Wall clock time and date at job start Tue Mar 31 2020 18:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 114.00195 * 2 1 4 4 H 1.08999 * 109.47136 * 11.76185 * 3 2 1 5 5 C 1.53005 * 109.47032 * 131.75783 * 3 2 1 6 6 H 1.09002 * 109.46892 * 185.00213 * 5 3 2 7 7 C 1.52997 * 109.47310 * 305.00142 * 5 3 2 8 8 N 1.46502 * 109.46604 * 65.00434 * 5 3 2 9 9 C 1.34779 * 119.99652 * 155.00256 * 8 5 3 10 10 O 1.21286 * 119.99887 * 359.97438 * 9 8 5 11 11 C 1.50694 * 119.99824 * 179.97438 * 9 8 5 12 12 C 1.50700 * 109.46938 * 179.97438 * 11 9 8 13 13 C 1.38301 * 119.93413 * 269.72405 * 12 11 9 14 14 C 1.38099 * 120.07407 * 179.72473 * 13 12 11 15 15 C 1.38882 * 119.92567 * 0.57377 * 14 13 12 16 16 O 1.35749 * 120.06833 * 179.68221 * 15 14 13 17 17 C 1.34830 * 116.99940 * 185.70195 * 16 15 14 18 18 H 1.08002 * 120.00076 * 5.17586 * 17 16 15 19 19 C 1.38651 * 119.99993 * 185.17564 * 17 16 15 20 20 N 1.31558 * 120.00060 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00065 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47140 * 89.99849 * 21 19 17 23 23 H 1.48509 * 109.46875 * 210.00057 * 21 19 17 24 24 H 1.48503 * 109.46644 * 329.99411 * 21 19 17 25 25 C 1.38878 * 119.86328 * 359.70547 * 15 14 13 26 26 C 1.38097 * 119.93110 * 0.02562 * 25 15 14 27 27 C 1.53001 * 109.47437 * 251.75976 * 3 2 1 28 28 C 1.53004 * 117.49821 * 130.60883 * 27 3 2 29 29 C 1.52998 * 59.99928 * 252.51279 * 28 27 3 30 30 H 1.08999 * 109.47391 * 172.03040 * 1 2 3 31 31 H 1.08999 * 109.46647 * 292.02850 * 1 2 3 32 32 H 1.09000 * 109.47096 * 52.02599 * 1 2 3 33 33 H 1.09003 * 109.47176 * 300.00177 * 7 5 3 34 34 H 1.09006 * 109.46847 * 59.99476 * 7 5 3 35 35 H 1.08993 * 109.47132 * 179.97438 * 7 5 3 36 36 H 0.96994 * 120.00045 * 334.99208 * 8 5 3 37 37 H 1.08997 * 109.47259 * 299.99912 * 11 9 8 38 38 H 1.09003 * 109.47219 * 60.00286 * 11 9 8 39 39 H 1.08001 * 119.96401 * 359.97438 * 13 12 11 40 40 H 1.07994 * 120.04048 * 180.27920 * 14 13 12 41 41 H 0.97001 * 119.99898 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.03637 * 179.97438 * 25 15 14 43 43 H 1.08001 * 119.96612 * 180.02562 * 26 25 15 44 44 H 1.08998 * 115.54805 * 276.31596 * 27 3 2 45 45 H 1.08998 * 117.49960 * 0.02562 * 28 27 3 46 46 H 1.09005 * 117.49124 * 145.02092 * 28 27 3 47 47 H 1.09000 * 117.50018 * 252.51304 * 29 28 27 48 48 H 1.08993 * 117.49938 * 107.49319 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2390 2.0465 0.2095 5 6 3.0954 1.3805 1.0761 6 1 3.4770 2.3997 1.1367 7 6 2.5024 0.9767 2.4274 8 7 4.1893 0.4692 0.7308 9 6 5.4318 0.6999 1.1993 10 8 5.6443 1.6622 1.9064 11 6 6.5569 -0.2378 0.8447 12 6 7.8321 0.2412 1.4893 13 6 8.6621 1.1152 0.8112 14 6 9.8285 1.5605 1.4014 15 6 10.1736 1.1203 2.6726 16 8 11.3227 1.5511 3.2530 17 6 11.6570 0.9957 4.4352 18 1 11.0666 0.1857 4.8375 19 6 12.7586 1.4644 5.1345 20 7 13.0845 0.9228 6.2883 21 14 13.7794 2.8658 4.4391 22 1 13.2347 4.1609 4.9198 23 1 15.1875 2.7233 4.8891 24 1 13.7276 2.8270 2.9555 25 6 9.3409 0.2381 3.3487 26 6 8.1731 -0.1991 2.7553 27 6 2.6302 1.5877 -1.3700 28 6 2.2771 2.9144 -2.0454 29 6 1.6932 1.6049 -2.5794 30 1 -0.3634 -1.0177 -0.1425 31 1 -0.3632 0.3855 0.9527 32 1 -0.3633 0.6323 -0.8101 33 1 1.6885 1.6547 2.6842 34 1 2.1207 -0.0425 2.3667 35 1 3.2755 1.0298 3.1939 36 1 4.0193 -0.3002 0.1652 37 1 6.3218 -1.2397 1.2040 38 1 6.6836 -0.2604 -0.2377 39 1 8.3958 1.4531 -0.1794 40 1 10.4740 2.2465 0.8732 41 1 13.8550 1.2510 6.7777 42 1 9.6067 -0.1063 4.3372 43 1 7.5249 -0.8848 3.2807 44 1 3.6376 1.1990 -1.5192 45 1 1.6035 3.5863 -1.5135 46 1 3.0524 3.3989 -2.6390 47 1 2.0843 1.2279 -3.5244 48 1 0.6352 1.4151 -2.3990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837009708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:53 Heat of formation + Delta-G solvation = -60.660571 kcal Electronic energy + Delta-G solvation = -28086.896172 eV Core-core repulsion = 24108.663820 eV Total energy + Delta-G solvation = -3978.232352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.27729 -39.30056 -38.67068 -36.64511 -36.52739 -35.08003 -32.49076 -31.91151 -30.58243 -30.14866 -28.17866 -26.79041 -26.15512 -24.85906 -22.82846 -22.24688 -21.98833 -21.26758 -20.45248 -20.02566 -17.83121 -17.46156 -17.23524 -16.97542 -16.45468 -15.82026 -15.33651 -15.17314 -15.01654 -14.64479 -14.39699 -13.98433 -13.85815 -13.75121 -13.62402 -13.39347 -13.29588 -12.88182 -12.59514 -12.36114 -12.29869 -12.14954 -11.95956 -11.92531 -11.86943 -11.59449 -11.35836 -11.23482 -10.86442 -10.77357 -10.68989 -10.61175 -10.56166 -10.09311 -9.93451 -9.63252 -9.34155 -9.05025 -8.80305 -8.15742 -7.23198 -6.36240 -4.02221 2.23362 2.23757 2.83293 2.98852 3.25659 3.29578 3.33447 3.44904 3.61133 4.14131 4.28859 4.33834 4.53643 4.57893 4.60849 4.77634 4.83191 4.93355 4.94191 5.00520 5.05452 5.15152 5.18246 5.21428 5.27000 5.29487 5.33752 5.38447 5.49748 5.55663 5.68377 5.68649 5.74660 5.77260 5.80882 5.84030 6.09884 6.20958 6.41057 6.43774 6.64350 6.75519 6.87330 7.10380 7.30457 7.38519 7.57438 7.69483 7.86503 8.10234 8.40940 8.99427 9.62969 10.71597 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024779 B = 0.002092 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.716839 B =13383.649278 C =13835.443615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.112 3.888 4 H 0.075 0.925 5 C 0.146 3.854 6 H 0.096 0.904 7 C -0.163 4.163 8 N -0.728 5.728 9 C 0.510 3.490 10 O -0.523 6.523 11 C -0.082 4.082 12 C -0.159 4.159 13 C -0.062 4.062 14 C -0.191 4.191 15 C 0.161 3.839 16 O -0.219 6.219 17 C -0.387 4.387 18 H 0.106 0.894 19 C 0.062 3.938 20 N -0.881 5.881 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.219 4.219 26 C -0.059 4.059 27 C -0.169 4.169 28 C -0.175 4.175 29 C -0.172 4.172 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.402 0.598 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.279 0.721 42 H 0.132 0.868 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.410 -1.641 -16.727 31.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C 0.054 3.946 4 H 0.093 0.907 5 C 0.041 3.959 6 H 0.114 0.886 7 C -0.221 4.221 8 N -0.382 5.382 9 C 0.296 3.704 10 O -0.397 6.397 11 C -0.122 4.122 12 C -0.160 4.160 13 C -0.081 4.081 14 C -0.210 4.210 15 C 0.109 3.891 16 O -0.124 6.124 17 C -0.463 4.463 18 H 0.123 0.877 19 C -0.141 4.141 20 N -0.519 5.519 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.238 4.238 26 C -0.077 4.077 27 C -0.188 4.188 28 C -0.212 4.212 29 C -0.209 4.209 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.237 0.763 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.089 0.911 42 H 0.150 0.850 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.801 -0.929 -16.070 30.411 hybrid contribution 0.064 0.346 -0.274 0.446 sum -25.738 -0.582 -16.344 30.494 Atomic orbital electron populations 1.22870 0.81078 1.02766 0.99893 1.87899 1.19499 1.27097 1.94839 1.21999 0.94579 0.85543 0.92503 0.90738 1.21070 0.86097 0.95532 0.93194 0.88584 1.22120 1.01061 1.02081 0.96847 1.46049 1.07996 1.30112 1.54011 1.20996 0.83190 0.86502 0.79670 1.90740 1.83188 1.29685 1.36094 1.20426 0.91561 0.98508 1.01719 1.18711 0.96304 1.04470 0.96503 1.20391 0.93439 0.95869 0.98355 1.20139 0.99773 1.06543 0.94587 1.19129 0.85809 0.92330 0.91819 1.83582 1.34132 1.59203 1.35487 1.20764 1.13475 1.17388 0.94652 0.87684 1.24468 0.96763 0.98251 0.94618 1.69652 1.27622 1.41780 1.12879 0.86179 0.78619 0.81526 0.80564 1.19930 1.20832 1.18358 1.21225 0.96663 1.03717 1.02173 1.20569 0.95462 0.97988 0.93666 1.22696 1.00888 1.02065 0.93107 1.23012 1.03727 0.90599 1.03822 1.22861 0.98945 1.01223 0.97855 0.89618 0.93998 0.94089 0.92350 0.91675 0.91625 0.76341 0.88899 0.89018 0.87263 0.86605 0.91132 0.85002 0.87560 0.86867 0.88776 0.88352 0.88597 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.74 101.05 1.09 1.24 16 2 O -0.37 -2.78 9.13 -35.23 -0.32 -3.10 16 3 C 0.11 0.81 2.18 -26.73 -0.06 0.76 16 4 H 0.07 0.47 7.41 -51.93 -0.38 0.08 16 5 C 0.15 1.40 2.48 -67.93 -0.17 1.23 16 6 H 0.10 1.09 7.58 -51.93 -0.39 0.69 16 7 C -0.16 -1.56 9.29 37.16 0.35 -1.22 16 8 N -0.73 -7.28 4.09 -53.80 -0.22 -7.50 16 9 C 0.51 6.93 7.79 -10.99 -0.09 6.84 16 10 O -0.52 -9.63 15.70 5.55 0.09 -9.54 16 11 C -0.08 -1.02 5.83 -29.04 -0.17 -1.19 16 12 C -0.16 -2.74 4.38 -104.57 -0.46 -3.20 16 13 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 14 C -0.19 -4.00 9.99 -39.39 -0.39 -4.39 16 15 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 16 O -0.22 -5.99 8.59 0.05 0.00 -5.99 16 17 C -0.39 -11.23 9.90 30.88 0.31 -10.93 16 18 H 0.11 3.11 5.52 -52.49 -0.29 2.82 16 19 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 20 N -0.88 -25.99 13.96 55.48 0.77 -25.22 16 21 Si 0.91 22.27 28.62 -169.99 -4.86 17.40 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.22 -4.97 9.13 -39.40 -0.36 -5.33 16 26 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 27 C -0.17 -1.22 5.18 -90.62 -0.47 -1.68 16 28 C -0.17 -1.12 10.18 -26.73 -0.27 -1.39 16 29 C -0.17 -1.04 10.19 -26.73 -0.27 -1.31 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.17 6.73 -51.93 -0.35 -0.18 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.60 7.56 -51.93 -0.39 0.21 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 3.24 8.17 -40.82 -0.33 2.91 16 37 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 41 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.13 3.13 5.71 -52.49 -0.30 2.84 16 43 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.11 0.90 7.22 -51.93 -0.38 0.53 16 45 H 0.09 0.54 8.06 -51.93 -0.42 0.12 16 46 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.09 0.49 6.76 -51.93 -0.35 0.14 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -33.44 398.41 -8.00 -41.44 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -7.37 Total: 4.78 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.09 Total: -18.26 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.55 Total: -32.72 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.23 Total: -18.64 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.86 Total: 17.40 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.44 -8.00 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837009708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.223 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds