Wall clock time and date at job start Tue Mar 31 2020 18:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 114.00195 * 2 1 4 4 H 1.08999 * 109.47136 * 11.76185 * 3 2 1 5 5 C 1.53005 * 109.47032 * 131.75783 * 3 2 1 6 6 H 1.09002 * 109.46892 * 185.00213 * 5 3 2 7 7 C 1.52997 * 109.47310 * 305.00142 * 5 3 2 8 8 N 1.46502 * 109.46604 * 65.00434 * 5 3 2 9 9 C 1.34779 * 119.99652 * 155.00256 * 8 5 3 10 10 O 1.21286 * 119.99887 * 359.97438 * 9 8 5 11 11 C 1.50694 * 119.99824 * 179.97438 * 9 8 5 12 12 C 1.50700 * 109.46938 * 179.97438 * 11 9 8 13 13 C 1.38301 * 119.93413 * 269.72405 * 12 11 9 14 14 C 1.38099 * 120.07407 * 179.72473 * 13 12 11 15 15 C 1.38882 * 119.92567 * 0.57377 * 14 13 12 16 16 O 1.35749 * 120.06833 * 179.68221 * 15 14 13 17 17 C 1.34830 * 116.99940 * 185.70195 * 16 15 14 18 18 H 1.08002 * 120.00076 * 5.17586 * 17 16 15 19 19 C 1.38651 * 119.99993 * 185.17564 * 17 16 15 20 20 N 1.31558 * 120.00060 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00065 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47140 * 89.99849 * 21 19 17 23 23 H 1.48509 * 109.46875 * 210.00057 * 21 19 17 24 24 H 1.48503 * 109.46644 * 329.99411 * 21 19 17 25 25 C 1.38878 * 119.86328 * 359.70547 * 15 14 13 26 26 C 1.38097 * 119.93110 * 0.02562 * 25 15 14 27 27 C 1.53001 * 109.47437 * 251.75976 * 3 2 1 28 28 C 1.53004 * 117.49821 * 130.60883 * 27 3 2 29 29 C 1.52998 * 59.99928 * 252.51279 * 28 27 3 30 30 H 1.08999 * 109.47391 * 172.03040 * 1 2 3 31 31 H 1.08999 * 109.46647 * 292.02850 * 1 2 3 32 32 H 1.09000 * 109.47096 * 52.02599 * 1 2 3 33 33 H 1.09003 * 109.47176 * 300.00177 * 7 5 3 34 34 H 1.09006 * 109.46847 * 59.99476 * 7 5 3 35 35 H 1.08993 * 109.47132 * 179.97438 * 7 5 3 36 36 H 0.96994 * 120.00045 * 334.99208 * 8 5 3 37 37 H 1.08997 * 109.47259 * 299.99912 * 11 9 8 38 38 H 1.09003 * 109.47219 * 60.00286 * 11 9 8 39 39 H 1.08001 * 119.96401 * 359.97438 * 13 12 11 40 40 H 1.07994 * 120.04048 * 180.27920 * 14 13 12 41 41 H 0.97001 * 119.99898 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.03637 * 179.97438 * 25 15 14 43 43 H 1.08001 * 119.96612 * 180.02562 * 26 25 15 44 44 H 1.08998 * 115.54805 * 276.31596 * 27 3 2 45 45 H 1.08998 * 117.49960 * 0.02562 * 28 27 3 46 46 H 1.09005 * 117.49124 * 145.02092 * 28 27 3 47 47 H 1.09000 * 117.50018 * 252.51304 * 29 28 27 48 48 H 1.08993 * 117.49938 * 107.49319 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2390 2.0465 0.2095 5 6 3.0954 1.3805 1.0761 6 1 3.4770 2.3997 1.1367 7 6 2.5024 0.9767 2.4274 8 7 4.1893 0.4692 0.7308 9 6 5.4318 0.6999 1.1993 10 8 5.6443 1.6622 1.9064 11 6 6.5569 -0.2378 0.8447 12 6 7.8321 0.2412 1.4893 13 6 8.6621 1.1152 0.8112 14 6 9.8285 1.5605 1.4014 15 6 10.1736 1.1203 2.6726 16 8 11.3227 1.5511 3.2530 17 6 11.6570 0.9957 4.4352 18 1 11.0666 0.1857 4.8375 19 6 12.7586 1.4644 5.1345 20 7 13.0845 0.9228 6.2883 21 14 13.7794 2.8658 4.4391 22 1 13.2347 4.1609 4.9198 23 1 15.1875 2.7233 4.8891 24 1 13.7276 2.8270 2.9555 25 6 9.3409 0.2381 3.3487 26 6 8.1731 -0.1991 2.7553 27 6 2.6302 1.5877 -1.3700 28 6 2.2771 2.9144 -2.0454 29 6 1.6932 1.6049 -2.5794 30 1 -0.3634 -1.0177 -0.1425 31 1 -0.3632 0.3855 0.9527 32 1 -0.3633 0.6323 -0.8101 33 1 1.6885 1.6547 2.6842 34 1 2.1207 -0.0425 2.3667 35 1 3.2755 1.0298 3.1939 36 1 4.0193 -0.3002 0.1652 37 1 6.3218 -1.2397 1.2040 38 1 6.6836 -0.2604 -0.2377 39 1 8.3958 1.4531 -0.1794 40 1 10.4740 2.2465 0.8732 41 1 13.8550 1.2510 6.7777 42 1 9.6067 -0.1063 4.3372 43 1 7.5249 -0.8848 3.2807 44 1 3.6376 1.1990 -1.5192 45 1 1.6035 3.5863 -1.5135 46 1 3.0524 3.3989 -2.6390 47 1 2.0843 1.2279 -3.5244 48 1 0.6352 1.4151 -2.3990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837009708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:52 Heat of formation + Delta-G solvation = -81.686957 kcal Electronic energy + Delta-G solvation = -28087.807945 eV Core-core repulsion = 24108.663820 eV Total energy + Delta-G solvation = -3979.144124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.26462 -40.72084 -39.73254 -38.29042 -37.00920 -35.99619 -34.51853 -33.24183 -31.83042 -31.63241 -28.72692 -28.33502 -26.80951 -26.56787 -23.70794 -23.33919 -23.13919 -22.19675 -21.45913 -21.07979 -19.82050 -19.10846 -18.26440 -17.76651 -17.17081 -16.76619 -16.50452 -16.37665 -15.77663 -15.75073 -15.71818 -15.64214 -15.43674 -15.13382 -14.61956 -14.42135 -14.32897 -14.18883 -14.09215 -13.98392 -13.51386 -13.05432 -12.96871 -12.76497 -12.56278 -12.45216 -12.41465 -12.39248 -12.36071 -12.28913 -12.07935 -11.92114 -11.29644 -11.26658 -11.05291 -10.94526 -10.76049 -10.45835 -9.96554 -9.77988 -8.97222 -8.50548 -6.22740 0.59289 0.63021 1.29729 1.34764 1.51128 1.78752 2.25000 2.27807 2.61821 2.79958 3.07435 3.12284 3.14552 3.59535 3.79768 3.87336 4.04429 4.06385 4.10801 4.14923 4.18962 4.26996 4.32469 4.45418 4.48258 4.52089 4.58356 4.59898 4.70529 4.71182 4.79401 4.83428 4.84177 4.93563 4.97568 5.01187 5.06418 5.24225 5.25750 5.26217 5.30550 5.38665 5.56977 5.58904 5.75021 5.79993 5.91499 6.25349 6.25665 6.70195 6.83737 7.42547 7.58827 8.61316 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024779 B = 0.002092 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.716839 B =13383.649278 C =13835.443615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.387 6.387 3 C 0.123 3.877 4 H 0.087 0.913 5 C 0.144 3.856 6 H 0.077 0.923 7 C -0.157 4.157 8 N -0.708 5.708 9 C 0.512 3.488 10 O -0.579 6.579 11 C -0.081 4.081 12 C -0.135 4.135 13 C -0.059 4.059 14 C -0.193 4.193 15 C 0.117 3.883 16 O -0.246 6.246 17 C -0.399 4.399 18 H 0.078 0.922 19 C 0.008 3.992 20 N -0.924 5.924 21 Si 0.972 3.028 22 H -0.268 1.268 23 H -0.264 1.264 24 H -0.262 1.262 25 C -0.238 4.238 26 C -0.066 4.066 27 C -0.180 4.180 28 C -0.179 4.179 29 C -0.163 4.163 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.416 0.584 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.153 0.847 40 H 0.128 0.872 41 H 0.285 0.715 42 H 0.105 0.895 43 H 0.131 0.869 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.176 -1.738 -20.149 35.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.306 6.306 3 C 0.064 3.936 4 H 0.105 0.895 5 C 0.039 3.961 6 H 0.095 0.905 7 C -0.215 4.215 8 N -0.361 5.361 9 C 0.300 3.700 10 O -0.458 6.458 11 C -0.120 4.120 12 C -0.136 4.136 13 C -0.077 4.077 14 C -0.212 4.212 15 C 0.068 3.932 16 O -0.154 6.154 17 C -0.475 4.475 18 H 0.096 0.904 19 C -0.190 4.190 20 N -0.564 5.564 21 Si 0.794 3.206 22 H -0.194 1.194 23 H -0.188 1.188 24 H -0.186 1.186 25 C -0.257 4.257 26 C -0.084 4.084 27 C -0.198 4.198 28 C -0.216 4.216 29 C -0.200 4.200 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.253 0.747 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.171 0.829 40 H 0.146 0.854 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.148 0.852 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.115 0.885 47 H 0.118 0.882 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -28.638 -1.073 -19.545 34.689 hybrid contribution 0.539 0.248 0.604 0.846 sum -28.099 -0.825 -18.941 33.897 Atomic orbital electron populations 1.23033 0.79801 1.03731 1.00618 1.87872 1.20899 1.26936 1.94866 1.21828 0.94013 0.86073 0.91642 0.89534 1.21114 0.86487 0.94346 0.94193 0.90522 1.22056 1.00601 1.02913 0.95958 1.45872 1.07105 1.30226 1.52883 1.21094 0.84271 0.85743 0.78937 1.90745 1.84111 1.32123 1.38836 1.20550 0.88349 0.99269 1.03858 1.19297 0.97454 1.01696 0.95137 1.20932 0.91915 0.94850 0.99989 1.20499 1.01019 1.06395 0.93278 1.19682 0.85953 0.94097 0.93432 1.83517 1.36254 1.60546 1.35089 1.20694 1.13770 1.17369 0.95658 0.90409 1.25310 0.97866 1.00890 0.94984 1.69734 1.28795 1.43658 1.14262 0.85199 0.77698 0.78223 0.79456 1.19356 1.18845 1.18625 1.21240 0.98367 1.04500 1.01592 1.20898 0.94364 0.98330 0.94803 1.22659 1.00875 1.02854 0.93455 1.23083 1.03924 0.90728 1.03819 1.22916 0.99179 1.00486 0.97387 0.88703 0.93550 0.93023 0.90743 0.91069 0.94590 0.74735 0.85953 0.84951 0.82925 0.85382 0.90569 0.87673 0.85163 0.87620 0.88139 0.88516 0.88199 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.74 113.37 1.22 1.39 16 2 O -0.39 -4.53 9.13 -148.98 -1.36 -5.89 16 3 C 0.12 1.45 2.18 30.60 0.07 1.52 16 4 H 0.09 0.83 7.41 -2.39 -0.02 0.81 16 5 C 0.14 2.47 2.48 44.99 0.11 2.58 16 6 H 0.08 1.67 7.58 -2.39 -0.02 1.65 16 7 C -0.16 -2.78 9.29 71.98 0.67 -2.12 16 8 N -0.71 -12.16 4.09 -442.52 -1.81 -13.97 16 9 C 0.51 12.49 7.79 87.65 0.68 13.17 16 10 O -0.58 -20.66 15.70 -3.05 -0.05 -20.71 16 11 C -0.08 -1.65 5.83 29.10 0.17 -1.48 16 12 C -0.13 -4.28 4.38 -19.83 -0.09 -4.36 16 13 C -0.06 -1.95 9.69 22.25 0.22 -1.73 16 14 C -0.19 -7.94 9.99 22.39 0.22 -7.72 16 15 C 0.12 5.89 6.65 22.58 0.15 6.04 16 16 O -0.25 -14.16 8.59 -22.73 -0.20 -14.36 16 17 C -0.40 -24.63 9.90 67.92 0.67 -23.96 16 18 H 0.08 5.05 5.52 -2.91 -0.02 5.03 16 19 C 0.01 0.46 5.49 84.83 0.47 0.92 16 20 N -0.92 -56.96 13.96 21.61 0.30 -56.66 16 21 Si 0.97 47.28 28.62 68.60 1.96 49.24 16 22 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 25 C -0.24 -11.33 9.13 22.39 0.20 -11.13 16 26 C -0.07 -2.49 9.69 22.25 0.22 -2.27 16 27 C -0.18 -2.09 5.18 -10.79 -0.06 -2.15 16 28 C -0.18 -1.85 10.18 30.59 0.31 -1.54 16 29 C -0.16 -1.48 10.19 30.59 0.31 -1.17 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.05 0.26 6.73 -2.39 -0.02 0.24 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.17 7.56 -2.38 -0.02 1.15 16 35 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.42 5.10 8.17 -92.71 -0.76 4.35 16 37 H 0.12 1.90 8.08 -2.39 -0.02 1.88 16 38 H 0.13 1.75 8.08 -2.39 -0.02 1.73 16 39 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.13 4.86 8.06 -2.91 -0.02 4.83 16 41 H 0.28 16.05 8.31 -92.71 -0.77 15.28 16 42 H 0.11 5.49 5.71 -2.91 -0.02 5.47 16 43 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 44 H 0.11 1.38 7.22 -2.39 -0.02 1.36 16 45 H 0.10 0.90 8.06 -2.39 -0.02 0.88 16 46 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.10 0.83 8.14 -2.39 -0.02 0.82 16 48 H 0.10 0.74 6.76 -2.39 -0.02 0.72 16 Total: -1.00 -78.30 398.41 4.61 -73.69 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.21 Total: 22.66 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 5.55 Total: -34.00 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -1.51 Total: -70.63 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -1.60 Total: -40.96 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.96 Total: 49.24 kcal Total: -78.30 4.61 -73.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837009708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.000 kcal (2) G-P(sol) polarization free energy of solvation -78.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds