Wall clock time and date at job start Tue Mar 31 2020 18:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46860 * 2 1 4 4 O 1.42900 * 109.47202 * 239.99575 * 2 1 3 5 5 C 1.52996 * 109.46964 * 119.99445 * 2 1 3 6 6 C 1.52999 * 109.47299 * 182.90956 * 5 2 1 7 7 H 1.09005 * 109.46983 * 306.07992 * 6 5 2 8 8 C 1.53003 * 109.47672 * 186.07850 * 6 5 2 9 9 C 1.53005 * 109.47301 * 66.07412 * 6 5 2 10 10 N 1.46493 * 109.47277 * 185.00316 * 9 6 5 11 11 C 1.34779 * 120.00163 * 180.02562 * 10 9 6 12 12 O 1.21728 * 119.99777 * 359.97438 * 11 10 9 13 13 C 1.46251 * 120.00506 * 180.02562 * 11 10 9 14 14 C 1.35021 * 120.00415 * 179.97438 * 13 11 10 15 15 C 1.46952 * 120.00324 * 180.27101 * 14 13 11 16 16 C 1.40024 * 120.09926 * 359.44935 * 15 14 13 17 17 C 1.37603 * 119.89651 * 179.78883 * 16 15 14 18 18 C 1.39177 * 120.10199 * 0.48416 * 17 16 15 19 19 O 1.35569 * 119.89593 * 179.76353 * 18 17 16 20 20 C 1.34783 * 116.99645 * 174.38509 * 19 18 17 21 21 H 1.07999 * 120.00182 * 5.07182 * 20 19 18 22 22 C 1.38721 * 119.99925 * 185.07768 * 20 19 18 23 23 N 1.31509 * 120.00085 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99860 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46921 * 60.00243 * 24 22 20 26 26 H 1.48497 * 109.46577 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46942 * 299.99981 * 24 22 20 28 28 C 1.39177 * 120.20025 * 359.75150 * 18 17 16 29 29 C 1.37599 * 120.10257 * 0.02562 * 28 18 17 30 30 H 1.08997 * 109.47526 * 300.00296 * 1 2 3 31 31 H 1.08998 * 109.47437 * 60.00344 * 1 2 3 32 32 H 1.08999 * 109.47256 * 180.02562 * 1 2 3 33 33 H 0.96700 * 113.99445 * 60.00525 * 4 2 1 34 34 H 1.09001 * 109.47210 * 62.91412 * 5 2 1 35 35 H 1.09005 * 109.47517 * 302.90817 * 5 2 1 36 36 H 1.08997 * 109.46714 * 64.87365 * 8 6 5 37 37 H 1.08996 * 109.47278 * 184.87334 * 8 6 5 38 38 H 1.09000 * 109.46586 * 304.87456 * 8 6 5 39 39 H 1.09001 * 109.46628 * 65.00224 * 9 6 5 40 40 H 1.08995 * 109.47116 * 305.00598 * 9 6 5 41 41 H 0.96998 * 120.00407 * 0.02562 * 10 9 6 42 42 H 1.07999 * 119.99519 * 359.97438 * 13 11 10 43 43 H 1.07998 * 119.99539 * 359.97438 * 14 13 11 44 44 H 1.07997 * 120.05401 * 359.97438 * 16 15 14 45 45 H 1.08005 * 119.94533 * 180.23469 * 17 16 15 46 46 H 0.96992 * 119.99915 * 179.97438 * 23 22 20 47 47 H 1.08005 * 119.94655 * 180.02562 * 28 18 17 48 48 H 1.07997 * 120.04557 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7211 1.2493 6 6 3.5682 -0.6581 1.2865 7 1 3.9706 -1.0431 0.3495 8 6 4.0855 -1.5058 2.4504 9 6 4.0143 0.7933 1.4749 10 7 5.4748 0.8700 1.3911 11 6 6.0963 2.0580 1.5291 12 8 5.4439 3.0673 1.7230 13 6 7.5544 2.1347 1.4449 14 6 8.1769 3.3249 1.5827 15 6 9.6416 3.4029 1.4922 16 6 10.3945 2.2425 1.2746 17 6 11.7654 2.3210 1.1861 18 6 12.4045 3.5498 1.3227 19 8 13.7558 3.6216 1.2396 20 6 14.3057 4.8519 1.2635 21 1 13.6829 5.7187 1.4280 22 6 15.6718 5.0047 1.0767 23 7 16.4303 3.9492 0.8768 24 14 16.4339 6.7099 1.1091 25 1 16.1795 7.3408 2.4291 26 1 17.8981 6.6019 0.8866 27 1 15.8299 7.5424 0.0379 28 6 11.6606 4.7051 1.5440 29 6 10.2890 4.6369 1.6293 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7210 -0.2702 -1.9979 34 1 1.7199 -1.7628 1.2237 35 1 1.6346 -0.2382 2.1385 36 1 3.8425 -2.5534 2.2729 37 1 5.1666 -1.3922 2.5303 38 1 3.6160 -1.1758 3.3770 39 1 3.6871 1.1501 2.4515 40 1 3.5726 1.4134 0.6949 41 1 5.9947 0.0659 1.2363 42 1 8.1331 1.2394 1.2726 43 1 7.5981 4.2203 1.7547 44 1 9.8998 1.2879 1.1733 45 1 12.3467 1.4270 1.0145 46 1 17.3854 4.0561 0.7459 47 1 12.1608 5.6566 1.6489 48 1 9.7127 5.5339 1.8014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077054708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:31 Heat of formation + Delta-G solvation = -118.795363 kcal Electronic energy + Delta-G solvation = -26630.902864 eV Core-core repulsion = 22650.149599 eV Total energy + Delta-G solvation = -3980.753266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.94425 -40.65593 -39.14526 -38.48046 -36.93459 -34.73000 -34.30370 -33.93692 -31.96994 -31.86206 -29.86615 -27.90107 -27.62223 -27.03356 -24.37706 -23.65476 -22.52107 -22.02682 -21.33526 -20.49832 -19.69049 -18.84974 -18.36029 -18.20025 -17.07573 -16.49104 -16.46513 -16.32458 -15.99999 -15.66170 -15.61863 -15.47734 -15.31688 -15.00734 -14.64914 -14.53050 -14.10821 -13.81886 -13.68854 -13.58797 -13.49865 -13.30131 -13.14945 -13.10340 -12.88137 -12.67665 -12.57383 -12.47463 -12.22975 -12.14207 -12.00289 -11.62903 -11.28133 -11.21410 -11.10411 -10.98437 -10.81906 -10.57443 -10.01741 -9.88948 -8.67558 -8.51585 -6.17943 -0.24081 0.58801 1.14375 1.36106 1.47665 1.51880 2.15899 2.31267 2.38183 2.86952 3.18192 3.40939 3.42870 3.71310 3.80654 3.86648 3.95345 3.99778 4.09039 4.24469 4.27552 4.31197 4.36360 4.37790 4.48357 4.65565 4.66641 4.72634 4.78349 4.85532 4.93711 4.94963 5.01265 5.03372 5.06133 5.18952 5.20296 5.28248 5.30573 5.33905 5.36029 5.42353 5.54442 5.60123 5.64215 5.81845 5.97537 6.10813 6.61377 6.89686 6.92566 7.29456 7.69506 8.70154 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.032033 B = 0.001530 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.901567 B =18293.456264 C =18574.152494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.092 3.908 3 H 0.052 0.948 4 O -0.583 6.583 5 C -0.105 4.105 6 C -0.091 4.091 7 H 0.080 0.920 8 C -0.149 4.149 9 C 0.124 3.876 10 N -0.714 5.714 11 C 0.548 3.452 12 O -0.597 6.597 13 C -0.246 4.246 14 C 0.015 3.985 15 C -0.171 4.171 16 C -0.038 4.038 17 C -0.207 4.207 18 C 0.129 3.871 19 O -0.220 6.220 20 C -0.419 4.419 21 H 0.105 0.895 22 C -0.017 4.017 23 N -0.913 5.913 24 Si 1.018 2.982 25 H -0.257 1.257 26 H -0.271 1.271 27 H -0.257 1.257 28 C -0.249 4.249 29 C -0.040 4.040 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.390 0.610 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.414 0.586 42 H 0.151 0.849 43 H 0.124 0.876 44 H 0.160 0.840 45 H 0.123 0.877 46 H 0.275 0.725 47 H 0.125 0.875 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.998 -9.187 -0.211 30.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.033 3.967 3 H 0.070 0.930 4 O -0.391 6.391 5 C -0.143 4.143 6 C -0.110 4.110 7 H 0.098 0.902 8 C -0.206 4.206 9 C 0.001 3.999 10 N -0.365 5.365 11 C 0.339 3.661 12 O -0.480 6.480 13 C -0.267 4.267 14 C -0.005 4.005 15 C -0.171 4.171 16 C -0.056 4.056 17 C -0.226 4.226 18 C 0.077 3.923 19 O -0.125 6.125 20 C -0.494 4.494 21 H 0.123 0.877 22 C -0.216 4.216 23 N -0.550 5.550 24 Si 0.837 3.163 25 H -0.181 1.181 26 H -0.196 1.196 27 H -0.182 1.182 28 C -0.268 4.268 29 C -0.058 4.058 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.239 0.761 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.251 0.749 42 H 0.169 0.831 43 H 0.142 0.858 44 H 0.177 0.823 45 H 0.141 0.859 46 H 0.084 0.916 47 H 0.143 0.857 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -28.809 -9.140 0.319 30.226 hybrid contribution 0.730 0.779 -0.517 1.186 sum -28.080 -8.361 -0.198 29.299 Atomic orbital electron populations 1.22478 0.95567 1.02828 1.03202 1.21934 0.93416 0.95201 0.86104 0.92993 1.86477 1.77536 1.58214 1.16898 1.21646 0.94031 1.02068 0.96520 1.21245 0.96435 0.93055 1.00293 0.90184 1.21873 1.01325 0.99929 0.97493 1.21482 0.79595 0.97666 1.01193 1.45795 1.08160 1.09614 1.72928 1.18547 0.88830 0.83067 0.75624 1.90770 1.68626 1.36567 1.52078 1.22776 0.92396 0.99999 1.11497 1.22163 0.91417 0.98162 0.88731 1.18781 0.92682 0.93666 1.12010 1.21288 0.91374 0.98807 0.94104 1.20422 0.95303 0.95373 1.11480 1.20193 0.83970 0.95463 0.92671 1.83884 1.16247 1.32348 1.79991 1.21866 0.92706 0.82993 1.51878 0.87726 1.26601 0.95372 1.04292 0.95340 1.70140 1.06496 1.32045 1.46293 0.84654 0.77247 0.74457 0.79949 1.18114 1.19578 1.18163 1.21202 0.95180 0.98419 1.11992 1.21316 0.92784 0.97835 0.93912 0.90964 0.91721 0.91990 0.76110 0.90396 0.89397 0.91571 0.92280 0.92312 0.92296 0.92588 0.74918 0.83124 0.85774 0.82277 0.85918 0.91600 0.85724 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 9.53 71.98 0.69 -0.79 16 2 C 0.09 1.00 3.44 30.59 0.11 1.10 16 3 H 0.05 0.63 6.38 -2.38 -0.02 0.62 16 4 O -0.58 -7.37 12.67 -148.98 -1.89 -9.26 16 5 C -0.10 -1.07 4.39 30.59 0.13 -0.94 16 6 C -0.09 -1.08 2.37 -10.79 -0.03 -1.11 16 7 H 0.08 1.10 7.60 -2.38 -0.02 1.08 16 8 C -0.15 -1.50 9.12 71.98 0.66 -0.84 16 9 C 0.12 2.05 4.95 86.38 0.43 2.47 16 10 N -0.71 -12.78 5.23 -467.50 -2.45 -15.23 16 11 C 0.55 13.79 7.74 86.32 0.67 14.46 16 12 O -0.60 -19.76 16.23 -4.44 -0.07 -19.83 16 13 C -0.25 -5.72 9.41 23.61 0.22 -5.50 16 14 C 0.02 0.41 9.45 23.81 0.23 0.64 16 15 C -0.17 -5.35 5.87 -20.13 -0.12 -5.47 16 16 C -0.04 -1.19 9.40 22.55 0.21 -0.98 16 17 C -0.21 -8.26 9.97 22.35 0.22 -8.04 16 18 C 0.13 6.18 6.66 22.72 0.15 6.33 16 19 O -0.22 -12.76 9.74 -20.28 -0.20 -12.96 16 20 C -0.42 -23.62 9.48 67.94 0.64 -22.97 16 21 H 0.11 5.38 5.18 -2.91 -0.02 5.37 16 22 C -0.02 -0.94 5.49 84.86 0.47 -0.48 16 23 N -0.91 -54.36 13.67 21.62 0.30 -54.07 16 24 Si 1.02 41.49 29.55 68.60 2.03 43.52 16 25 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 26 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 27 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 28 C -0.25 -10.47 9.14 22.34 0.20 -10.27 16 29 C -0.04 -1.38 9.78 22.55 0.22 -1.16 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.39 2.31 9.08 -74.06 -0.67 1.64 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 0.59 7.08 -2.39 -0.02 0.57 16 38 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.06 6.33 -2.39 -0.02 1.04 16 41 H 0.41 5.21 7.63 -92.71 -0.71 4.50 16 42 H 0.15 2.66 6.07 -2.91 -0.02 2.64 16 43 H 0.12 3.42 7.52 -2.91 -0.02 3.40 16 44 H 0.16 3.62 6.16 -2.91 -0.02 3.61 16 45 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 46 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 47 H 0.13 5.29 5.62 -2.91 -0.02 5.28 16 48 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -74.32 398.81 2.44 -71.88 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -0.39 Total: 29.49 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 5.10 Total: -33.54 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -2.15 Total: -69.30 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -2.16 Total: -42.05 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -74.32 2.44 -71.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077054708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.915 kcal (2) G-P(sol) polarization free energy of solvation -74.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds