Wall clock time and date at job start Tue Mar 31 2020 18:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 N 1.46498 * 109.46976 * 180.02562 * 3 2 1 5 5 C 1.34775 * 120.00094 * 99.33968 * 4 3 2 6 6 O 1.21279 * 120.00009 * 175.51310 * 5 4 3 7 7 C 1.50695 * 120.00167 * 355.79614 * 5 4 3 8 8 F 1.39905 * 109.47193 * 213.84490 * 7 5 4 9 9 F 1.39903 * 109.47124 * 333.84282 * 7 5 4 10 10 C 1.46503 * 119.99766 * 279.33989 * 4 3 2 11 11 H 1.08997 * 110.27531 * 354.06366 * 10 4 3 12 12 C 1.54592 * 110.30758 * 116.25705 * 10 4 3 13 13 C 1.54946 * 102.92149 * 96.95655 * 12 10 4 14 14 N 1.48530 * 103.22197 * 37.41567 * 13 12 10 15 15 C 1.46903 * 110.99535 * 200.27564 * 14 13 12 16 16 C 1.50697 * 109.47456 * 307.39945 * 15 14 13 17 17 O 1.21296 * 119.99946 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00144 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99982 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00234 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99968 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99918 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99816 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47002 * 90.00487 * 23 21 19 25 25 H 1.48502 * 109.46734 * 209.99976 * 23 21 19 26 26 H 1.48496 * 109.47108 * 330.00020 * 23 21 19 27 27 C 1.47895 * 105.82202 * 320.78854 * 14 13 12 28 28 H 1.08998 * 109.47217 * 59.99764 * 1 2 3 29 29 H 1.08999 * 109.46982 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47204 * 300.00641 * 1 2 3 31 31 H 1.08997 * 109.47013 * 239.99231 * 2 1 3 32 32 H 1.09009 * 109.47082 * 119.99749 * 2 1 3 33 33 H 1.08994 * 109.47248 * 59.99829 * 3 2 1 34 34 H 1.09004 * 109.46426 * 299.99808 * 3 2 1 35 35 H 1.09000 * 109.47694 * 93.84062 * 7 5 4 36 36 H 1.09005 * 110.72448 * 215.31399 * 12 10 4 37 37 H 1.09000 * 110.72890 * 338.60306 * 12 10 4 38 38 H 1.08997 * 110.66658 * 278.97811 * 13 12 10 39 39 H 1.09001 * 110.80602 * 155.91579 * 13 12 10 40 40 H 1.09007 * 109.47273 * 67.39733 * 15 14 13 41 41 H 1.08998 * 109.47254 * 187.39278 * 15 14 13 42 42 H 0.97005 * 119.99940 * 359.97438 * 18 16 15 43 43 H 0.96998 * 120.00156 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.92195 * 265.98185 * 27 14 13 45 45 H 1.09000 * 110.08190 * 144.78291 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1784 1.6320 -1.1526 6 8 5.3885 1.7133 -1.1413 7 6 3.4275 1.7494 -2.4538 8 9 4.1890 1.1870 -3.4840 9 9 2.2083 1.0710 -2.3515 10 6 4.2380 1.2363 1.2510 11 1 3.5465 1.2050 2.0929 12 6 5.0616 -0.0701 1.1815 13 6 6.4719 0.4304 0.7796 14 7 6.6038 1.7086 1.5245 15 6 7.6385 2.5624 0.9257 16 6 8.9199 1.7807 0.7927 17 8 8.9669 0.6259 1.1610 18 7 10.0141 2.3648 0.2655 19 6 11.1801 1.6538 0.1450 20 1 11.2219 0.6257 0.4730 21 6 12.3080 2.2559 -0.3990 22 7 12.2573 3.5071 -0.7976 23 14 13.8969 1.2872 -0.5625 24 1 13.9284 0.6071 -1.8822 25 1 15.0537 2.2121 -0.4545 26 1 13.9715 0.2727 0.5193 27 6 5.2759 2.3558 1.4531 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.2410 2.8008 -2.6722 36 1 5.0893 -0.5609 2.1544 37 1 4.6591 -0.7400 0.4217 38 1 6.5267 0.6039 -0.2951 39 1 7.2382 -0.2785 1.0932 40 1 7.3109 2.8934 -0.0599 41 1 7.8068 3.4305 1.5630 42 1 9.9767 3.2884 -0.0287 43 1 13.0447 3.9276 -1.1770 44 1 5.2446 3.0476 0.6113 45 1 5.0697 2.8903 2.3804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691842182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:54 Heat of formation + Delta-G solvation = -156.676601 kcal Electronic energy + Delta-G solvation = -30609.493208 eV Core-core repulsion = 26105.160510 eV Total energy + Delta-G solvation = -4504.332698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.34898 -48.37739 -41.83055 -40.24515 -38.45640 -37.28643 -35.94256 -34.00989 -33.34215 -32.38293 -29.89984 -29.03628 -28.06612 -26.72952 -25.97750 -23.27217 -22.55936 -22.32379 -21.14791 -20.58619 -19.83368 -19.06631 -18.61608 -18.43776 -17.78734 -17.42273 -17.11194 -16.42330 -16.29394 -16.26600 -15.99649 -15.77593 -15.58223 -15.08490 -14.95763 -14.56697 -14.56034 -14.43680 -14.21276 -13.90626 -13.63639 -13.43185 -13.29698 -13.13338 -12.99867 -12.93404 -12.70020 -12.57340 -12.45401 -12.38815 -12.14511 -12.06757 -11.88452 -11.81548 -11.49214 -11.40271 -10.87527 -10.19625 -10.02321 -9.87329 -9.12023 -8.48254 -5.97277 1.00342 1.35769 1.38246 1.50733 1.52376 2.03023 2.27366 2.61320 2.92325 2.98719 3.18049 3.39650 3.47996 3.61392 3.71937 3.76216 3.96106 4.13473 4.18128 4.31835 4.40071 4.45961 4.51194 4.52408 4.54993 4.66440 4.71622 4.78981 4.84101 4.93711 5.00807 5.21747 5.25924 5.29634 5.30607 5.39026 5.47324 5.54399 5.87623 5.97194 6.08797 6.17203 6.58716 6.82195 7.10678 7.52933 8.09522 8.69782 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.020484 B = 0.002935 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.571268 B = 9536.944078 C =10210.654637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.086 3.914 4 N -0.583 5.583 5 C 0.455 3.545 6 O -0.528 6.528 7 C 0.259 3.741 8 F -0.198 7.198 9 F -0.179 7.179 10 C 0.146 3.854 11 H 0.142 0.858 12 C -0.124 4.124 13 C 0.032 3.968 14 N -0.498 5.498 15 C 0.056 3.944 16 C 0.442 3.558 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.333 4.333 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.996 3.004 24 H -0.272 1.272 25 H -0.267 1.267 26 H -0.272 1.272 27 C 0.030 3.970 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.183 0.817 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.103 0.897 42 H 0.394 0.606 43 H 0.278 0.722 44 H 0.047 0.953 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.893 0.934 0.207 28.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C -0.034 4.034 4 N -0.315 5.315 5 C 0.240 3.760 6 O -0.405 6.405 7 C 0.202 3.798 8 F -0.179 7.179 9 F -0.160 7.160 10 C 0.043 3.957 11 H 0.159 0.841 12 C -0.163 4.163 13 C -0.096 4.096 14 N -0.223 5.223 15 C -0.076 4.076 16 C 0.230 3.770 17 O -0.500 6.500 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.819 3.181 24 H -0.197 1.197 25 H -0.192 1.192 26 H -0.197 1.197 27 C -0.099 4.099 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.200 0.800 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.121 0.879 42 H 0.228 0.772 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -27.940 0.238 0.911 27.956 hybrid contribution 1.062 -0.026 -1.414 1.769 sum -26.878 0.212 -0.503 26.883 Atomic orbital electron populations 1.21637 0.93669 1.02145 1.02684 1.21940 0.97357 0.96486 1.01968 1.22546 0.75844 0.98540 1.06499 1.48226 1.08482 1.68752 1.06058 1.21649 0.88499 0.78787 0.87075 1.90833 1.14696 1.48577 1.86433 1.22052 0.75718 0.97887 0.84101 1.93040 1.76806 1.88012 1.60047 1.92973 1.44093 1.83111 1.95813 1.22065 0.93954 0.93485 0.86178 0.84053 1.22875 0.94025 0.97081 1.02304 1.23496 0.97018 0.92001 0.97046 1.64710 1.03812 1.03679 1.50074 1.21849 0.90301 0.96132 0.99301 1.20725 0.86118 0.88141 0.82064 1.90419 1.85112 1.19554 1.54952 1.41923 1.09550 1.14406 1.55282 1.19665 0.88772 0.97452 1.40340 0.90408 1.26096 1.02383 0.97035 0.95940 1.69685 1.32196 1.12485 1.41969 0.84897 0.76694 0.77807 0.78720 1.19708 1.19166 1.19679 1.23291 0.87970 0.96607 1.02005 0.92049 0.92812 0.91361 0.93061 0.92005 0.87746 0.86777 0.80014 0.89166 0.91514 0.93352 0.92187 0.92543 0.87864 0.77243 0.91257 0.93441 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.91 71.98 0.71 -0.34 16 2 C -0.14 -1.47 5.70 30.60 0.17 -1.30 16 3 C 0.09 0.78 4.82 86.38 0.42 1.19 16 4 N -0.58 -9.85 2.43 -792.97 -1.93 -11.78 16 5 C 0.46 10.34 6.71 87.66 0.59 10.93 16 6 O -0.53 -17.72 10.16 -3.03 -0.03 -17.75 16 7 C 0.26 4.21 5.25 71.23 0.37 4.58 16 8 F -0.20 -4.88 17.15 44.97 0.77 -4.11 16 9 F -0.18 -2.43 11.88 44.97 0.53 -1.89 16 10 C 0.15 2.90 3.55 45.87 0.16 3.06 16 11 H 0.14 1.74 7.94 -2.39 -0.02 1.72 16 12 C -0.12 -3.36 6.40 31.80 0.20 -3.15 16 13 C 0.03 1.25 4.64 86.65 0.40 1.66 16 14 N -0.50 -18.34 5.24 -887.57 -4.65 -22.99 16 15 C 0.06 2.31 5.41 85.56 0.46 2.77 16 16 C 0.44 23.50 7.49 87.66 0.66 24.16 16 17 O -0.61 -36.60 13.09 -3.08 -0.04 -36.64 16 18 N -0.57 -32.36 5.29 -306.98 -1.62 -33.98 16 19 C -0.33 -20.18 9.68 84.04 0.81 -19.37 16 20 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 21 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 22 N -0.92 -52.50 13.05 21.66 0.28 -52.22 16 23 Si 1.00 45.17 29.55 68.60 2.03 47.20 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 27 C 0.03 0.76 5.72 86.45 0.49 1.26 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.05 0.76 6.83 -2.39 -0.02 0.74 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.10 0.48 8.09 -2.39 -0.02 0.46 16 34 H 0.11 0.74 5.33 -2.39 -0.01 0.73 16 35 H 0.18 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 38 H 0.05 2.19 4.93 -2.94 -0.01 2.17 16 39 H 0.06 2.91 5.96 -2.39 -0.01 2.89 16 40 H 0.06 2.34 6.91 -2.38 -0.02 2.33 16 41 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 42 H 0.39 21.28 7.90 -92.70 -0.73 20.55 16 43 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.05 1.29 5.84 -2.39 -0.01 1.28 16 45 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -79.46 358.34 1.56 -77.90 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.30 Total: 31.21 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 5.93 Total: 25.06 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -7.93 Total: -120.98 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -0.07 Total: -54.39 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 1.31 Total: -6.01 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -79.46 1.56 -77.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691842182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.776 kcal (2) G-P(sol) polarization free energy of solvation -79.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds