Wall clock time and date at job start Tue Mar 31 2020 18:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47439 * 2 1 4 4 H 1.08997 * 109.47755 * 55.00078 * 3 2 1 5 5 O 1.42896 * 109.47139 * 294.99450 * 3 2 1 6 6 C 1.35901 * 116.99702 * 95.42789 * 5 3 2 7 7 C 1.38753 * 120.05527 * 1.20822 * 6 5 3 8 8 C 1.38130 * 119.93952 * 179.70046 * 7 6 5 9 9 C 1.38284 * 120.05639 * 0.59414 * 8 7 6 10 10 C 1.38242 * 120.11387 * 359.68587 * 9 8 7 11 11 C 1.38170 * 120.05500 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.02757 * 180.02562 * 11 10 9 13 13 C 1.50708 * 109.47138 * 174.99882 * 3 2 1 14 14 O 1.21280 * 120.00115 * 120.00148 * 13 3 2 15 15 N 1.34773 * 119.99965 * 299.99688 * 13 3 2 16 16 C 1.47428 * 125.64946 * 0.04295 * 15 13 3 17 17 C 1.55116 * 104.94508 * 203.96685 * 16 15 13 18 18 C 1.55154 * 101.48656 * 323.22095 * 17 16 15 19 19 O 1.42899 * 110.72217 * 276.83128 * 18 17 16 20 20 C 1.50699 * 110.72298 * 153.73195 * 18 17 16 21 21 H 1.08005 * 119.99981 * 242.67474 * 20 18 17 22 22 C 1.37877 * 119.99781 * 62.40200 * 20 18 17 23 23 N 1.31513 * 120.00157 * 353.65197 * 22 20 18 24 24 Si 1.86800 * 120.00040 * 173.65590 * 22 20 18 25 25 H 1.48504 * 109.47255 * 94.98598 * 24 22 20 26 26 H 1.48503 * 109.47269 * 214.98685 * 24 22 20 27 27 H 1.48500 * 109.47253 * 334.98676 * 24 22 20 28 28 C 1.47020 * 125.64845 * 180.02562 * 15 13 3 29 29 H 1.08994 * 109.47795 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47043 * 300.00696 * 1 2 3 31 31 H 1.09009 * 109.46554 * 60.00076 * 1 2 3 32 32 H 1.08994 * 109.47370 * 239.99291 * 2 1 3 33 33 H 1.09009 * 109.46554 * 119.99924 * 2 1 3 34 34 H 1.07996 * 120.03063 * 359.97438 * 7 6 5 35 35 H 1.08004 * 119.97038 * 180.29826 * 8 7 6 36 36 H 1.08003 * 119.94053 * 179.69899 * 9 8 7 37 37 H 1.08003 * 119.97142 * 180.02562 * 10 9 8 38 38 H 1.09000 * 109.46863 * 269.97942 * 12 11 10 39 39 H 1.08999 * 109.47017 * 29.97985 * 12 11 10 40 40 H 1.09002 * 109.46923 * 149.97872 * 12 11 10 41 41 H 1.09006 * 110.36809 * 322.93107 * 16 15 13 42 42 H 1.08998 * 110.36526 * 85.25156 * 16 15 13 43 43 H 1.08998 * 111.16474 * 205.12795 * 17 16 15 44 44 H 1.09007 * 110.93788 * 81.21341 * 17 16 15 45 45 H 0.96699 * 114.00048 * 296.15431 * 19 18 17 46 46 H 0.96997 * 120.00384 * 179.97438 * 23 22 20 47 47 H 1.08994 * 109.88241 * 59.56210 * 28 15 13 48 48 H 1.09001 * 110.01229 * 298.46282 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6622 2.0813 -1.2211 6 6 0.5201 2.8177 -1.2043 7 6 -0.2082 2.9439 -0.0300 8 6 -1.3653 3.6982 -0.0141 9 6 -1.8045 4.3171 -1.1701 10 6 -1.0838 4.1882 -2.3427 11 6 0.0775 3.4397 -2.3624 12 6 0.8630 3.3000 -3.6409 13 6 3.5420 1.4441 0.1239 14 8 4.2218 1.9433 -0.7477 15 7 4.1298 0.8910 1.2032 16 6 3.4276 0.2521 2.3311 17 6 4.4151 0.3485 3.5234 18 6 5.7778 0.1302 2.8144 19 8 6.0390 -1.2637 2.6390 20 6 6.8924 0.7864 3.5877 21 1 7.4622 1.5869 3.1394 22 6 7.1811 0.3685 4.8695 23 7 6.4074 -0.5136 5.4635 24 14 8.6711 1.0553 5.7625 25 1 8.2555 2.2021 6.6096 26 1 9.2663 -0.0023 6.6185 27 1 9.6763 1.5122 4.7694 28 6 5.5775 0.8245 1.4507 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 0.1316 2.4565 0.8718 35 1 -1.9300 3.8006 0.9008 36 1 -2.7121 4.9024 -1.1567 37 1 -1.4287 4.6729 -3.2441 38 1 0.5087 2.4287 -4.1917 39 1 0.7283 4.1941 -4.2497 40 1 1.9202 3.1763 -3.4061 41 1 2.5056 0.7882 2.5567 42 1 3.2140 -0.7920 2.1025 43 1 4.2256 -0.4363 4.2558 44 1 4.3698 1.3335 3.9881 45 1 6.1354 -1.7531 3.4674 46 1 6.6106 -0.8079 6.3651 47 1 5.9948 1.8308 1.4820 48 1 6.0639 0.2458 0.6654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:05 Heat of formation + Delta-G solvation = -110.535445 kcal Electronic energy + Delta-G solvation = -29659.920151 eV Core-core repulsion = 25679.525062 eV Total energy + Delta-G solvation = -3980.395089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.98929 -40.80017 -39.17992 -38.25110 -36.31438 -34.83821 -34.22744 -33.43352 -31.59280 -31.10035 -30.19868 -28.74141 -27.62680 -26.68659 -24.31513 -24.04665 -22.54850 -22.22859 -21.58931 -20.47442 -19.41364 -19.09954 -18.18004 -17.23587 -17.00844 -16.95597 -16.59941 -16.51690 -16.22424 -16.07397 -15.44144 -15.12252 -14.81868 -14.80475 -14.54261 -14.07230 -14.02497 -13.93710 -13.68294 -13.55983 -13.31155 -13.21228 -13.12826 -13.10707 -12.99004 -12.80038 -12.67560 -12.46678 -12.32102 -12.28902 -12.05480 -11.98601 -11.86380 -11.45296 -11.25250 -10.87794 -10.67830 -10.14036 -9.74139 -9.72265 -9.04219 -8.25586 -6.39322 0.39888 0.50248 1.35346 1.39717 1.44385 1.48608 1.54481 2.36961 2.46527 2.82889 2.98782 3.25830 3.51892 3.66299 3.78754 3.88258 3.92807 3.95866 4.11928 4.21773 4.23535 4.35820 4.40430 4.43635 4.45560 4.52416 4.59104 4.66064 4.75303 4.76952 4.78647 4.86854 4.98829 4.99473 5.04545 5.13713 5.17299 5.29747 5.31627 5.43582 5.44878 5.54852 5.55877 5.62683 5.75961 5.88421 6.05574 6.35732 6.47028 6.62886 6.95873 7.30606 7.36161 8.79306 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021249 B = 0.002735 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.362882 B =10236.700775 C =10313.985769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.081 3.919 4 H 0.122 0.878 5 O -0.304 6.304 6 C 0.105 3.895 7 C -0.215 4.215 8 C -0.087 4.087 9 C -0.156 4.156 10 C -0.086 4.086 11 C -0.138 4.138 12 C -0.104 4.104 13 C 0.517 3.483 14 O -0.579 6.579 15 N -0.603 5.603 16 C 0.096 3.904 17 C -0.122 4.122 18 C 0.237 3.763 19 O -0.590 6.590 20 C -0.566 4.566 21 H 0.048 0.952 22 C 0.042 3.958 23 N -0.899 5.899 24 Si 0.955 3.045 25 H -0.275 1.275 26 H -0.277 1.277 27 H -0.280 1.280 28 C 0.130 3.870 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.380 0.620 46 H 0.272 0.728 47 H 0.058 0.942 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.141 4.191 -7.389 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.021 3.979 4 H 0.139 0.861 5 O -0.217 6.217 6 C 0.060 3.940 7 C -0.233 4.233 8 C -0.105 4.105 9 C -0.174 4.174 10 C -0.104 4.104 11 C -0.139 4.139 12 C -0.161 4.161 13 C 0.306 3.694 14 O -0.459 6.459 15 N -0.336 5.336 16 C -0.025 4.025 17 C -0.161 4.161 18 C 0.197 3.803 19 O -0.399 6.399 20 C -0.604 4.604 21 H 0.067 0.933 22 C -0.161 4.161 23 N -0.538 5.538 24 Si 0.781 3.219 25 H -0.201 1.201 26 H -0.202 1.202 27 H -0.205 1.205 28 C 0.007 3.993 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.075 0.925 45 H 0.229 0.771 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.748 4.507 -8.547 21.985 hybrid contribution 1.584 0.082 1.244 2.016 sum -18.163 4.589 -7.303 20.107 Atomic orbital electron populations 1.21863 0.92384 1.03453 1.02505 1.22138 0.98909 0.92326 1.04534 1.22270 0.89899 0.96993 0.88706 0.86106 1.86158 1.39584 1.62335 1.33642 1.19220 0.86279 0.93143 0.95349 1.21497 0.98844 1.05705 0.97241 1.21271 0.94842 0.94762 0.99606 1.21415 1.01606 1.01889 0.92472 1.21188 0.92637 0.96820 0.99724 1.19563 0.98516 1.01578 0.94254 1.20594 0.98621 1.02917 0.93952 1.20619 0.90691 0.77695 0.80436 1.90667 1.66543 1.47494 1.41205 1.48538 1.08002 1.56530 1.20529 1.22818 0.96336 0.98210 0.85121 1.23125 0.94890 1.02041 0.96015 1.19540 0.92743 0.79463 0.88561 1.86128 1.94740 1.22331 1.36665 1.21682 1.18448 1.20201 1.00033 0.93342 1.25513 0.98394 0.94962 0.97188 1.69798 1.37479 1.31839 1.14655 0.85604 0.79847 0.78291 0.78200 1.20052 1.20168 1.20510 1.21821 0.80392 0.99350 0.97747 0.90448 0.90638 0.93257 0.91715 0.88029 0.84255 0.83256 0.83220 0.83194 0.90951 0.89872 0.93694 0.88052 0.89874 0.89530 0.92452 0.77091 0.91849 0.92378 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.47 71.98 0.61 -1.95 16 2 C -0.14 -3.29 5.50 30.59 0.17 -3.13 16 3 C 0.08 2.32 1.92 29.85 0.06 2.38 16 4 H 0.12 2.90 5.05 -2.39 -0.01 2.89 16 5 O -0.30 -9.63 8.22 -73.40 -0.60 -10.23 16 6 C 0.10 2.74 5.36 22.51 0.12 2.87 16 7 C -0.21 -4.46 7.24 22.37 0.16 -4.30 16 8 C -0.09 -1.42 10.04 22.25 0.22 -1.20 16 9 C -0.16 -2.37 10.04 22.28 0.22 -2.15 16 10 C -0.09 -1.51 9.70 22.25 0.22 -1.29 16 11 C -0.14 -3.26 5.89 -19.77 -0.12 -3.37 16 12 C -0.10 -2.35 9.79 71.24 0.70 -1.65 16 13 C 0.52 19.98 7.29 87.66 0.64 20.62 16 14 O -0.58 -27.60 16.83 16.01 0.27 -27.33 16 15 N -0.60 -23.17 3.32 -811.36 -2.70 -25.87 16 16 C 0.10 3.07 5.13 86.93 0.45 3.52 16 17 C -0.12 -4.92 5.43 32.06 0.17 -4.75 16 18 C 0.24 11.18 0.85 -10.35 -0.01 11.18 16 19 O -0.59 -28.68 13.08 -148.98 -1.95 -30.63 16 20 C -0.57 -29.45 8.21 25.60 0.21 -29.24 16 21 H 0.05 2.60 7.57 -2.91 -0.02 2.58 16 22 C 0.04 2.08 5.25 84.65 0.44 2.52 16 23 N -0.90 -44.09 10.69 21.45 0.23 -43.86 16 24 Si 0.95 40.71 29.54 68.60 2.03 42.74 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 26 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 28 C 0.13 5.94 6.22 86.73 0.54 6.48 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.08 6.84 -2.38 -0.02 1.06 16 31 H 0.05 0.99 6.35 -2.38 -0.02 0.98 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 2.19 4.88 -2.38 -0.01 2.18 16 34 H 0.14 2.52 4.54 -2.91 -0.01 2.51 16 35 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 36 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 40 H 0.04 1.27 7.53 -2.39 -0.02 1.25 16 41 H 0.10 2.43 7.41 -2.38 -0.02 2.41 16 42 H 0.08 2.45 6.99 -2.39 -0.02 2.44 16 43 H 0.09 3.59 7.47 -2.39 -0.02 3.57 16 44 H 0.06 2.41 8.04 -2.38 -0.02 2.39 16 45 H 0.38 18.28 7.58 -74.06 -0.56 17.72 16 46 H 0.27 12.69 8.31 -92.71 -0.77 11.92 16 47 H 0.06 2.79 7.65 -2.39 -0.02 2.77 16 48 H 0.04 2.15 8.07 -2.39 -0.02 2.14 16 Total: -1.00 -64.91 376.31 2.51 -62.40 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: 0.42 Total: 36.25 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 4.81 Total: -3.48 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -2.47 Total: -69.73 kcal Atomic # 8 Polarization: -65.90 SS G_CDS: -2.28 Total: -68.19 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -64.91 2.51 -62.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.132 kcal (2) G-P(sol) polarization free energy of solvation -64.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds