Wall clock time and date at job start Tue Mar 31 2020 17:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 C 1.52999 * 109.47103 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47242 * 180.02562 * 4 3 2 6 6 C 1.37100 * 119.99743 * 89.99879 * 5 4 3 7 7 H 1.07993 * 120.00177 * 303.72203 * 6 5 4 8 8 C 1.38951 * 119.99571 * 123.72128 * 6 5 4 9 9 N 1.31411 * 120.00278 * 337.82513 * 8 6 5 10 10 Si 1.86798 * 119.99960 * 157.83302 * 8 6 5 11 11 H 1.48496 * 109.47104 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47551 * 119.99994 * 10 8 6 13 13 H 1.48501 * 109.47014 * 239.99873 * 10 8 6 14 14 C 1.34779 * 120.00028 * 270.00409 * 5 4 3 15 15 O 1.21286 * 119.99982 * 4.05668 * 14 5 4 16 16 C 1.50695 * 119.99813 * 184.05603 * 14 5 4 17 17 H 1.09003 * 109.69468 * 48.99542 * 16 14 5 18 18 C 1.53407 * 109.70404 * 288.42635 * 16 14 5 19 19 O 1.42819 * 108.38443 * 175.58111 * 18 16 14 20 20 C 1.35942 * 117.87647 * 49.12914 * 19 18 16 21 21 C 1.39126 * 118.44393 * 162.87871 * 20 19 18 22 22 C 1.37946 * 120.29492 * 179.77171 * 21 20 19 23 23 C 1.38722 * 119.90098 * 359.97438 * 22 21 20 24 24 O 1.35990 * 120.06663 * 180.02562 * 23 22 21 25 25 C 1.42897 * 117.00067 * 0.02885 * 24 23 22 26 26 C 1.38530 * 119.86257 * 0.10337 * 23 22 21 27 27 C 1.38359 * 121.77773 * 342.80381 * 20 19 18 28 28 C 1.50776 * 121.40923 * 0.56049 * 27 20 19 29 29 H 1.09000 * 109.47167 * 59.99173 * 1 2 3 30 30 H 1.08994 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46703 * 299.99549 * 1 2 3 32 32 H 1.08995 * 109.47440 * 120.00136 * 2 1 3 33 33 H 1.09005 * 109.47188 * 240.00663 * 2 1 3 34 34 H 1.08995 * 109.47084 * 300.00354 * 3 2 1 35 35 H 1.09005 * 109.46557 * 60.00277 * 3 2 1 36 36 H 1.09001 * 109.47616 * 300.00549 * 4 3 2 37 37 H 1.08997 * 109.46796 * 60.00149 * 4 3 2 38 38 H 0.96995 * 120.00383 * 177.24937 * 9 8 6 39 39 H 1.08997 * 109.68223 * 295.31025 * 18 16 14 40 40 H 1.09000 * 109.67955 * 55.82736 * 18 16 14 41 41 H 1.07996 * 119.85336 * 359.74438 * 21 20 19 42 42 H 1.08005 * 120.05066 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.47073 * 299.99360 * 25 24 23 44 44 H 1.09002 * 109.47218 * 59.99954 * 25 24 23 45 45 H 1.08998 * 109.47359 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.86018 * 179.97438 * 26 23 22 47 47 H 1.08998 * 109.43798 * 221.98933 * 28 27 20 48 48 H 1.08996 * 109.44274 * 102.11045 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8238 0.0013 6 6 4.2863 3.4697 1.1889 7 1 3.4927 3.5593 1.9158 8 6 5.5385 4.0088 1.4572 9 7 6.5982 3.5554 0.8260 10 14 5.7157 5.3782 2.7153 11 1 4.3824 5.7067 3.2805 12 1 6.6205 4.9344 3.8060 13 1 6.2851 6.5826 2.0592 14 6 4.2834 3.4595 -1.1657 15 8 4.0123 2.9150 -2.2150 16 6 4.8719 4.8468 -1.1666 17 1 5.7498 4.8739 -0.5211 18 6 3.8281 5.8517 -0.6625 19 8 4.4449 7.1369 -0.5765 20 6 5.1507 7.5764 -1.6521 21 6 5.4469 8.9329 -1.7409 22 6 6.1651 9.4195 -2.8135 23 6 6.5947 8.5533 -3.8082 24 8 7.3033 9.0294 -4.8668 25 6 7.5703 10.4330 -4.8903 26 6 6.2991 7.2027 -3.7218 27 6 5.5763 6.7136 -2.6464 28 6 5.2666 5.2389 -2.5926 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 -0.5137 -0.8901 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 3.9331 0.9288 0.8908 37 1 3.9336 0.9286 -0.8891 38 1 7.4662 3.9585 0.9838 39 1 2.9909 5.8921 -1.3593 40 1 3.4720 5.5483 0.3220 41 1 5.1128 9.6079 -0.9670 42 1 6.3932 10.4732 -2.8783 43 1 6.6286 10.9819 -4.8977 44 1 8.1446 10.7085 -4.0058 45 1 8.1418 10.6792 -5.7852 46 1 6.6332 6.5285 -4.4964 47 1 6.1474 4.6721 -2.8940 48 1 4.4431 5.0162 -3.2710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180358754.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:31 Heat of formation + Delta-G solvation = -95.883705 kcal Electronic energy + Delta-G solvation = -29748.460215 eV Core-core repulsion = 25768.700473 eV Total energy + Delta-G solvation = -3979.759742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.54714 -39.28959 -38.33285 -36.08104 -35.42993 -34.26982 -33.40810 -31.74720 -30.31533 -29.65266 -28.30143 -27.10707 -25.19572 -24.97061 -23.92656 -22.40829 -22.25342 -20.64484 -20.04941 -19.05761 -17.58982 -17.35952 -17.00224 -16.36214 -15.68306 -15.42958 -15.23907 -14.87402 -14.70853 -14.36690 -14.28760 -13.96267 -13.77495 -13.46246 -13.20539 -12.89016 -12.74803 -12.67855 -12.52362 -12.41669 -12.35266 -12.00319 -11.74960 -11.62418 -11.38695 -11.21828 -11.09415 -10.73099 -10.68220 -10.66157 -10.52442 -10.40388 -10.32886 -10.01910 -9.89714 -9.86036 -8.86143 -8.53176 -8.36948 -7.42044 -7.37679 -6.50976 -4.38285 1.47437 1.71991 3.10700 3.23036 3.25612 3.35132 3.78256 3.91186 3.98485 4.07671 4.67183 4.77503 4.91650 4.99347 5.08139 5.11733 5.28463 5.34573 5.36126 5.38130 5.45760 5.50264 5.53587 5.69850 5.86041 5.89108 5.90696 6.12092 6.13198 6.16489 6.19483 6.22241 6.23510 6.31664 6.34671 6.48802 6.49544 6.52764 6.58071 6.70432 6.81357 6.84223 6.89771 7.00399 7.07748 7.33223 7.47744 7.90011 7.92230 8.51198 8.81970 9.46269 9.90192 10.49977 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.003645 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.349745 B = 7680.343165 C = 8771.107214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.128 4.128 4 C 0.116 3.884 5 N -0.450 5.450 6 C -0.354 4.354 7 H 0.085 0.915 8 C 0.060 3.940 9 N -0.847 5.847 10 Si 0.891 3.109 11 H -0.262 1.262 12 H -0.280 1.280 13 H -0.266 1.266 14 C 0.522 3.478 15 O -0.603 6.603 16 C -0.139 4.139 17 H 0.135 0.865 18 C 0.075 3.925 19 O -0.313 6.313 20 C 0.104 3.896 21 C -0.117 4.117 22 C -0.180 4.180 23 C 0.085 3.915 24 O -0.321 6.321 25 C 0.030 3.970 26 C -0.116 4.116 27 C -0.106 4.106 28 C -0.063 4.063 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.272 0.728 39 H 0.053 0.947 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.095 0.905 46 H 0.131 0.869 47 H 0.081 0.919 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 8.043 -4.165 9.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.167 4.167 4 C -0.007 4.007 5 N -0.169 5.169 6 C -0.481 4.481 7 H 0.103 0.897 8 C -0.148 4.148 9 N -0.482 5.482 10 Si 0.715 3.285 11 H -0.186 1.186 12 H -0.206 1.206 13 H -0.191 1.191 14 C 0.311 3.689 15 O -0.488 6.488 16 C -0.160 4.160 17 H 0.152 0.848 18 C 0.000 4.000 19 O -0.227 6.227 20 C 0.059 3.941 21 C -0.135 4.135 22 C -0.199 4.199 23 C 0.041 3.959 24 O -0.235 6.235 25 C -0.066 4.066 26 C -0.135 4.135 27 C -0.107 4.107 28 C -0.101 4.101 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.113 0.887 46 H 0.149 0.851 47 H 0.099 0.901 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.148 7.722 -4.616 9.249 hybrid contribution 0.426 0.711 0.734 1.108 sum -1.722 8.433 -3.882 9.442 Atomic orbital electron populations 1.21755 0.96476 1.00803 1.01595 1.21460 0.95231 0.97627 1.01600 1.21909 0.97298 0.95676 1.01800 1.21393 0.92368 0.85959 1.01012 1.43247 1.58988 1.09639 1.04998 1.19270 0.95993 1.35894 0.96975 0.89738 1.25585 0.94849 0.97763 0.96622 1.70061 0.99089 1.36850 1.42169 0.86436 0.79375 0.81888 0.80753 1.18562 1.20634 1.19110 1.19920 0.78683 0.86860 0.83444 1.90507 1.56940 1.69151 1.32210 1.22052 1.02469 0.93838 0.97659 0.84761 1.23051 0.93255 0.79161 1.04545 1.86015 1.64590 1.36354 1.35764 1.18706 0.95040 0.92238 0.88164 1.20316 1.01569 0.92707 0.98953 1.20881 1.03957 0.99361 0.95701 1.18745 0.95844 0.93172 0.88141 1.86053 1.70194 1.24819 1.42429 1.22967 1.00701 0.80066 1.02822 1.20121 1.01552 0.92562 0.99252 1.19861 0.99717 0.96439 0.94727 1.20391 1.02769 0.89224 0.97689 0.92985 0.93351 0.92980 0.92299 0.92299 0.92286 0.92228 0.91715 0.92388 0.91747 0.92868 0.85335 0.85228 0.85382 0.92964 0.92941 0.88671 0.85121 0.90064 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.78 5.93 -26.73 -0.16 -1.94 16 3 C -0.13 -2.31 5.54 -26.73 -0.15 -2.45 16 4 C 0.12 2.47 5.35 -4.04 -0.02 2.45 16 5 N -0.45 -10.72 2.38 -114.82 -0.27 -11.00 16 6 C -0.35 -8.46 6.98 -14.93 -0.10 -8.57 16 7 H 0.09 1.97 7.92 -52.49 -0.42 1.55 16 8 C 0.06 1.44 3.26 -17.47 -0.06 1.39 16 9 N -0.85 -21.84 11.78 55.50 0.65 -21.18 16 10 Si 0.89 19.09 29.54 -169.99 -5.02 14.07 16 11 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 13 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 14 C 0.52 12.75 6.58 -10.99 -0.07 12.68 16 15 O -0.60 -15.71 15.36 5.55 0.09 -15.62 16 16 C -0.14 -3.10 1.83 -91.53 -0.17 -3.27 16 17 H 0.14 3.30 4.54 -51.93 -0.24 3.07 16 18 C 0.07 1.52 6.08 37.37 0.23 1.74 16 19 O -0.31 -6.28 10.27 -19.56 -0.20 -6.48 16 20 C 0.10 1.95 6.47 -39.21 -0.25 1.70 16 21 C -0.12 -1.86 9.93 -39.36 -0.39 -2.25 16 22 C -0.18 -2.55 9.03 -39.51 -0.36 -2.91 16 23 C 0.09 1.31 6.68 -39.29 -0.26 1.05 16 24 O -0.32 -4.43 10.50 -19.71 -0.21 -4.64 16 25 C 0.03 0.27 9.81 101.05 0.99 1.26 16 26 C -0.12 -1.96 9.60 -39.38 -0.38 -2.33 16 27 C -0.11 -1.99 5.75 -104.44 -0.60 -2.59 16 28 C -0.06 -1.29 4.77 -27.81 -0.13 -1.42 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 37 H 0.06 1.30 7.48 -51.93 -0.39 0.91 16 38 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.13 2.65 6.21 -51.93 -0.32 2.33 16 41 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.13 1.40 6.31 -52.48 -0.33 1.07 16 43 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 44 H 0.05 0.43 7.67 -51.93 -0.40 0.04 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.13 2.04 8.06 -52.49 -0.42 1.61 16 47 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 48 H 0.09 1.75 7.54 -51.93 -0.39 1.35 16 LS Contribution 383.88 15.07 5.79 5.79 Total: -1.00 -28.50 383.88 -8.20 -36.70 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -7.51 Total: 9.33 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.52 Total: -6.97 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.38 Total: -32.18 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.32 Total: -26.74 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.50 -8.20 -36.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180358754.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.185 kcal (2) G-P(sol) polarization free energy of solvation -28.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds