Wall clock time and date at job start Tue Mar 31 2020 18:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39903 * 109.46718 * 2 1 4 4 F 1.39903 * 109.46615 * 240.00340 * 2 1 3 5 5 C 1.53000 * 109.47096 * 120.00294 * 2 1 3 6 6 C 1.50705 * 109.46509 * 179.97438 * 5 2 1 7 7 O 1.21278 * 120.00313 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99524 * 180.02562 * 6 5 2 9 9 C 1.47422 * 125.65104 * 5.00311 * 8 6 5 10 10 C 1.54904 * 104.83325 * 155.91838 * 9 8 6 11 11 C 1.55166 * 101.57934 * 37.01281 * 10 9 8 12 12 C 1.47023 * 125.64657 * 185.06453 * 8 6 5 13 13 H 1.08996 * 109.88124 * 300.42760 * 12 8 6 14 14 C 1.53002 * 109.88211 * 61.59261 * 12 8 6 15 15 N 1.46901 * 109.46923 * 182.29775 * 14 12 8 16 16 C 1.46900 * 111.00034 * 185.06274 * 15 14 12 17 17 C 1.50704 * 109.47264 * 180.02562 * 16 15 14 18 18 O 1.21287 * 119.99548 * 359.97438 * 17 16 15 19 19 N 1.34772 * 119.99839 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99665 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00036 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99910 * 179.97438 * 20 19 17 23 23 N 1.31407 * 119.99874 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99829 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47334 * 89.99739 * 24 22 20 26 26 H 1.48501 * 109.47059 * 209.99439 * 24 22 20 27 27 H 1.48501 * 109.47427 * 329.99410 * 24 22 20 28 28 H 1.08998 * 109.46714 * 299.99512 * 1 2 3 29 29 H 1.08993 * 109.47507 * 59.99650 * 1 2 3 30 30 H 1.09004 * 109.46990 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47007 * 60.00155 * 5 2 1 32 32 H 1.09001 * 109.46996 * 299.99791 * 5 2 1 33 33 H 1.08998 * 110.36458 * 37.08196 * 9 8 6 34 34 H 1.09001 * 110.37028 * 274.76014 * 9 8 6 35 35 H 1.08996 * 111.01015 * 278.94296 * 10 9 8 36 36 H 1.09003 * 111.00559 * 155.08352 * 10 9 8 37 37 H 1.09002 * 110.71544 * 82.85831 * 11 10 9 38 38 H 1.08995 * 110.72191 * 205.95466 * 11 10 9 39 39 H 1.08998 * 109.47483 * 302.29974 * 14 12 8 40 40 H 1.08998 * 109.47478 * 62.29906 * 14 12 8 41 41 H 1.00903 * 110.99544 * 61.11217 * 15 14 12 42 42 H 1.09005 * 109.46926 * 299.99894 * 16 15 14 43 43 H 1.08997 * 109.47319 * 59.99769 * 16 15 14 44 44 H 0.96996 * 120.00195 * 359.97438 * 19 17 16 45 45 H 0.97008 * 120.00180 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0401 -0.7213 1.2492 6 6 3.5471 -0.7218 1.2488 7 8 4.1535 -0.1973 0.3387 8 7 4.2210 -1.3060 2.2592 9 6 3.6172 -2.0670 3.3681 10 6 4.7435 -3.0085 3.8626 11 6 5.9948 -2.1035 3.7112 12 6 5.6801 -1.2887 2.4390 13 1 6.1653 -1.7459 1.5766 14 6 6.1663 0.1519 2.6101 15 7 7.6301 0.1632 2.7338 16 6 8.1238 1.5169 3.0197 17 6 9.6258 1.4890 3.1389 18 8 10.2259 0.4442 2.9998 19 7 10.3022 2.6250 3.4009 20 6 11.6686 2.5995 3.5099 21 1 12.2030 1.6693 3.3852 22 6 12.3660 3.7707 3.7795 23 7 13.6756 3.7462 3.8844 24 14 11.4416 5.3797 3.9944 25 1 11.0831 5.5575 5.4244 26 1 12.3025 6.5075 3.5560 27 1 10.2044 5.3533 3.1734 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6768 -1.7489 1.2491 32 1 1.6767 -0.2075 2.1392 33 1 2.7669 -2.6479 3.0106 34 1 3.3082 -1.3929 4.1669 35 1 4.8212 -3.8916 3.2285 36 1 4.5885 -3.2898 4.9042 37 1 6.1015 -1.4457 4.5738 38 1 6.8925 -2.7063 3.5742 39 1 5.8705 0.7408 1.7420 40 1 5.7225 0.5809 3.5085 41 1 8.0658 -0.2132 1.9052 42 1 7.8363 2.1871 2.2095 43 1 7.6912 1.8714 3.9552 44 1 9.8222 3.4604 3.5125 45 1 14.1625 4.5638 4.0731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753601432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:02 Heat of formation + Delta-G solvation = -194.480484 kcal Electronic energy + Delta-G solvation = -28970.617031 eV Core-core repulsion = 24464.645034 eV Total energy + Delta-G solvation = -4505.971997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.86963 -47.89916 -41.29471 -40.32460 -38.69815 -36.68572 -35.87154 -34.31303 -33.78019 -32.59045 -31.44396 -29.35884 -28.35470 -26.30397 -24.89737 -23.73766 -22.83244 -21.80430 -21.36457 -20.49841 -19.96610 -18.62240 -18.43817 -17.96818 -17.68456 -17.16558 -17.11197 -16.72597 -16.67637 -16.10101 -15.78148 -15.46336 -15.24420 -15.00995 -14.85276 -14.75052 -14.36130 -14.26126 -14.20928 -14.02030 -13.82309 -13.67187 -13.42270 -13.30997 -13.23401 -13.12286 -13.06372 -12.91560 -12.63248 -12.44401 -12.14039 -12.00885 -11.89558 -11.85808 -11.58059 -11.54354 -11.01228 -10.50978 -10.28009 -9.75748 -9.45195 -8.43839 -6.04872 1.28675 1.33072 1.42224 1.49288 1.76332 1.90327 2.20560 2.68037 2.81175 3.11350 3.12732 3.26759 3.42940 3.48210 3.67033 3.71597 3.87243 4.01876 4.09234 4.22168 4.27990 4.34505 4.37259 4.38400 4.43237 4.47635 4.64681 4.66223 4.71893 4.83571 4.86115 5.04042 5.05516 5.06501 5.18422 5.32907 5.43348 5.49439 5.81054 5.94666 6.18764 6.45386 6.56084 6.84192 7.04302 7.35486 7.91085 8.73676 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.015688 B = 0.002385 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.390650 B =11735.014717 C =12931.381445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.282 3.718 3 F -0.219 7.219 4 F -0.219 7.219 5 C -0.174 4.174 6 C 0.513 3.487 7 O -0.579 6.579 8 N -0.612 5.612 9 C 0.093 3.907 10 C -0.128 4.128 11 C -0.111 4.111 12 C 0.140 3.860 13 H 0.050 0.950 14 C 0.061 3.939 15 N -0.670 5.670 16 C 0.063 3.937 17 C 0.451 3.549 18 O -0.611 6.611 19 N -0.590 5.590 20 C -0.330 4.330 21 H 0.057 0.943 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.965 3.035 25 H -0.253 1.253 26 H -0.274 1.274 27 H -0.236 1.236 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.018 0.982 40 H 0.087 0.913 41 H 0.341 0.659 42 H 0.064 0.936 43 H 0.119 0.881 44 H 0.389 0.611 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.893 -9.794 1.066 38.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.246 3.754 3 F -0.201 7.201 4 F -0.200 7.200 5 C -0.213 4.213 6 C 0.303 3.697 7 O -0.458 6.458 8 N -0.345 5.345 9 C -0.028 4.028 10 C -0.166 4.166 11 C -0.149 4.149 12 C 0.036 3.964 13 H 0.068 0.932 14 C -0.069 4.069 15 N -0.302 5.302 16 C -0.070 4.070 17 C 0.238 3.762 18 O -0.496 6.496 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.075 0.925 22 C -0.213 4.213 23 N -0.573 5.573 24 Si 0.785 3.215 25 H -0.178 1.178 26 H -0.199 1.199 27 H -0.160 1.160 28 H 0.133 0.867 29 H 0.097 0.903 30 H 0.134 0.866 31 H 0.177 0.823 32 H 0.176 0.824 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.036 0.964 40 H 0.105 0.895 41 H 0.159 0.841 42 H 0.082 0.918 43 H 0.137 0.863 44 H 0.225 0.775 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -36.018 -10.263 1.103 37.468 hybrid contribution 0.924 1.566 -1.266 2.215 sum -35.094 -8.698 -0.163 36.156 Atomic orbital electron populations 1.22820 0.87349 1.07455 1.06590 1.21507 0.95731 0.74913 0.83243 1.93000 1.91194 1.39003 1.96861 1.92996 1.91196 1.81145 1.54688 1.22968 0.90930 1.07372 1.00038 1.20775 0.90927 0.77505 0.80517 1.90798 1.71340 1.46932 1.36770 1.48643 1.06919 1.53447 1.25533 1.22744 0.97329 0.94223 0.88457 1.22851 0.92768 0.97277 1.03672 1.22500 0.99088 0.97925 0.95372 1.21385 0.80817 0.94991 0.99201 0.93201 1.22214 0.87181 0.97026 1.00523 1.60049 1.05132 1.20618 1.44369 1.21619 0.90224 0.91519 1.03639 1.20816 0.90532 0.83439 0.81382 1.90537 1.71386 1.32256 1.55374 1.42027 1.06332 1.09431 1.65385 1.19017 0.81813 0.96829 1.48207 0.92522 1.26111 0.96456 1.02644 0.96100 1.69799 1.08195 1.30594 1.48670 0.85366 0.79220 0.76694 0.80255 1.17769 1.19877 1.16001 0.86734 0.90318 0.86613 0.82261 0.82368 0.87261 0.88900 0.90537 0.87261 0.90082 0.90911 0.96389 0.89484 0.84135 0.91802 0.86322 0.77512 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 9.38 71.98 0.68 -0.33 16 2 C 0.28 4.48 1.85 30.60 0.06 4.54 16 3 F -0.22 -5.34 16.15 44.97 0.73 -4.61 16 4 F -0.22 -5.25 16.14 44.97 0.73 -4.52 16 5 C -0.17 -1.69 4.39 29.85 0.13 -1.56 16 6 C 0.51 10.92 7.35 87.66 0.64 11.56 16 7 O -0.58 -19.35 14.03 -3.02 -0.04 -19.40 16 8 N -0.61 -10.54 3.07 -788.07 -2.42 -12.96 16 9 C 0.09 0.65 6.65 86.85 0.58 1.23 16 10 C -0.13 -1.15 7.09 31.99 0.23 -0.93 16 11 C -0.11 -1.95 6.22 31.78 0.20 -1.75 16 12 C 0.14 3.18 3.09 45.34 0.14 3.32 16 13 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 14 C 0.06 1.61 5.04 86.30 0.44 2.04 16 15 N -0.67 -21.89 5.83 -517.92 -3.02 -24.91 16 16 C 0.06 2.12 6.16 85.56 0.53 2.65 16 17 C 0.45 21.40 7.82 87.66 0.69 22.08 16 18 O -0.61 -35.07 15.78 -3.05 -0.05 -35.12 16 19 N -0.59 -29.04 5.09 -306.98 -1.56 -30.60 16 20 C -0.33 -19.83 10.16 84.04 0.85 -18.98 16 21 H 0.06 4.04 7.39 -2.91 -0.02 4.01 16 22 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 23 N -0.93 -57.10 13.96 21.66 0.30 -56.79 16 24 Si 0.96 39.94 27.74 68.60 1.90 41.84 16 25 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.24 -8.46 6.52 99.48 0.65 -7.81 16 28 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.12 0.04 8.14 -2.38 -0.02 0.02 16 31 H 0.16 0.30 7.77 -2.39 -0.02 0.28 16 32 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.11 0.09 7.51 -2.39 -0.02 0.07 16 34 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 1.48 7.81 -2.39 -0.02 1.46 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.02 0.57 6.95 -2.39 -0.02 0.55 16 40 H 0.09 2.01 8.07 -2.39 -0.02 1.99 16 41 H 0.34 12.40 8.48 -89.69 -0.76 11.64 16 42 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 44 H 0.39 16.01 5.76 -92.71 -0.53 15.48 16 45 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -91.80 376.82 1.86 -89.95 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.33 Total: 33.57 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 5.62 Total: 23.54 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -6.70 Total: -125.26 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -0.09 Total: -54.51 kcal Atomic # 9 Polarization: -10.58 SS G_CDS: 1.45 Total: -9.13 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.90 Total: 41.84 kcal Total: -91.80 1.86 -89.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753601432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.534 kcal (2) G-P(sol) polarization free energy of solvation -91.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds