Wall clock time and date at job start Tue Mar 31 2020 18:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46860 * 2 1 4 4 O 1.42900 * 109.47202 * 239.99575 * 2 1 3 5 5 C 1.52996 * 109.46964 * 119.99445 * 2 1 3 6 6 C 1.52999 * 109.47299 * 182.90956 * 5 2 1 7 7 H 1.09005 * 109.46983 * 306.07992 * 6 5 2 8 8 C 1.53003 * 109.47672 * 186.07850 * 6 5 2 9 9 C 1.53005 * 109.47301 * 66.07412 * 6 5 2 10 10 N 1.46493 * 109.47277 * 185.00316 * 9 6 5 11 11 C 1.34779 * 120.00163 * 180.02562 * 10 9 6 12 12 O 1.21728 * 119.99777 * 359.97438 * 11 10 9 13 13 C 1.46251 * 120.00506 * 180.02562 * 11 10 9 14 14 C 1.35021 * 120.00415 * 179.97438 * 13 11 10 15 15 C 1.46952 * 120.00324 * 180.27101 * 14 13 11 16 16 C 1.40024 * 120.09926 * 359.44935 * 15 14 13 17 17 C 1.37603 * 119.89651 * 179.78883 * 16 15 14 18 18 C 1.39177 * 120.10199 * 0.48416 * 17 16 15 19 19 O 1.35569 * 119.89593 * 179.76353 * 18 17 16 20 20 C 1.34783 * 116.99645 * 174.38509 * 19 18 17 21 21 H 1.07999 * 120.00182 * 5.07182 * 20 19 18 22 22 C 1.38721 * 119.99925 * 185.07768 * 20 19 18 23 23 N 1.31509 * 120.00085 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99860 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46921 * 60.00243 * 24 22 20 26 26 H 1.48497 * 109.46577 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46942 * 299.99981 * 24 22 20 28 28 C 1.39177 * 120.20025 * 359.75150 * 18 17 16 29 29 C 1.37599 * 120.10257 * 0.02562 * 28 18 17 30 30 H 1.08997 * 109.47526 * 300.00296 * 1 2 3 31 31 H 1.08998 * 109.47437 * 60.00344 * 1 2 3 32 32 H 1.08999 * 109.47256 * 180.02562 * 1 2 3 33 33 H 0.96700 * 113.99445 * 60.00525 * 4 2 1 34 34 H 1.09001 * 109.47210 * 62.91412 * 5 2 1 35 35 H 1.09005 * 109.47517 * 302.90817 * 5 2 1 36 36 H 1.08997 * 109.46714 * 64.87365 * 8 6 5 37 37 H 1.08996 * 109.47278 * 184.87334 * 8 6 5 38 38 H 1.09000 * 109.46586 * 304.87456 * 8 6 5 39 39 H 1.09001 * 109.46628 * 65.00224 * 9 6 5 40 40 H 1.08995 * 109.47116 * 305.00598 * 9 6 5 41 41 H 0.96998 * 120.00407 * 0.02562 * 10 9 6 42 42 H 1.07999 * 119.99519 * 359.97438 * 13 11 10 43 43 H 1.07998 * 119.99539 * 359.97438 * 14 13 11 44 44 H 1.07997 * 120.05401 * 359.97438 * 16 15 14 45 45 H 1.08005 * 119.94533 * 180.23469 * 17 16 15 46 46 H 0.96992 * 119.99915 * 179.97438 * 23 22 20 47 47 H 1.08005 * 119.94655 * 180.02562 * 28 18 17 48 48 H 1.07997 * 120.04557 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7211 1.2493 6 6 3.5682 -0.6581 1.2865 7 1 3.9706 -1.0431 0.3495 8 6 4.0855 -1.5058 2.4504 9 6 4.0143 0.7933 1.4749 10 7 5.4748 0.8700 1.3911 11 6 6.0963 2.0580 1.5291 12 8 5.4439 3.0673 1.7230 13 6 7.5544 2.1347 1.4449 14 6 8.1769 3.3249 1.5827 15 6 9.6416 3.4029 1.4922 16 6 10.3945 2.2425 1.2746 17 6 11.7654 2.3210 1.1861 18 6 12.4045 3.5498 1.3227 19 8 13.7558 3.6216 1.2396 20 6 14.3057 4.8519 1.2635 21 1 13.6829 5.7187 1.4280 22 6 15.6718 5.0047 1.0767 23 7 16.4303 3.9492 0.8768 24 14 16.4339 6.7099 1.1091 25 1 16.1795 7.3408 2.4291 26 1 17.8981 6.6019 0.8866 27 1 15.8299 7.5424 0.0379 28 6 11.6606 4.7051 1.5440 29 6 10.2890 4.6369 1.6293 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7210 -0.2702 -1.9979 34 1 1.7199 -1.7628 1.2237 35 1 1.6346 -0.2382 2.1385 36 1 3.8425 -2.5534 2.2729 37 1 5.1666 -1.3922 2.5303 38 1 3.6160 -1.1758 3.3770 39 1 3.6871 1.1501 2.4515 40 1 3.5726 1.4134 0.6949 41 1 5.9947 0.0659 1.2363 42 1 8.1331 1.2394 1.2726 43 1 7.5981 4.2203 1.7547 44 1 9.8998 1.2879 1.1733 45 1 12.3467 1.4270 1.0145 46 1 17.3854 4.0561 0.7459 47 1 12.1608 5.6566 1.6489 48 1 9.7127 5.5339 1.8014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077054708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:32 Heat of formation + Delta-G solvation = -97.016869 kcal Electronic energy + Delta-G solvation = -26629.958478 eV Core-core repulsion = 22650.149599 eV Total energy + Delta-G solvation = -3979.808879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.74889 -39.15385 -38.47718 -36.91102 -36.17466 -33.43666 -33.16335 -32.27677 -31.34020 -30.42086 -28.47326 -27.34786 -26.41336 -25.55267 -23.04864 -22.15505 -21.96469 -20.76584 -20.54283 -19.21441 -18.15411 -17.81879 -17.11437 -16.99747 -16.13285 -15.64007 -15.16244 -14.93266 -14.82883 -14.71561 -14.36999 -14.29062 -13.85702 -13.81350 -13.41506 -13.18933 -13.10850 -13.00914 -12.91168 -12.59686 -12.57619 -12.41386 -11.98082 -11.91684 -11.75284 -11.71033 -11.41141 -11.10270 -11.08175 -11.01549 -10.76441 -10.69678 -10.53954 -10.33120 -9.75799 -9.58954 -9.49237 -9.06839 -8.83032 -8.37326 -7.10276 -6.64311 -4.19353 1.09384 2.14368 2.58042 3.04518 3.06268 3.08540 3.28096 3.61607 3.82965 3.83627 4.23887 4.43070 4.50685 4.52060 4.75571 4.82091 4.89904 4.93074 5.04645 5.06331 5.14576 5.26934 5.28903 5.32388 5.39576 5.47791 5.51127 5.55074 5.58993 5.66013 5.67710 5.68459 5.76174 5.89500 6.02067 6.03303 6.13179 6.39959 6.48587 6.52303 6.62651 6.80233 6.92652 7.13912 7.24657 7.25021 7.29186 7.59345 7.64876 7.80856 8.38303 8.80327 9.47327 10.52234 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.032033 B = 0.001530 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.901567 B =18293.456264 C =18574.152494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.094 3.906 3 H 0.060 0.940 4 O -0.566 6.566 5 C -0.104 4.104 6 C -0.103 4.103 7 H 0.087 0.913 8 C -0.150 4.150 9 C 0.124 3.876 10 N -0.732 5.732 11 C 0.554 3.446 12 O -0.562 6.562 13 C -0.282 4.282 14 C 0.037 3.963 15 C -0.198 4.198 16 C -0.043 4.043 17 C -0.199 4.199 18 C 0.166 3.834 19 O -0.162 6.162 20 C -0.394 4.394 21 H 0.097 0.903 22 C 0.042 3.958 23 N -0.852 5.852 24 Si 0.945 3.055 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.268 1.268 28 C -0.242 4.242 29 C -0.035 4.035 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.377 0.623 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.400 0.600 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.274 0.726 47 H 0.131 0.869 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.506 -8.529 -0.405 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.035 3.965 3 H 0.077 0.923 4 O -0.372 6.372 5 C -0.142 4.142 6 C -0.122 4.122 7 H 0.105 0.895 8 C -0.207 4.207 9 C 0.001 3.999 10 N -0.383 5.383 11 C 0.346 3.654 12 O -0.443 6.443 13 C -0.303 4.303 14 C 0.017 3.983 15 C -0.199 4.199 16 C -0.061 4.061 17 C -0.219 4.219 18 C 0.110 3.890 19 O -0.063 6.063 20 C -0.470 4.470 21 H 0.114 0.886 22 C -0.164 4.164 23 N -0.485 5.485 24 Si 0.768 3.232 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.193 1.193 28 C -0.261 4.261 29 C -0.054 4.054 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.224 0.776 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.234 0.766 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.084 0.916 47 H 0.149 0.851 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -25.231 -8.440 0.130 26.606 hybrid contribution 0.305 0.812 -0.463 0.983 sum -24.926 -7.628 -0.333 26.070 Atomic orbital electron populations 1.22520 0.96591 1.02755 1.02578 1.21910 0.92579 0.95735 0.86245 0.92261 1.86518 1.77102 1.57609 1.15948 1.21610 0.94779 1.01746 0.96054 1.21349 0.95765 0.94716 1.00323 0.89498 1.21871 1.01382 0.99595 0.97850 1.21395 0.80625 0.96187 1.01739 1.45862 1.07353 1.10098 1.75020 1.18417 0.88674 0.82644 0.75621 1.90767 1.67940 1.35097 1.50448 1.22445 0.92293 0.99593 1.16004 1.22275 0.92749 0.97126 0.86115 1.18465 0.91575 0.94070 1.15831 1.20885 0.92694 0.96936 0.95628 1.20152 0.93883 0.96188 1.11639 1.19614 0.84530 0.93486 0.91361 1.83903 1.14307 1.32014 1.76118 1.21429 0.91941 0.82449 1.51131 0.88598 1.25388 0.95168 0.99957 0.95892 1.70001 1.06274 1.29491 1.42715 0.85718 0.78257 0.79782 0.79397 1.19262 1.20083 1.19250 1.21099 0.93938 0.99210 1.11890 1.20987 0.93864 0.95998 0.94512 0.91505 0.92355 0.91842 0.77600 0.90678 0.90341 0.92382 0.92288 0.92493 0.91860 0.91767 0.76594 0.85927 0.85972 0.86411 0.86135 0.91557 0.85132 0.86823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.93 9.53 37.16 0.35 -0.58 16 2 C 0.09 0.60 3.44 -26.73 -0.09 0.50 16 3 H 0.06 0.41 6.38 -51.93 -0.33 0.07 16 4 O -0.57 -4.09 12.67 -35.23 -0.45 -4.54 16 5 C -0.10 -0.65 4.39 -26.73 -0.12 -0.77 16 6 C -0.10 -0.74 2.37 -90.62 -0.21 -0.96 16 7 H 0.09 0.71 7.60 -51.93 -0.39 0.32 16 8 C -0.15 -0.98 9.12 37.16 0.34 -0.64 16 9 C 0.12 1.18 4.95 -4.04 -0.02 1.16 16 10 N -0.73 -7.83 5.23 -61.76 -0.32 -8.15 16 11 C 0.55 7.96 7.74 -13.04 -0.10 7.86 16 12 O -0.56 -10.01 16.23 5.16 0.08 -9.92 16 13 C -0.28 -3.93 9.41 -37.51 -0.35 -4.29 16 14 C 0.04 0.57 9.45 -37.20 -0.35 0.22 16 15 C -0.20 -3.42 5.87 -105.03 -0.62 -4.03 16 16 C -0.04 -0.74 9.40 -39.14 -0.37 -1.11 16 17 C -0.20 -4.01 9.97 -39.46 -0.39 -4.40 16 18 C 0.17 3.84 6.66 -38.88 -0.26 3.59 16 19 O -0.16 -4.43 9.74 0.74 0.01 -4.42 16 20 C -0.39 -10.50 9.48 30.91 0.29 -10.20 16 21 H 0.10 2.34 5.18 -52.49 -0.27 2.07 16 22 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 23 N -0.85 -23.86 13.67 55.48 0.76 -23.10 16 24 Si 0.94 19.54 29.55 -169.99 -5.02 14.51 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 28 C -0.24 -5.04 9.14 -39.47 -0.36 -5.40 16 29 C -0.04 -0.63 9.78 -39.15 -0.38 -1.02 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.38 1.42 9.08 45.56 0.41 1.83 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.39 7.08 -51.93 -0.37 0.03 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.67 6.33 -51.93 -0.33 0.34 16 41 H 0.40 3.37 7.63 -40.82 -0.31 3.06 16 42 H 0.12 1.47 6.07 -52.49 -0.32 1.15 16 43 H 0.12 1.88 7.52 -52.49 -0.39 1.49 16 44 H 0.12 1.65 6.16 -52.49 -0.32 1.33 16 45 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.13 2.68 5.62 -52.48 -0.29 2.39 16 48 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -32.11 398.81 -7.96 -40.07 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.29 Total: 8.58 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -2.74 Total: -19.04 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.44 Total: -31.26 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.36 Total: -18.88 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.11 -7.96 -40.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077054708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.945 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds