Wall clock time and date at job start Tue Mar 31 2020 18:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 N 1.46498 * 109.46976 * 180.02562 * 3 2 1 5 5 C 1.34775 * 120.00094 * 99.33968 * 4 3 2 6 6 O 1.21279 * 120.00009 * 175.51310 * 5 4 3 7 7 C 1.50695 * 120.00167 * 355.79614 * 5 4 3 8 8 F 1.39905 * 109.47193 * 213.84490 * 7 5 4 9 9 F 1.39903 * 109.47124 * 333.84282 * 7 5 4 10 10 C 1.46503 * 119.99766 * 279.33989 * 4 3 2 11 11 H 1.08997 * 110.27531 * 354.06366 * 10 4 3 12 12 C 1.54592 * 110.30758 * 116.25705 * 10 4 3 13 13 C 1.54946 * 102.92149 * 96.95655 * 12 10 4 14 14 N 1.48530 * 103.22197 * 37.41567 * 13 12 10 15 15 C 1.46903 * 110.99535 * 200.27564 * 14 13 12 16 16 C 1.50697 * 109.47456 * 307.39945 * 15 14 13 17 17 O 1.21296 * 119.99946 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00144 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99982 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00234 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99968 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99918 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99816 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47002 * 90.00487 * 23 21 19 25 25 H 1.48502 * 109.46734 * 209.99976 * 23 21 19 26 26 H 1.48496 * 109.47108 * 330.00020 * 23 21 19 27 27 C 1.47895 * 105.82202 * 320.78854 * 14 13 12 28 28 H 1.08998 * 109.47217 * 59.99764 * 1 2 3 29 29 H 1.08999 * 109.46982 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47204 * 300.00641 * 1 2 3 31 31 H 1.08997 * 109.47013 * 239.99231 * 2 1 3 32 32 H 1.09009 * 109.47082 * 119.99749 * 2 1 3 33 33 H 1.08994 * 109.47248 * 59.99829 * 3 2 1 34 34 H 1.09004 * 109.46426 * 299.99808 * 3 2 1 35 35 H 1.09000 * 109.47694 * 93.84062 * 7 5 4 36 36 H 1.09005 * 110.72448 * 215.31399 * 12 10 4 37 37 H 1.09000 * 110.72890 * 338.60306 * 12 10 4 38 38 H 1.08997 * 110.66658 * 278.97811 * 13 12 10 39 39 H 1.09001 * 110.80602 * 155.91579 * 13 12 10 40 40 H 1.09007 * 109.47273 * 67.39733 * 15 14 13 41 41 H 1.08998 * 109.47254 * 187.39278 * 15 14 13 42 42 H 0.97005 * 119.99940 * 359.97438 * 18 16 15 43 43 H 0.96998 * 120.00156 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.92195 * 265.98185 * 27 14 13 45 45 H 1.09000 * 110.08190 * 144.78291 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1784 1.6320 -1.1526 6 8 5.3885 1.7133 -1.1413 7 6 3.4275 1.7494 -2.4538 8 9 4.1890 1.1870 -3.4840 9 9 2.2083 1.0710 -2.3515 10 6 4.2380 1.2363 1.2510 11 1 3.5465 1.2050 2.0929 12 6 5.0616 -0.0701 1.1815 13 6 6.4719 0.4304 0.7796 14 7 6.6038 1.7086 1.5245 15 6 7.6385 2.5624 0.9257 16 6 8.9199 1.7807 0.7927 17 8 8.9669 0.6259 1.1610 18 7 10.0141 2.3648 0.2655 19 6 11.1801 1.6538 0.1450 20 1 11.2219 0.6257 0.4730 21 6 12.3080 2.2559 -0.3990 22 7 12.2573 3.5071 -0.7976 23 14 13.8969 1.2872 -0.5625 24 1 13.9284 0.6071 -1.8822 25 1 15.0537 2.2121 -0.4545 26 1 13.9715 0.2727 0.5193 27 6 5.2759 2.3558 1.4531 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.2410 2.8008 -2.6722 36 1 5.0893 -0.5609 2.1544 37 1 4.6591 -0.7400 0.4217 38 1 6.5267 0.6039 -0.2951 39 1 7.2382 -0.2785 1.0932 40 1 7.3109 2.8934 -0.0599 41 1 7.8068 3.4305 1.5630 42 1 9.9767 3.2884 -0.0287 43 1 13.0447 3.9276 -1.1770 44 1 5.2446 3.0476 0.6113 45 1 5.0697 2.8903 2.3804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691842182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:55 Heat of formation + Delta-G solvation = -131.110520 kcal Electronic energy + Delta-G solvation = -30608.384580 eV Core-core repulsion = 26105.160510 eV Total energy + Delta-G solvation = -4503.224070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.60710 -47.59135 -40.80949 -38.45580 -37.12936 -36.35199 -33.86594 -33.19409 -31.41778 -30.93855 -28.82019 -28.01367 -26.66125 -25.89280 -24.12105 -22.45634 -21.76747 -20.99112 -19.81001 -18.99684 -18.32868 -17.83183 -17.71128 -17.67477 -16.59224 -16.23270 -15.58179 -15.23248 -15.16971 -14.86262 -14.53308 -14.34435 -14.29420 -14.01361 -13.87352 -13.68762 -13.60006 -13.25654 -12.95765 -12.64799 -12.47618 -12.21324 -12.19583 -12.03355 -11.72346 -11.67545 -11.47868 -11.42848 -11.14299 -11.00830 -10.93283 -10.58153 -10.56338 -10.30145 -10.13287 -9.93167 -9.39218 -8.98633 -8.19636 -7.87544 -7.62871 -6.32638 -3.72793 1.89122 2.29486 3.23980 3.31527 3.33949 3.37978 3.61613 4.03969 4.19332 4.21614 4.31233 4.43873 4.52293 4.57872 4.73515 4.79705 4.92918 5.03217 5.07815 5.21631 5.28254 5.36170 5.40954 5.57255 5.62560 5.70475 5.74242 5.78862 5.89577 5.96553 5.99862 6.10400 6.16665 6.35681 6.41939 6.65167 6.82846 6.91855 7.40457 7.48673 7.63902 7.75166 8.16573 8.72774 9.27828 9.65285 10.17969 10.85510 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.020484 B = 0.002935 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.571268 B = 9536.944078 C =10210.654637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.090 3.910 4 N -0.593 5.593 5 C 0.464 3.536 6 O -0.475 6.475 7 C 0.254 3.746 8 F -0.175 7.175 9 F -0.187 7.187 10 C 0.137 3.863 11 H 0.100 0.900 12 C -0.135 4.135 13 C 0.030 3.970 14 N -0.487 5.487 15 C 0.040 3.960 16 C 0.448 3.552 17 O -0.582 6.582 18 N -0.565 5.565 19 C -0.295 4.295 20 H 0.102 0.898 21 C 0.020 3.980 22 N -0.904 5.904 23 Si 0.929 3.071 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.030 3.970 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.392 0.608 43 H 0.270 0.730 44 H 0.052 0.948 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.487 -0.155 -0.326 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C -0.032 4.032 4 N -0.327 5.327 5 C 0.247 3.753 6 O -0.347 6.347 7 C 0.197 3.803 8 F -0.156 7.156 9 F -0.168 7.168 10 C 0.034 3.966 11 H 0.118 0.882 12 C -0.174 4.174 13 C -0.096 4.096 14 N -0.211 5.211 15 C -0.092 4.092 16 C 0.234 3.766 17 O -0.466 6.466 18 N -0.201 5.201 19 C -0.425 4.425 20 H 0.120 0.880 21 C -0.181 4.181 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.195 1.195 27 C -0.099 4.099 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.154 0.846 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.463 -0.869 0.375 25.480 hybrid contribution 0.398 0.336 -1.263 1.367 sum -25.064 -0.533 -0.888 25.086 Atomic orbital electron populations 1.21670 0.95013 1.02036 1.01816 1.21978 0.96265 0.96585 1.03110 1.22253 0.78333 0.98321 1.04318 1.48136 1.07118 1.70275 1.07122 1.21071 0.88877 0.79726 0.85623 1.90846 1.12376 1.46021 1.85503 1.21832 0.76285 0.95873 0.86273 1.93088 1.75927 1.87422 1.59123 1.92954 1.44969 1.82926 1.95966 1.22094 0.93822 0.96441 0.84198 0.88216 1.22987 0.96789 0.95578 1.02018 1.23771 0.95186 0.92227 0.98454 1.64729 1.01856 1.03796 1.50718 1.22021 0.92349 0.96237 0.98562 1.19748 0.84966 0.88184 0.83674 1.90424 1.84276 1.17916 1.54025 1.41838 1.09360 1.14366 1.54578 1.19691 0.86995 0.97798 1.38028 0.87995 1.25248 0.99642 0.96009 0.97167 1.69619 1.30958 1.11571 1.42385 0.85870 0.80672 0.79029 0.78775 1.20489 1.20986 1.19454 1.23162 0.89935 0.95964 1.00883 0.92478 0.92453 0.92694 0.91028 0.91632 0.90482 0.88287 0.84585 0.90209 0.91514 0.90915 0.87424 0.92558 0.89978 0.77523 0.91993 0.93000 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.40 16 2 C -0.14 -0.94 5.70 -26.73 -0.15 -1.09 16 3 C 0.09 0.58 4.82 -4.04 -0.02 0.56 16 4 N -0.59 -5.77 2.43 -164.57 -0.40 -6.17 16 5 C 0.46 5.53 6.71 -10.99 -0.07 5.45 16 6 O -0.47 -7.80 10.16 5.56 0.06 -7.75 16 7 C 0.25 2.30 5.25 36.00 0.19 2.48 16 8 F -0.17 -2.17 17.15 2.25 0.04 -2.13 16 9 F -0.19 -1.49 11.88 2.25 0.03 -1.46 16 10 C 0.14 1.55 3.55 -66.57 -0.24 1.31 16 11 H 0.10 0.87 7.94 -51.93 -0.41 0.46 16 12 C -0.13 -1.86 6.40 -24.87 -0.16 -2.02 16 13 C 0.03 0.57 4.64 -1.89 -0.01 0.56 16 14 N -0.49 -8.92 5.24 -231.89 -1.22 -10.14 16 15 C 0.04 0.81 5.41 -4.98 -0.03 0.78 16 16 C 0.45 11.38 7.49 -10.99 -0.08 11.30 16 17 O -0.58 -16.34 13.09 5.54 0.07 -16.27 16 18 N -0.56 -15.25 5.29 -10.96 -0.06 -15.31 16 19 C -0.30 -8.61 9.68 -14.93 -0.14 -8.75 16 20 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -25.60 13.05 55.50 0.72 -24.88 16 23 Si 0.93 21.87 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 27 C 0.03 0.41 5.72 -2.76 -0.02 0.40 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.59 6.83 -51.93 -0.35 0.24 16 32 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 34 H 0.10 0.53 5.33 -51.93 -0.28 0.25 16 35 H 0.14 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 38 H 0.07 1.54 4.93 -51.97 -0.26 1.28 16 39 H 0.11 2.42 5.96 -51.93 -0.31 2.11 16 40 H 0.06 1.13 6.91 -51.93 -0.36 0.78 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.39 10.20 7.90 -40.82 -0.32 9.87 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 44 H 0.05 0.75 5.84 -51.93 -0.30 0.45 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -34.18 358.34 -7.16 -41.34 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.32 Total: 9.46 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -0.46 Total: 11.06 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.95 Total: -56.49 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.13 Total: -24.02 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.07 Total: -3.60 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.18 -7.16 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691842182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.773 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds