Wall clock time and date at job start Tue Mar 31 2020 17:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 C 1.52999 * 109.47103 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47242 * 180.02562 * 4 3 2 6 6 C 1.37100 * 119.99743 * 89.99879 * 5 4 3 7 7 H 1.07993 * 120.00177 * 303.72203 * 6 5 4 8 8 C 1.38951 * 119.99571 * 123.72128 * 6 5 4 9 9 N 1.31411 * 120.00278 * 337.82513 * 8 6 5 10 10 Si 1.86798 * 119.99960 * 157.83302 * 8 6 5 11 11 H 1.48496 * 109.47104 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47551 * 119.99994 * 10 8 6 13 13 H 1.48501 * 109.47014 * 239.99873 * 10 8 6 14 14 C 1.34779 * 120.00028 * 270.00409 * 5 4 3 15 15 O 1.21286 * 119.99982 * 4.05668 * 14 5 4 16 16 C 1.50695 * 119.99813 * 184.05603 * 14 5 4 17 17 H 1.09003 * 109.69468 * 48.99542 * 16 14 5 18 18 C 1.53407 * 109.70404 * 288.42635 * 16 14 5 19 19 O 1.42819 * 108.38443 * 175.58111 * 18 16 14 20 20 C 1.35942 * 117.87647 * 49.12914 * 19 18 16 21 21 C 1.39126 * 118.44393 * 162.87871 * 20 19 18 22 22 C 1.37946 * 120.29492 * 179.77171 * 21 20 19 23 23 C 1.38722 * 119.90098 * 359.97438 * 22 21 20 24 24 O 1.35990 * 120.06663 * 180.02562 * 23 22 21 25 25 C 1.42897 * 117.00067 * 0.02885 * 24 23 22 26 26 C 1.38530 * 119.86257 * 0.10337 * 23 22 21 27 27 C 1.38359 * 121.77773 * 342.80381 * 20 19 18 28 28 C 1.50776 * 121.40923 * 0.56049 * 27 20 19 29 29 H 1.09000 * 109.47167 * 59.99173 * 1 2 3 30 30 H 1.08994 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46703 * 299.99549 * 1 2 3 32 32 H 1.08995 * 109.47440 * 120.00136 * 2 1 3 33 33 H 1.09005 * 109.47188 * 240.00663 * 2 1 3 34 34 H 1.08995 * 109.47084 * 300.00354 * 3 2 1 35 35 H 1.09005 * 109.46557 * 60.00277 * 3 2 1 36 36 H 1.09001 * 109.47616 * 300.00549 * 4 3 2 37 37 H 1.08997 * 109.46796 * 60.00149 * 4 3 2 38 38 H 0.96995 * 120.00383 * 177.24937 * 9 8 6 39 39 H 1.08997 * 109.68223 * 295.31025 * 18 16 14 40 40 H 1.09000 * 109.67955 * 55.82736 * 18 16 14 41 41 H 1.07996 * 119.85336 * 359.74438 * 21 20 19 42 42 H 1.08005 * 120.05066 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.47073 * 299.99360 * 25 24 23 44 44 H 1.09002 * 109.47218 * 59.99954 * 25 24 23 45 45 H 1.08998 * 109.47359 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.86018 * 179.97438 * 26 23 22 47 47 H 1.08998 * 109.43798 * 221.98933 * 28 27 20 48 48 H 1.08996 * 109.44274 * 102.11045 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8238 0.0013 6 6 4.2863 3.4697 1.1889 7 1 3.4927 3.5593 1.9158 8 6 5.5385 4.0088 1.4572 9 7 6.5982 3.5554 0.8260 10 14 5.7157 5.3782 2.7153 11 1 4.3824 5.7067 3.2805 12 1 6.6205 4.9344 3.8060 13 1 6.2851 6.5826 2.0592 14 6 4.2834 3.4595 -1.1657 15 8 4.0123 2.9150 -2.2150 16 6 4.8719 4.8468 -1.1666 17 1 5.7498 4.8739 -0.5211 18 6 3.8281 5.8517 -0.6625 19 8 4.4449 7.1369 -0.5765 20 6 5.1507 7.5764 -1.6521 21 6 5.4469 8.9329 -1.7409 22 6 6.1651 9.4195 -2.8135 23 6 6.5947 8.5533 -3.8082 24 8 7.3033 9.0294 -4.8668 25 6 7.5703 10.4330 -4.8903 26 6 6.2991 7.2027 -3.7218 27 6 5.5763 6.7136 -2.6464 28 6 5.2666 5.2389 -2.5926 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 -0.5137 -0.8901 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 3.9331 0.9288 0.8908 37 1 3.9336 0.9286 -0.8891 38 1 7.4662 3.9585 0.9838 39 1 2.9909 5.8921 -1.3593 40 1 3.4720 5.5483 0.3220 41 1 5.1128 9.6079 -0.9670 42 1 6.3932 10.4732 -2.8783 43 1 6.6286 10.9819 -4.8977 44 1 8.1446 10.7085 -4.0058 45 1 8.1418 10.6792 -5.7852 46 1 6.6332 6.5285 -4.4964 47 1 6.1474 4.6721 -2.8940 48 1 4.4431 5.0162 -3.2710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180358754.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:30 Heat of formation + Delta-G solvation = -110.435810 kcal Electronic energy + Delta-G solvation = -29749.091241 eV Core-core repulsion = 25768.700473 eV Total energy + Delta-G solvation = -3980.390768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.98260 -40.73422 -39.85868 -37.36822 -37.11326 -35.94470 -34.90373 -33.51736 -31.74104 -30.89590 -29.77275 -28.01794 -26.88185 -26.64525 -25.42848 -23.78399 -23.60861 -21.99336 -21.67246 -20.71246 -19.06407 -18.80622 -18.42410 -17.76841 -17.27810 -16.94178 -16.60825 -16.28078 -16.12472 -16.03580 -15.76452 -15.41362 -15.25221 -14.94881 -14.53127 -14.29120 -14.14224 -14.10654 -14.00769 -13.80575 -13.65870 -13.50494 -13.24421 -13.03851 -12.91948 -12.71084 -12.49761 -12.17999 -12.14720 -12.06359 -11.93548 -11.86374 -11.83966 -11.52696 -11.40353 -11.25238 -10.71334 -10.27085 -9.87075 -9.27427 -8.71424 -8.39431 -6.31626 0.20551 0.42908 1.37853 1.49494 1.55333 2.00534 2.24423 2.30954 2.45363 2.67500 2.90944 2.95557 3.67736 3.76480 3.83745 3.95448 4.04172 4.05951 4.11185 4.21341 4.30418 4.31666 4.40065 4.45430 4.46886 4.51996 4.55975 4.71992 4.74767 4.75179 4.83195 4.86384 4.90326 4.97209 4.99350 5.00590 5.06105 5.13575 5.25463 5.27239 5.33390 5.41263 5.43126 5.44728 5.50494 5.56353 6.02658 6.33518 6.54177 6.60635 6.93081 7.54924 8.00603 8.62331 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.003645 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.349745 B = 7680.343165 C = 8771.107214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.114 4.114 4 C 0.112 3.888 5 N -0.456 5.456 6 C -0.359 4.359 7 H 0.093 0.907 8 C 0.033 3.967 9 N -0.881 5.881 10 Si 0.942 3.058 11 H -0.246 1.246 12 H -0.279 1.279 13 H -0.274 1.274 14 C 0.509 3.491 15 O -0.630 6.630 16 C -0.135 4.135 17 H 0.115 0.885 18 C 0.084 3.916 19 O -0.321 6.321 20 C 0.071 3.929 21 C -0.112 4.112 22 C -0.166 4.166 23 C 0.092 3.908 24 O -0.335 6.335 25 C 0.017 3.983 26 C -0.131 4.131 27 C -0.123 4.123 28 C -0.055 4.055 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.272 0.728 39 H 0.060 0.940 40 H 0.124 0.876 41 H 0.153 0.847 42 H 0.169 0.831 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.119 0.881 46 H 0.133 0.867 47 H 0.066 0.934 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 10.449 -3.720 11.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.153 4.153 4 C -0.011 4.011 5 N -0.175 5.175 6 C -0.486 4.486 7 H 0.111 0.889 8 C -0.172 4.172 9 N -0.517 5.517 10 Si 0.765 3.235 11 H -0.169 1.169 12 H -0.205 1.205 13 H -0.200 1.200 14 C 0.299 3.701 15 O -0.517 6.517 16 C -0.157 4.157 17 H 0.132 0.868 18 C 0.009 3.991 19 O -0.235 6.235 20 C 0.027 3.973 21 C -0.130 4.130 22 C -0.185 4.185 23 C 0.047 3.953 24 O -0.250 6.250 25 C -0.077 4.077 26 C -0.150 4.150 27 C -0.124 4.124 28 C -0.093 4.093 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.142 0.858 41 H 0.171 0.829 42 H 0.187 0.813 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.137 0.863 46 H 0.151 0.849 47 H 0.085 0.915 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.561 10.128 -4.158 11.244 hybrid contribution 0.649 0.027 0.484 0.810 sum -1.912 10.155 -3.674 10.967 Atomic orbital electron populations 1.21720 0.94445 1.02284 1.01761 1.21439 0.96959 0.95073 1.02043 1.21765 0.94553 0.98021 1.00959 1.21519 0.94715 0.84755 1.00084 1.43478 1.58552 1.10448 1.05009 1.19507 0.96276 1.35995 0.96862 0.88926 1.26149 0.94334 0.98890 0.97839 1.70134 0.99584 1.38088 1.43855 0.85646 0.79903 0.79201 0.78770 1.16881 1.20514 1.19962 1.20365 0.78667 0.87748 0.83292 1.90469 1.58274 1.69969 1.33002 1.21940 1.02045 0.93265 0.98426 0.86793 1.22863 0.92837 0.79169 1.04213 1.85970 1.65153 1.35624 1.36770 1.19053 0.96440 0.93619 0.88226 1.20652 1.00886 0.91619 0.99884 1.21286 1.01981 1.01113 0.94079 1.18818 0.95058 0.92694 0.88706 1.86055 1.69528 1.27757 1.41617 1.23369 1.02134 0.77525 1.04717 1.20186 1.01880 0.93946 0.98976 1.19713 1.01409 0.95184 0.96075 1.20218 1.01735 0.90932 0.96369 0.93298 0.91224 0.92377 0.91207 0.92551 0.94082 0.91926 0.91563 0.94223 0.91810 0.92146 0.85813 0.82942 0.81328 0.91372 0.91682 0.86323 0.84934 0.91528 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.91 71.98 0.71 -2.68 16 2 C -0.12 -3.35 5.93 30.60 0.18 -3.16 16 3 C -0.11 -4.16 5.54 30.60 0.17 -3.99 16 4 C 0.11 4.93 5.35 86.38 0.46 5.39 16 5 N -0.46 -22.45 2.38 -635.55 -1.51 -23.97 16 6 C -0.36 -17.38 6.98 84.04 0.59 -16.79 16 7 H 0.09 4.28 7.92 -2.91 -0.02 4.26 16 8 C 0.03 1.62 3.26 84.93 0.28 1.89 16 9 N -0.88 -46.63 11.78 21.66 0.26 -46.37 16 10 Si 0.94 39.02 29.54 68.60 2.03 41.05 16 11 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 12 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 13 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 14 C 0.51 25.99 6.58 87.65 0.58 26.57 16 15 O -0.63 -34.48 15.36 -3.05 -0.05 -34.53 16 16 C -0.14 -6.29 1.83 -11.38 -0.02 -6.31 16 17 H 0.11 5.84 4.54 -2.39 -0.01 5.82 16 18 C 0.08 3.50 6.08 72.12 0.44 3.93 16 19 O -0.32 -12.82 10.27 -92.89 -0.95 -13.77 16 20 C 0.07 2.65 6.47 22.51 0.15 2.79 16 21 C -0.11 -3.29 9.93 22.41 0.22 -3.06 16 22 C -0.17 -4.14 9.03 22.32 0.20 -3.94 16 23 C 0.09 2.65 6.68 22.46 0.15 2.80 16 24 O -0.34 -8.38 10.50 -93.44 -0.98 -9.36 16 25 C 0.02 0.24 9.81 113.37 1.11 1.35 16 26 C -0.13 -4.41 9.60 22.40 0.22 -4.20 16 27 C -0.12 -4.68 5.75 -19.75 -0.11 -4.80 16 28 C -0.06 -2.36 4.77 29.90 0.14 -2.22 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.07 2.84 8.04 -2.39 -0.02 2.82 16 37 H 0.04 1.86 7.48 -2.39 -0.02 1.84 16 38 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.12 5.17 6.21 -2.39 -0.01 5.15 16 41 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 42 H 0.17 2.79 6.31 -2.91 -0.02 2.77 16 43 H 0.07 0.78 7.66 -2.38 -0.02 0.77 16 44 H 0.06 0.79 7.67 -2.39 -0.02 0.77 16 45 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 47 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 48 H 0.08 3.34 7.54 -2.39 -0.02 3.32 16 Total: -1.00 -63.24 383.88 5.20 -58.05 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: 0.95 Total: 35.33 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 5.46 Total: -6.43 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -1.26 Total: -70.34 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -1.98 Total: -57.66 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -63.24 5.20 -58.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180358754.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.390 kcal (2) G-P(sol) polarization free energy of solvation -63.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds