Wall clock time and date at job start Tue Mar 31 2020 18:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39903 * 109.46718 * 2 1 4 4 F 1.39903 * 109.46615 * 240.00340 * 2 1 3 5 5 C 1.53000 * 109.47096 * 120.00294 * 2 1 3 6 6 C 1.50705 * 109.46509 * 179.97438 * 5 2 1 7 7 O 1.21278 * 120.00313 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99524 * 180.02562 * 6 5 2 9 9 C 1.47422 * 125.65104 * 5.00311 * 8 6 5 10 10 C 1.54904 * 104.83325 * 155.91838 * 9 8 6 11 11 C 1.55166 * 101.57934 * 37.01281 * 10 9 8 12 12 C 1.47023 * 125.64657 * 185.06453 * 8 6 5 13 13 H 1.08996 * 109.88124 * 300.42760 * 12 8 6 14 14 C 1.53002 * 109.88211 * 61.59261 * 12 8 6 15 15 N 1.46901 * 109.46923 * 182.29775 * 14 12 8 16 16 C 1.46900 * 111.00034 * 185.06274 * 15 14 12 17 17 C 1.50704 * 109.47264 * 180.02562 * 16 15 14 18 18 O 1.21287 * 119.99548 * 359.97438 * 17 16 15 19 19 N 1.34772 * 119.99839 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99665 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00036 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99910 * 179.97438 * 20 19 17 23 23 N 1.31407 * 119.99874 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99829 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47334 * 89.99739 * 24 22 20 26 26 H 1.48501 * 109.47059 * 209.99439 * 24 22 20 27 27 H 1.48501 * 109.47427 * 329.99410 * 24 22 20 28 28 H 1.08998 * 109.46714 * 299.99512 * 1 2 3 29 29 H 1.08993 * 109.47507 * 59.99650 * 1 2 3 30 30 H 1.09004 * 109.46990 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47007 * 60.00155 * 5 2 1 32 32 H 1.09001 * 109.46996 * 299.99791 * 5 2 1 33 33 H 1.08998 * 110.36458 * 37.08196 * 9 8 6 34 34 H 1.09001 * 110.37028 * 274.76014 * 9 8 6 35 35 H 1.08996 * 111.01015 * 278.94296 * 10 9 8 36 36 H 1.09003 * 111.00559 * 155.08352 * 10 9 8 37 37 H 1.09002 * 110.71544 * 82.85831 * 11 10 9 38 38 H 1.08995 * 110.72191 * 205.95466 * 11 10 9 39 39 H 1.08998 * 109.47483 * 302.29974 * 14 12 8 40 40 H 1.08998 * 109.47478 * 62.29906 * 14 12 8 41 41 H 1.00903 * 110.99544 * 61.11217 * 15 14 12 42 42 H 1.09005 * 109.46926 * 299.99894 * 16 15 14 43 43 H 1.08997 * 109.47319 * 59.99769 * 16 15 14 44 44 H 0.96996 * 120.00195 * 359.97438 * 19 17 16 45 45 H 0.97008 * 120.00180 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0401 -0.7213 1.2492 6 6 3.5471 -0.7218 1.2488 7 8 4.1535 -0.1973 0.3387 8 7 4.2210 -1.3060 2.2592 9 6 3.6172 -2.0670 3.3681 10 6 4.7435 -3.0085 3.8626 11 6 5.9948 -2.1035 3.7112 12 6 5.6801 -1.2887 2.4390 13 1 6.1653 -1.7459 1.5766 14 6 6.1663 0.1519 2.6101 15 7 7.6301 0.1632 2.7338 16 6 8.1238 1.5169 3.0197 17 6 9.6258 1.4890 3.1389 18 8 10.2259 0.4442 2.9998 19 7 10.3022 2.6250 3.4009 20 6 11.6686 2.5995 3.5099 21 1 12.2030 1.6693 3.3852 22 6 12.3660 3.7707 3.7795 23 7 13.6756 3.7462 3.8844 24 14 11.4416 5.3797 3.9944 25 1 11.0831 5.5575 5.4244 26 1 12.3025 6.5075 3.5560 27 1 10.2044 5.3533 3.1734 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6768 -1.7489 1.2491 32 1 1.6767 -0.2075 2.1392 33 1 2.7669 -2.6479 3.0106 34 1 3.3082 -1.3929 4.1669 35 1 4.8212 -3.8916 3.2285 36 1 4.5885 -3.2898 4.9042 37 1 6.1015 -1.4457 4.5738 38 1 6.8925 -2.7063 3.5742 39 1 5.8705 0.7408 1.7420 40 1 5.7225 0.5809 3.5085 41 1 8.0658 -0.2132 1.9052 42 1 7.8363 2.1871 2.2095 43 1 7.6912 1.8714 3.9552 44 1 9.8222 3.4604 3.5125 45 1 14.1625 4.5638 4.0731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753601432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:03 Heat of formation + Delta-G solvation = -164.765600 kcal Electronic energy + Delta-G solvation = -28969.328497 eV Core-core repulsion = 24464.645034 eV Total energy + Delta-G solvation = -4504.683463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.14829 -47.13344 -40.49646 -38.45637 -37.79768 -35.35004 -33.89593 -33.69465 -31.90489 -31.63757 -30.48064 -28.81693 -26.96347 -24.87653 -23.70748 -22.70363 -22.25666 -21.07440 -19.60137 -19.19575 -18.29241 -17.94611 -17.67765 -17.07607 -16.60786 -16.25319 -15.76190 -15.56378 -15.24402 -14.98339 -14.69789 -14.12323 -14.01174 -13.92909 -13.78370 -13.49299 -13.46331 -13.32161 -13.18163 -13.13372 -12.99769 -12.68014 -12.54766 -12.51911 -12.36464 -12.02221 -11.76919 -11.65982 -11.57369 -11.33368 -11.17040 -10.94649 -10.90532 -10.56431 -10.15124 -9.94703 -9.54039 -8.99546 -8.53368 -8.16052 -8.09506 -6.28196 -3.79374 2.26558 2.47234 3.06116 3.09707 3.17619 3.33890 3.60139 3.77970 3.82679 3.96048 4.12818 4.17724 4.30188 4.32575 4.55332 4.63502 4.69298 4.71866 4.87325 4.91826 5.00080 5.06853 5.17041 5.24312 5.24815 5.28655 5.32897 5.47171 5.57879 5.67675 5.71236 5.77128 5.86410 5.89202 5.97017 6.12274 6.18552 7.06508 7.18486 7.58552 7.61700 7.81727 8.17653 8.63096 8.98027 9.45756 9.86237 10.84955 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.015688 B = 0.002385 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.390650 B =11735.014717 C =12931.381445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.306 3.694 3 F -0.191 7.191 4 F -0.192 7.192 5 C -0.185 4.185 6 C 0.526 3.474 7 O -0.515 6.515 8 N -0.615 5.615 9 C 0.097 3.903 10 C -0.137 4.137 11 C -0.112 4.112 12 C 0.142 3.858 13 H 0.078 0.922 14 C 0.050 3.950 15 N -0.663 5.663 16 C 0.050 3.950 17 C 0.452 3.548 18 O -0.564 6.564 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.352 0.648 42 H 0.045 0.955 43 H 0.086 0.914 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.104 -10.529 -0.875 33.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.269 3.731 3 F -0.172 7.172 4 F -0.173 7.173 5 C -0.226 4.226 6 C 0.313 3.687 7 O -0.390 6.390 8 N -0.350 5.350 9 C -0.025 4.025 10 C -0.175 4.175 11 C -0.150 4.150 12 C 0.039 3.961 13 H 0.096 0.904 14 C -0.081 4.081 15 N -0.296 5.296 16 C -0.083 4.083 17 C 0.238 3.762 18 O -0.446 6.446 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.171 0.829 42 H 0.063 0.937 43 H 0.104 0.896 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -31.175 -10.967 -0.875 33.060 hybrid contribution -0.657 1.937 -0.644 2.145 sum -31.833 -9.030 -1.519 33.124 Atomic orbital electron populations 1.22802 0.91178 1.05512 1.05756 1.20624 0.93062 0.76157 0.83277 1.93062 1.90559 1.36857 1.96758 1.93055 1.90576 1.80734 1.52947 1.22852 0.94937 1.04920 0.99850 1.19828 0.88883 0.78612 0.81343 1.90825 1.69720 1.44147 1.34315 1.48525 1.07828 1.53756 1.24907 1.22394 0.96873 0.94059 0.89220 1.22841 0.94685 0.97889 1.02087 1.22576 0.97845 0.97723 0.96874 1.21515 0.79179 0.96252 0.99172 0.90387 1.22244 0.89219 0.95712 1.00931 1.60002 1.03425 1.21366 1.44816 1.21686 0.95097 0.90252 1.01307 1.19686 0.88062 0.84617 0.83883 1.90557 1.69595 1.30463 1.53995 1.42207 1.07927 1.08109 1.64850 1.19434 0.79692 0.98346 1.45796 0.86271 1.25038 0.95504 0.98006 0.97662 1.69623 1.05789 1.28749 1.48051 0.86668 0.79806 0.83928 0.78984 1.19617 1.20195 1.19504 0.89116 0.89550 0.89149 0.86065 0.85931 0.90702 0.91026 0.90601 0.89624 0.89812 0.89265 0.94108 0.91141 0.82907 0.93712 0.89559 0.79686 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.83 9.38 37.16 0.35 -0.48 16 2 C 0.31 2.67 1.85 -26.73 -0.05 2.62 16 3 F -0.19 -2.34 16.15 2.25 0.04 -2.30 16 4 F -0.19 -2.29 16.14 2.25 0.04 -2.26 16 5 C -0.19 -1.22 4.39 -27.88 -0.12 -1.34 16 6 C 0.53 5.93 7.35 -10.98 -0.08 5.85 16 7 O -0.52 -8.33 14.03 5.56 0.08 -8.26 16 8 N -0.61 -5.90 3.07 -163.02 -0.50 -6.40 16 9 C 0.10 0.55 6.65 -2.53 -0.02 0.54 16 10 C -0.14 -0.83 7.09 -24.58 -0.17 -1.01 16 11 C -0.11 -1.05 6.22 -24.89 -0.15 -1.20 16 12 C 0.14 1.62 3.09 -66.95 -0.21 1.41 16 13 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 14 C 0.05 0.67 5.04 -3.82 -0.02 0.65 16 15 N -0.66 -10.77 5.83 -115.06 -0.67 -11.44 16 16 C 0.05 0.87 6.16 -4.97 -0.03 0.84 16 17 C 0.45 10.58 7.82 -10.99 -0.09 10.49 16 18 O -0.56 -15.43 15.78 5.55 0.09 -15.34 16 19 N -0.59 -14.51 5.09 -10.96 -0.06 -14.57 16 20 C -0.30 -8.78 10.16 -14.93 -0.15 -8.93 16 21 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -26.17 13.96 55.50 0.77 -25.39 16 24 Si 0.88 19.83 27.74 -169.99 -4.71 15.11 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -5.60 6.52 56.52 0.37 -5.23 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.12 0.43 7.77 -51.93 -0.40 0.03 16 32 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.25 7.51 -51.93 -0.39 -0.14 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.84 7.81 -51.93 -0.41 0.43 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.63 6.95 -51.93 -0.36 0.27 16 40 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 41 H 0.35 6.09 8.48 -39.29 -0.33 5.76 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.37 8.03 5.76 -40.82 -0.24 7.79 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -37.37 376.82 -6.84 -44.21 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.75 Total: 10.48 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -0.84 Total: 10.48 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.45 Total: -57.80 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.17 Total: -23.60 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.07 Total: -4.56 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.71 Total: 15.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.37 -6.84 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753601432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.557 kcal (2) G-P(sol) polarization free energy of solvation -37.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds