time and date at job start Tue Mar 31 2020 18:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47104 * 2 1 4 4 H 1.08994 * 109.47047 * 304.99461 * 3 2 1 5 5 N 1.46490 * 109.47196 * 64.99895 * 3 2 1 6 6 C 1.34783 * 120.00005 * 274.99922 * 5 3 2 7 7 O 1.21280 * 119.99797 * 0.02562 * 6 5 3 8 8 C 1.50702 * 119.99963 * 180.02562 * 6 5 3 9 9 C 1.50693 * 109.46963 * 180.02562 * 8 6 5 10 10 C 1.38301 * 119.93148 * 269.72753 * 9 8 6 11 11 C 1.38099 * 120.07315 * 179.72685 * 10 9 8 12 12 C 1.38884 * 119.92500 * 0.54232 * 11 10 9 13 13 O 1.35750 * 120.06446 * 179.75048 * 12 11 10 14 14 C 1.34838 * 116.99927 * 174.44406 * 13 12 11 15 15 H 1.07998 * 119.99979 * 5.05675 * 14 13 12 16 16 C 1.38649 * 119.99864 * 185.05294 * 14 13 12 17 17 N 1.31556 * 120.00328 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99676 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47408 * 60.00062 * 18 16 14 20 20 H 1.48504 * 109.47430 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47300 * 300.00070 * 18 16 14 22 22 C 1.38878 * 119.86397 * 359.73084 * 12 11 10 23 23 C 1.38098 * 119.93020 * 359.97438 * 22 12 11 24 24 C 1.53000 * 109.46912 * 184.99923 * 3 2 1 25 25 H 1.09000 * 109.99000 * 301.08131 * 24 3 2 26 26 C 1.54100 * 109.87751 * 180.02562 * 24 3 2 27 27 C 1.54814 * 104.30331 * 238.47762 * 26 24 3 28 28 C 1.55220 * 101.98938 * 339.26188 * 27 26 24 29 29 O 1.43741 * 109.88292 * 62.16496 * 24 3 2 30 30 H 1.09000 * 109.46721 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47322 * 299.99980 * 1 2 3 32 32 H 1.09007 * 109.46890 * 60.00488 * 1 2 3 33 33 H 1.09006 * 109.47295 * 239.99751 * 2 1 3 34 34 H 1.09001 * 109.46798 * 119.99942 * 2 1 3 35 35 H 0.97005 * 120.00472 * 94.99717 * 5 3 2 36 36 H 1.09001 * 109.46764 * 299.99748 * 8 6 5 37 37 H 1.08996 * 109.47373 * 60.00146 * 8 6 5 38 38 H 1.08002 * 119.96523 * 0.02562 * 10 9 8 39 39 H 1.07994 * 120.03939 * 180.26996 * 11 10 9 40 40 H 0.97001 * 120.00187 * 180.02562 * 17 16 14 41 41 H 1.08002 * 120.03051 * 179.97438 * 22 12 11 42 42 H 1.08001 * 119.96081 * 180.02562 * 23 22 12 43 43 H 1.08999 * 110.48992 * 357.22024 * 26 24 3 44 44 H 1.08997 * 110.49004 * 119.73904 * 26 24 3 45 45 H 1.08998 * 110.90555 * 97.38576 * 27 26 24 46 46 H 1.09004 * 110.90611 * 220.98148 * 27 26 24 47 47 H 1.09002 * 110.51771 * 278.38516 * 28 27 26 48 48 H 1.08993 * 110.64729 * 155.43980 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0975 1.2517 6 6 0.4351 2.6644 1.3668 7 8 -0.3396 2.6319 0.4343 8 6 0.0366 3.3387 2.6543 9 6 -1.3613 3.8860 2.5230 10 6 -1.5572 5.1753 2.0626 11 6 -2.8372 5.6779 1.9358 12 6 -3.9280 4.8908 2.2818 13 8 -5.1872 5.3837 2.1630 14 6 -6.2036 4.5314 2.4053 15 1 -5.9976 3.5319 2.7586 16 6 -7.5132 4.9383 2.2008 17 7 -7.7642 6.1557 1.7699 18 14 -8.9211 3.7572 2.5357 19 1 -8.8923 3.3443 3.9619 20 1 -10.2120 4.4294 2.2406 21 1 -8.7785 2.5588 1.6705 22 6 -3.7277 3.5985 2.7491 23 6 -2.4455 3.0997 2.8679 24 6 3.5648 1.4443 -0.1257 25 1 4.0076 0.8907 0.7023 26 6 4.0888 2.8935 -0.1260 27 6 4.8486 3.0252 -1.4685 28 6 5.1386 1.5418 -1.8217 29 8 3.9530 0.8487 -1.3750 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2719 2.1232 1.9978 36 1 0.0679 2.6146 3.4685 37 1 0.7280 4.1542 2.8665 38 1 -0.7084 5.7882 1.7974 39 1 -2.9897 6.6832 1.5721 40 1 -8.6804 6.4404 1.6272 41 1 -4.5740 2.9842 3.0194 42 1 -2.2892 2.0946 3.2309 43 1 3.2591 3.5992 -0.0864 44 1 4.7659 3.0545 0.7129 45 1 4.2193 3.4896 -2.2276 46 1 5.7750 3.5845 -1.3378 47 1 6.0168 1.1855 -1.2832 48 1 5.2715 1.4216 -2.8968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152460080.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:21 Heat of formation + Delta-G solvation = -116.746549 kcal Electronic energy + Delta-G solvation = -28395.278874 eV Core-core repulsion = 24414.614452 eV Total energy + Delta-G solvation = -3980.664422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.39219 -40.71670 -39.99985 -38.25786 -36.58557 -34.40088 -33.68856 -33.01854 -32.32991 -31.75420 -30.70687 -28.23016 -27.12155 -26.23508 -23.62161 -23.48804 -22.78286 -22.05755 -21.65741 -21.23381 -19.83383 -18.85303 -18.07854 -17.76525 -17.05684 -16.73803 -16.48406 -16.42609 -16.10625 -15.93693 -15.55452 -15.49166 -15.06820 -14.85075 -14.52210 -14.43412 -14.34728 -14.26203 -13.98584 -13.62952 -13.56389 -13.05362 -12.95154 -12.73621 -12.62560 -12.49169 -12.33448 -12.28121 -12.22572 -12.14010 -12.08538 -11.85869 -11.74920 -11.46119 -11.17251 -10.84943 -10.70411 -10.63601 -9.94351 -9.74527 -8.88105 -8.47117 -6.15278 0.63222 0.69341 1.33087 1.44398 1.49818 1.82191 2.12834 2.17775 2.83909 3.09168 3.22660 3.50086 3.54077 3.66267 3.89891 3.98480 4.06589 4.07691 4.13925 4.20456 4.21601 4.28863 4.36201 4.50393 4.52498 4.56188 4.61852 4.72614 4.75492 4.82120 4.82725 4.91615 4.95442 4.97951 5.06353 5.10148 5.12938 5.15116 5.19450 5.23022 5.32477 5.45461 5.58248 5.59085 5.73102 5.80187 5.96580 6.03234 6.25359 6.70973 6.97287 7.46605 7.79131 8.76153 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.002196 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.903902 B =12747.807077 C =13239.300183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.151 3.849 4 H 0.058 0.942 5 N -0.709 5.709 6 C 0.512 3.488 7 O -0.567 6.567 8 C -0.078 4.078 9 C -0.142 4.142 10 C -0.057 4.057 11 C -0.207 4.207 12 C 0.111 3.889 13 O -0.234 6.234 14 C -0.414 4.414 15 H 0.099 0.901 16 C -0.025 4.025 17 N -0.922 5.922 18 Si 1.019 2.981 19 H -0.254 1.254 20 H -0.270 1.270 21 H -0.261 1.261 22 C -0.244 4.244 23 C -0.060 4.060 24 C 0.077 3.923 25 H 0.095 0.905 26 C -0.151 4.151 27 C -0.156 4.156 28 C 0.041 3.959 29 O -0.394 6.394 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.418 0.582 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.147 0.853 39 H 0.110 0.890 40 H 0.273 0.727 41 H 0.116 0.884 42 H 0.137 0.863 43 H 0.068 0.932 44 H 0.103 0.897 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.079 0.921 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.825 -11.343 0.806 32.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.046 3.954 4 H 0.076 0.924 5 N -0.364 5.364 6 C 0.300 3.700 7 O -0.445 6.445 8 C -0.117 4.117 9 C -0.143 4.143 10 C -0.075 4.075 11 C -0.227 4.227 12 C 0.061 3.939 13 O -0.141 6.141 14 C -0.490 4.490 15 H 0.117 0.883 16 C -0.222 4.222 17 N -0.560 5.560 18 Si 0.838 3.162 19 H -0.179 1.179 20 H -0.194 1.194 21 H -0.185 1.185 22 C -0.264 4.264 23 C -0.078 4.078 24 C 0.018 3.982 25 H 0.113 0.887 26 C -0.189 4.189 27 C -0.194 4.194 28 C -0.035 4.035 29 O -0.313 6.313 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.255 0.745 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.128 0.872 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.155 0.845 43 H 0.087 0.913 44 H 0.121 0.879 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.097 0.903 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 29.928 -11.187 -0.091 31.951 hybrid contribution -1.073 0.083 0.044 1.077 sum 28.855 -11.105 -0.047 30.919 Atomic orbital electron populations 1.21738 0.96591 1.00247 1.01255 1.21842 0.95072 0.96132 1.03006 1.20850 0.93834 0.93349 0.87398 0.92404 1.45703 1.16562 1.57786 1.16366 1.21070 0.81157 0.77701 0.90080 1.90789 1.52219 1.59277 1.42200 1.20536 0.93341 1.02501 0.95307 1.19251 0.94930 0.94334 1.05786 1.20870 0.94931 0.95649 0.96054 1.20443 0.91719 1.00657 1.09832 1.19945 0.86028 0.93582 0.94392 1.83936 1.11555 1.39152 1.79480 1.21768 0.84487 0.96388 1.46371 0.88346 1.26613 1.00405 0.99141 0.96054 1.70182 1.21631 1.19345 1.44831 0.84650 0.75119 0.76729 0.79704 1.17857 1.19419 1.18526 1.21220 0.98860 0.96350 1.09931 1.20919 0.90873 0.99108 0.96882 1.22931 0.92617 0.94406 0.88214 0.88745 1.23032 1.00943 0.95567 0.99340 1.23191 1.01668 0.97464 0.97057 1.23803 0.87950 0.90547 1.01166 1.88873 1.45452 1.58879 1.38075 0.93030 0.93510 0.95124 0.91033 0.90145 0.74492 0.85455 0.85034 0.83563 0.87160 0.91847 0.86664 0.84543 0.91277 0.87861 0.91896 0.88116 0.90282 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.51 71.98 0.61 -2.98 16 2 C -0.12 -2.33 5.55 30.59 0.17 -2.16 16 3 C 0.15 2.70 1.87 44.99 0.08 2.78 16 4 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16 5 N -0.71 -10.27 4.43 -442.55 -1.96 -12.23 16 6 C 0.51 11.59 6.39 87.66 0.56 12.15 16 7 O -0.57 -19.59 13.17 -3.03 -0.04 -19.63 16 8 C -0.08 -1.45 5.83 29.10 0.17 -1.28 16 9 C -0.14 -4.46 4.38 -19.84 -0.09 -4.55 16 10 C -0.06 -2.00 9.69 22.25 0.22 -1.79 16 11 C -0.21 -9.42 9.99 22.39 0.22 -9.20 16 12 C 0.11 5.86 6.65 22.58 0.15 6.01 16 13 O -0.23 -14.85 9.76 -22.81 -0.22 -15.07 16 14 C -0.41 -25.28 9.49 67.92 0.64 -24.64 16 15 H 0.10 5.55 5.20 -2.91 -0.02 5.53 16 16 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 17 N -0.92 -58.53 13.67 21.61 0.30 -58.23 16 18 Si 1.02 44.62 29.55 68.60 2.03 46.65 16 19 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 C -0.24 -11.37 9.17 22.39 0.21 -11.16 16 23 C -0.06 -2.17 9.69 22.25 0.22 -1.96 16 24 C 0.08 0.95 3.03 30.97 0.09 1.05 16 25 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 26 C -0.15 -1.45 6.34 31.59 0.20 -1.25 16 27 C -0.16 -1.49 7.17 31.98 0.23 -1.26 16 28 C 0.04 0.43 7.72 72.74 0.56 0.99 16 29 O -0.39 -6.56 10.55 -148.98 -1.57 -8.13 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.30 5.64 -2.39 -0.01 1.28 16 32 H 0.03 0.94 7.85 -2.38 -0.02 0.92 16 33 H 0.07 1.43 7.62 -2.38 -0.02 1.41 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.42 2.62 8.60 -92.70 -0.80 1.82 16 36 H 0.13 1.61 8.08 -2.39 -0.02 1.59 16 37 H 0.13 1.54 8.08 -2.39 -0.02 1.52 16 38 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 39 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 40 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 41 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16 42 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 43 H 0.07 0.89 7.46 -2.39 -0.02 0.87 16 44 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 47 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -84.61 388.81 3.41 -81.20 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.17 Total: 25.70 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 4.72 Total: -40.25 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -1.67 Total: -70.46 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.83 Total: -42.84 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -84.61 3.41 -81.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152460080.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.548 kcal (2) G-P(sol) polarization free energy of solvation -84.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds