Wall clock time and date at job start Tue Mar 31 2020 18:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46971 * 2 1 4 4 N 1.46496 * 109.46991 * 120.00599 * 2 1 3 5 5 C 1.46498 * 120.00538 * 59.99752 * 4 2 1 6 6 C 1.34784 * 119.99529 * 239.99899 * 4 2 1 7 7 O 1.21715 * 120.00130 * 359.97438 * 6 4 2 8 8 C 1.46257 * 119.99982 * 180.02562 * 6 4 2 9 9 C 1.35017 * 120.00203 * 180.02562 * 8 6 4 10 10 C 1.46965 * 120.00206 * 180.02562 * 9 8 6 11 11 C 1.40029 * 120.09650 * 359.71817 * 10 9 8 12 12 C 1.37594 * 119.89199 * 179.69711 * 11 10 9 13 13 C 1.39177 * 120.10298 * 0.60225 * 12 11 10 14 14 O 1.35570 * 119.90009 * 179.69114 * 13 12 11 15 15 C 1.34782 * 117.00004 * 174.42663 * 14 13 12 16 16 H 1.08004 * 120.00159 * 5.05584 * 15 14 13 17 17 C 1.38721 * 119.99977 * 185.06196 * 15 14 13 18 18 N 1.31506 * 120.00220 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99836 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47159 * 90.00572 * 19 17 15 21 21 H 1.48506 * 109.47005 * 209.99948 * 19 17 15 22 22 H 1.48493 * 109.47350 * 330.00116 * 19 17 15 23 23 C 1.39177 * 120.20057 * 359.67795 * 13 12 11 24 24 C 1.37595 * 120.10477 * 0.02562 * 23 13 12 25 25 C 1.53003 * 109.46863 * 240.00041 * 2 1 3 26 26 C 1.52996 * 109.46905 * 184.99986 * 25 2 1 27 27 C 1.53001 * 109.46960 * 65.00109 * 25 2 1 28 28 O 1.42901 * 109.47116 * 305.00048 * 25 2 1 29 29 H 1.08995 * 109.47237 * 59.99720 * 1 2 3 30 30 H 1.08998 * 109.47464 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46797 * 299.99977 * 1 2 3 32 32 H 1.09000 * 109.46967 * 89.99926 * 5 4 2 33 33 H 1.09006 * 109.47027 * 210.00114 * 5 4 2 34 34 H 1.09004 * 109.46690 * 329.99822 * 5 4 2 35 35 H 1.08000 * 119.99779 * 359.97438 * 8 6 4 36 36 H 1.08002 * 119.99579 * 359.97438 * 9 8 6 37 37 H 1.07994 * 120.05212 * 0.02562 * 11 10 9 38 38 H 1.07993 * 119.95058 * 180.27804 * 12 11 10 39 39 H 0.96992 * 120.00306 * 180.02562 * 18 17 15 40 40 H 1.08004 * 119.94777 * 179.97438 * 23 13 12 41 41 H 1.07995 * 120.05353 * 180.02562 * 24 23 13 42 42 H 1.09003 * 109.46841 * 179.97438 * 26 25 2 43 43 H 1.09002 * 109.47389 * 300.00228 * 26 25 2 44 44 H 1.08998 * 109.47455 * 60.00358 * 26 25 2 45 45 H 1.08997 * 109.47580 * 299.99928 * 27 25 2 46 46 H 1.09002 * 109.46983 * 59.99987 * 27 25 2 47 47 H 1.09003 * 109.46973 * 180.02562 * 27 25 2 48 48 H 0.96702 * 113.99731 * 60.00261 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6644 -2.0933 1.4279 6 6 2.7932 -0.0357 2.0833 7 8 3.0877 1.1295 1.8905 8 6 3.2812 -0.7254 3.2772 9 6 4.0571 -0.0691 4.1662 10 6 4.5479 -0.7623 5.3656 11 6 4.2073 -2.1016 5.5913 12 6 4.6743 -2.7483 6.7124 13 6 5.4736 -2.0697 7.6277 14 8 5.9263 -2.7091 8.7341 15 6 6.7882 -2.0348 9.5209 16 1 7.0247 -1.0037 9.3032 17 6 7.3717 -2.6652 10.6102 18 7 8.2123 -2.0072 11.3781 19 14 6.9622 -4.4484 10.9869 20 1 7.9174 -5.3363 10.2768 21 1 7.0642 -4.6812 12.4501 22 1 5.5797 -4.7453 10.5336 23 6 5.8098 -0.7368 7.4104 24 6 5.3525 -0.0836 6.2890 25 6 2.0400 -0.7213 -1.2493 26 6 3.5648 -0.8311 -1.1880 27 6 1.6352 0.0690 -2.4953 28 8 1.4702 -2.0304 -1.3095 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.4157 -2.7378 0.9715 33 1 1.6238 -2.2853 2.5001 34 1 0.6904 -2.3002 0.9845 35 1 3.0203 -1.7594 3.4480 36 1 4.3176 0.9650 3.9955 37 1 3.5835 -2.6277 4.8839 38 1 4.4160 -3.7826 6.8852 39 1 8.6205 -2.4480 12.1396 40 1 6.4300 -0.2140 8.1235 41 1 5.6142 0.9506 6.1210 42 1 3.9280 -1.3453 -2.0778 43 1 3.9995 0.1675 -1.1421 44 1 3.8532 -1.3940 -0.3004 45 1 0.5489 0.1473 -2.5390 46 1 2.0699 1.0675 -2.4494 47 1 1.9981 -0.4451 -3.3854 48 1 0.5040 -2.0372 -1.3504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297361663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:46 Heat of formation + Delta-G solvation = -68.916767 kcal Electronic energy + Delta-G solvation = -28004.917863 eV Core-core repulsion = 24026.327496 eV Total energy + Delta-G solvation = -3978.590367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.53042 -39.36019 -38.48469 -37.03318 -35.24862 -33.42230 -32.79278 -32.40730 -30.74554 -30.51609 -28.47420 -27.55516 -26.90222 -25.68565 -24.29486 -22.71564 -22.23740 -20.74410 -19.91498 -18.75115 -17.95508 -17.55194 -17.27507 -17.24382 -15.89677 -15.83021 -15.27312 -15.00130 -14.81704 -14.39286 -14.17266 -14.03419 -13.93678 -13.70904 -13.28428 -13.01564 -12.85563 -12.83270 -12.74340 -12.63404 -12.44422 -12.40477 -12.34500 -12.25577 -11.88647 -11.87473 -11.68586 -11.62482 -11.18670 -11.02779 -11.01017 -10.75264 -10.41693 -10.27384 -9.70985 -9.64426 -9.54466 -8.93414 -8.66541 -8.46716 -7.23568 -6.60052 -4.23863 0.99196 2.03696 2.47094 2.91532 3.11964 3.15926 3.29137 3.50624 3.86950 4.09054 4.27571 4.42153 4.45066 4.61967 4.63433 4.76167 4.87980 4.91393 4.94225 5.02431 5.15021 5.21819 5.28300 5.38037 5.40971 5.43723 5.48539 5.51559 5.57735 5.60231 5.62039 5.72268 5.78380 5.85737 5.94368 6.00925 6.03786 6.29040 6.30892 6.51694 6.56419 6.68026 6.93184 7.09258 7.16369 7.27151 7.39283 7.42062 7.63071 7.84461 8.26919 8.73262 9.33573 10.46221 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029293 B = 0.001930 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.620899 B =14502.710143 C =14912.496335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 H 0.107 0.893 4 N -0.606 5.606 5 C 0.087 3.913 6 C 0.556 3.444 7 O -0.559 6.559 8 C -0.278 4.278 9 C 0.035 3.965 10 C -0.189 4.189 11 C -0.045 4.045 12 C -0.199 4.199 13 C 0.173 3.827 14 O -0.203 6.203 15 C -0.392 4.392 16 H 0.111 0.889 17 C 0.066 3.934 18 N -0.867 5.867 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.258 1.258 23 C -0.230 4.230 24 C -0.037 4.037 25 C 0.120 3.880 26 C -0.135 4.135 27 C -0.178 4.178 28 O -0.555 6.555 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.283 0.717 40 H 0.137 0.863 41 H 0.117 0.883 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.747 0.792 -23.259 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 H 0.125 0.875 4 N -0.339 5.339 5 C -0.056 4.056 6 C 0.350 3.650 7 O -0.440 6.440 8 C -0.299 4.299 9 C 0.015 3.985 10 C -0.189 4.189 11 C -0.063 4.063 12 C -0.218 4.218 13 C 0.119 3.881 14 O -0.105 6.105 15 C -0.467 4.467 16 H 0.128 0.872 17 C -0.140 4.140 18 N -0.503 5.503 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.182 1.182 23 C -0.249 4.249 24 C -0.055 4.055 25 C 0.079 3.921 26 C -0.193 4.193 27 C -0.236 4.236 28 O -0.361 6.361 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -13.844 0.976 -22.996 26.860 hybrid contribution -0.636 -0.516 0.314 0.877 sum -14.480 0.460 -22.683 26.914 Atomic orbital electron populations 1.22224 0.95133 1.02342 1.03088 1.21662 0.94122 0.98605 0.84858 0.87490 1.47575 1.51480 1.12608 1.22217 1.21768 1.01110 0.81252 1.01452 1.18442 0.77358 0.86020 0.83162 1.90752 1.58943 1.17076 1.77258 1.22574 1.08642 1.01457 0.97222 1.22317 0.88258 0.98254 0.89697 1.18528 1.07772 0.94991 0.97660 1.20871 0.96677 0.93255 0.95530 1.20143 1.05343 1.00454 0.95893 1.19360 0.91906 0.90978 0.85876 1.83504 1.54574 1.42577 1.29882 1.20876 1.20291 0.98189 1.07299 0.87201 1.24541 0.94584 1.00188 0.94643 1.69612 1.26740 1.37841 1.16081 0.86156 0.80383 0.82658 0.77620 1.19635 1.20530 1.18209 1.21221 1.07583 0.95275 1.00786 1.21039 0.93663 0.98449 0.92399 1.21564 0.94799 0.82906 0.92875 1.21692 0.92087 1.02638 1.02854 1.22507 1.01905 1.01102 0.98069 1.86611 1.24838 1.27858 1.96800 0.91159 0.92031 0.91568 0.92194 0.91240 0.91396 0.85598 0.85858 0.86326 0.86119 0.90663 0.84509 0.86544 0.92064 0.91186 0.91598 0.91990 0.91308 0.91491 0.78171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 8.50 37.16 0.32 -0.77 16 2 C 0.11 1.00 2.14 -67.93 -0.15 0.85 16 3 H 0.11 1.18 6.90 -51.93 -0.36 0.82 16 4 N -0.61 -6.39 1.79 -175.63 -0.31 -6.70 16 5 C 0.09 0.72 8.37 59.85 0.50 1.22 16 6 C 0.56 7.71 7.60 -13.04 -0.10 7.61 16 7 O -0.56 -9.46 15.56 5.18 0.08 -9.38 16 8 C -0.28 -3.74 8.61 -37.51 -0.32 -4.06 16 9 C 0.03 0.51 9.45 -37.19 -0.35 0.16 16 10 C -0.19 -3.10 5.87 -105.02 -0.62 -3.72 16 11 C -0.05 -0.73 9.40 -39.15 -0.37 -1.09 16 12 C -0.20 -3.69 9.97 -39.47 -0.39 -4.09 16 13 C 0.17 3.79 6.66 -38.88 -0.26 3.53 16 14 O -0.20 -5.06 8.57 0.74 0.01 -5.06 16 15 C -0.39 -10.50 9.94 30.91 0.31 -10.20 16 16 H 0.11 3.00 5.41 -52.48 -0.28 2.72 16 17 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 18 N -0.87 -23.96 13.96 55.48 0.77 -23.18 16 19 Si 0.91 20.63 28.62 -169.99 -4.86 15.76 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 23 C -0.23 -4.70 9.14 -39.47 -0.36 -5.06 16 24 C -0.04 -0.65 9.78 -39.15 -0.38 -1.03 16 25 C 0.12 0.94 0.84 -90.62 -0.08 0.86 16 26 C -0.14 -1.28 8.63 37.16 0.32 -0.96 16 27 C -0.18 -1.07 8.57 37.16 0.32 -0.75 16 28 O -0.55 -4.12 10.62 -35.23 -0.37 -4.49 16 29 H 0.07 0.34 6.56 -51.93 -0.34 0.00 16 30 H 0.06 0.30 5.24 -51.93 -0.27 0.03 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.53 7.76 -51.93 -0.40 0.12 16 33 H 0.07 0.55 6.09 -51.93 -0.32 0.24 16 34 H 0.07 0.44 5.84 -51.93 -0.30 0.13 16 35 H 0.13 1.46 4.21 -52.49 -0.22 1.24 16 36 H 0.12 1.84 7.52 -52.49 -0.39 1.44 16 37 H 0.12 1.53 6.16 -52.49 -0.32 1.21 16 38 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 39 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.14 2.92 5.62 -52.48 -0.29 2.63 16 41 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.73 7.20 -51.93 -0.37 0.36 16 45 H 0.06 0.28 6.57 -51.93 -0.34 -0.06 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.37 1.61 7.16 45.56 0.33 1.94 16 LS Contribution 382.78 15.07 5.77 5.77 Total: -1.00 -30.30 382.78 -6.63 -36.93 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.99 Total: 6.18 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -1.71 Total: -15.83 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.46 Total: -29.88 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.29 Total: -18.93 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.86 Total: 15.76 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.30 -6.63 -36.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297361663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.988 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds