Wall clock time and date at job start Tue Mar 31 2020 18:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.64841 * 2 1 4 4 C 1.54943 * 110.87896 * 236.73890 * 2 1 3 5 5 N 1.48529 * 103.23110 * 204.15497 * 4 2 1 6 6 C 1.46896 * 111.00073 * 159.72217 * 5 4 2 7 7 C 1.50696 * 109.47263 * 52.60847 * 6 5 4 8 8 O 1.21288 * 119.99961 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99977 * 180.02562 * 7 6 5 10 10 C 1.37095 * 119.99511 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00685 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99643 * 179.97438 * 10 9 7 13 13 N 1.31418 * 120.00262 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99944 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.47104 * 90.00103 * 14 12 10 16 16 H 1.48502 * 109.47137 * 209.99894 * 14 12 10 17 17 H 1.48501 * 109.47131 * 329.99988 * 14 12 10 18 18 C 1.47906 * 105.81645 * 39.20833 * 5 4 2 19 19 C 1.53997 * 107.05871 * 334.66750 * 18 5 4 20 20 H 1.09005 * 110.30580 * 120.14185 * 19 18 5 21 21 C 1.53004 * 110.30778 * 242.30679 * 19 18 5 22 22 N 1.46500 * 109.47035 * 293.54560 * 21 19 18 23 23 C 1.34778 * 119.99324 * 179.97438 * 22 21 19 24 24 O 1.21276 * 120.00359 * 0.02562 * 23 22 21 25 25 C 1.50707 * 119.99476 * 179.97438 * 23 22 21 26 26 C 1.52994 * 109.47124 * 205.00056 * 25 23 22 27 27 F 1.39894 * 109.47417 * 325.00614 * 25 23 22 28 28 F 1.39909 * 109.46602 * 85.00517 * 25 23 22 29 29 H 1.08998 * 109.47159 * 296.85192 * 1 2 3 30 30 H 1.09006 * 109.46867 * 56.84621 * 1 2 3 31 31 H 1.09003 * 109.46992 * 176.84533 * 1 2 3 32 32 H 1.08995 * 110.66363 * 322.59604 * 4 2 1 33 33 H 1.09004 * 110.66081 * 85.55507 * 4 2 1 34 34 H 1.09002 * 109.47199 * 172.60745 * 6 5 4 35 35 H 1.09006 * 109.47203 * 292.60633 * 6 5 4 36 36 H 0.97001 * 120.00040 * 359.97438 * 9 7 6 37 37 H 0.96993 * 120.00206 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.91583 * 215.31824 * 18 5 4 39 39 H 1.09004 * 109.91554 * 94.02407 * 18 5 4 40 40 H 1.08998 * 109.46452 * 53.54971 * 21 19 18 41 41 H 1.09005 * 109.46459 * 173.54559 * 21 19 18 42 42 H 0.97000 * 120.00310 * 0.02562 * 22 21 19 43 43 H 1.09000 * 109.47069 * 60.00531 * 26 25 23 44 44 H 1.08997 * 109.47392 * 180.02562 * 26 25 23 45 45 H 1.09007 * 109.47458 * 300.00640 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0822 -0.7940 -1.2105 5 7 3.4360 -1.2051 -0.7585 6 6 3.9294 -2.3449 -1.5428 7 6 3.8312 -2.0238 -3.0119 8 8 3.3929 -0.9512 -3.3703 9 7 4.2296 -2.9290 -3.9276 10 6 4.1398 -2.6370 -5.2641 11 1 3.7495 -1.6819 -5.5833 12 6 4.5509 -3.5700 -6.2082 13 7 4.4644 -3.2904 -7.4893 14 14 5.2267 -5.2217 -5.6562 15 1 4.1138 -6.1981 -5.5403 16 1 6.2128 -5.7111 -6.6529 17 1 5.8907 -5.0689 -4.3367 18 6 3.2921 -1.5662 0.6686 19 6 2.0770 -0.7907 1.2106 20 1 1.3218 -1.4829 1.5829 21 6 2.5116 0.1696 2.3196 22 7 2.9779 -0.5992 3.4762 23 6 3.4132 0.0408 4.5796 24 8 3.4184 1.2530 4.6151 25 6 3.8923 -0.7500 5.7697 26 6 3.7356 0.0914 7.0378 27 9 3.1332 -1.9191 5.8890 28 9 5.2396 -1.0845 5.5954 29 1 -0.3633 0.4642 0.9168 30 1 -0.3633 0.5621 -0.8604 31 1 -0.3633 -1.0261 -0.0566 32 1 1.4623 -1.6674 -1.4127 33 1 2.1454 -0.1562 -2.0923 34 1 4.9694 -2.5419 -1.2827 35 1 3.3265 -3.2259 -1.3224 36 1 4.5798 -3.7870 -3.6410 37 1 4.7511 -3.9418 -8.1483 38 1 4.1898 -1.2798 1.2164 39 1 3.1213 -2.6385 0.7648 40 1 3.3197 0.8037 1.9550 41 1 1.6661 0.7915 2.6136 42 1 2.9741 -1.5688 3.4477 43 1 2.6860 0.3521 7.1735 44 1 4.0825 -0.4803 7.8984 45 1 4.3271 1.0024 6.9448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101675813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:07 Heat of formation + Delta-G solvation = -160.986685 kcal Electronic energy + Delta-G solvation = -28992.204183 eV Core-core repulsion = 24487.684586 eV Total energy + Delta-G solvation = -4504.519597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.67413 -47.67008 -40.36519 -39.49369 -38.00716 -35.46677 -34.07179 -33.23396 -32.08518 -31.70241 -30.46339 -28.04807 -26.49478 -25.43290 -24.47182 -23.04591 -21.45760 -20.72711 -20.16732 -19.44495 -18.95523 -18.30662 -18.25103 -17.22705 -16.41461 -16.11422 -15.72128 -15.50875 -15.19648 -15.00021 -14.84058 -14.55566 -14.51890 -13.98676 -13.87109 -13.78275 -13.51241 -13.34695 -13.13039 -13.10029 -12.90496 -12.85461 -12.48213 -12.46075 -12.28070 -12.09313 -11.89696 -11.71310 -11.31341 -11.06105 -11.00247 -10.73676 -10.63118 -10.60009 -10.31458 -10.00678 -9.63100 -9.58082 -8.53114 -8.23520 -8.06024 -6.34452 -3.86011 1.69291 2.16374 3.00285 3.03954 3.12765 3.23457 3.46916 3.68420 3.93542 4.02520 4.04348 4.07721 4.35527 4.40169 4.59417 4.77325 4.89738 5.02829 5.06256 5.16357 5.17958 5.25468 5.35272 5.38116 5.44947 5.48914 5.55664 5.62764 5.71076 5.79571 5.83347 5.86509 5.89536 5.98547 6.07439 6.31098 6.59981 6.75012 7.10662 7.14657 7.38151 7.54543 8.11009 8.55896 8.91464 9.38443 9.78404 10.78471 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.002316 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.963808 B =12084.717794 C =13066.638478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.087 0.913 4 C 0.043 3.957 5 N -0.494 5.494 6 C 0.033 3.967 7 C 0.451 3.549 8 O -0.562 6.562 9 N -0.588 5.588 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.880 5.880 14 Si 0.879 3.121 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.033 3.967 19 C -0.109 4.109 20 H 0.083 0.917 21 C 0.127 3.873 22 N -0.708 5.708 23 C 0.485 3.515 24 O -0.502 6.502 25 C 0.281 3.719 26 C -0.183 4.183 27 F -0.190 7.190 28 F -0.181 7.181 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.370 0.630 37 H 0.274 0.726 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.408 0.592 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.696 1.103 27.874 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.105 0.895 4 C -0.084 4.084 5 N -0.218 5.218 6 C -0.099 4.099 7 C 0.237 3.763 8 O -0.444 6.444 9 N -0.227 5.227 10 C -0.434 4.434 11 H 0.138 0.862 12 C -0.162 4.162 13 N -0.520 5.520 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.195 1.195 18 C -0.095 4.095 19 C -0.128 4.128 20 H 0.101 0.899 21 C 0.004 3.996 22 N -0.359 5.359 23 C 0.265 3.735 24 O -0.376 6.376 25 C 0.241 3.759 26 C -0.240 4.240 27 F -0.171 7.171 28 F -0.162 7.162 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.138 0.862 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.243 0.757 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.555 3.023 27.307 27.849 hybrid contribution 0.216 -2.970 0.309 2.994 sum -4.339 0.053 27.616 27.955 Atomic orbital electron populations 1.21768 0.94422 1.01915 1.01876 1.22146 0.95370 1.00117 0.93320 0.89481 1.23570 0.87136 0.99199 0.98525 1.64592 1.24792 1.32066 1.00342 1.22146 1.01589 0.92329 0.93792 1.19594 0.84434 0.85890 0.86432 1.90480 1.49132 1.23941 1.80895 1.42200 1.57903 1.15651 1.06974 1.19425 1.40571 1.04678 0.78679 0.86219 1.25049 0.97693 0.98344 0.95079 1.69619 1.46720 1.35771 0.99860 0.86676 0.79664 0.84251 0.78835 1.19666 1.20116 1.19456 1.23078 0.97724 0.97719 0.90987 1.22388 0.97724 0.97449 0.95265 0.89856 1.21652 1.00264 0.93961 0.83683 1.46079 1.63792 1.11298 1.14761 1.20711 0.79658 0.88847 0.84292 1.90800 1.53004 1.12606 1.81197 1.21392 0.74595 0.82372 0.97553 1.22640 1.06304 1.01315 0.93780 1.93064 1.75634 1.51338 1.97038 1.93111 1.33344 1.93131 1.96573 0.92715 0.91918 0.92727 0.94380 0.86165 0.89108 0.93253 0.79684 0.91574 0.90299 0.93732 0.89952 0.90631 0.75688 0.88784 0.89059 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.17 37.16 0.34 -1.01 16 2 C -0.09 -1.01 3.19 -88.76 -0.28 -1.30 16 3 H 0.09 1.02 7.86 -51.93 -0.41 0.61 16 4 C 0.04 0.66 4.75 -1.90 -0.01 0.65 16 5 N -0.49 -7.62 5.26 -231.89 -1.22 -8.84 16 6 C 0.03 0.55 5.52 -4.98 -0.03 0.52 16 7 C 0.45 9.99 7.49 -10.99 -0.08 9.91 16 8 O -0.56 -14.41 13.10 5.55 0.07 -14.33 16 9 N -0.59 -13.80 5.09 -10.97 -0.06 -13.85 16 10 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 11 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 12 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 13 N -0.88 -25.48 13.96 55.50 0.77 -24.70 16 14 Si 0.88 19.17 27.73 -169.99 -4.71 14.45 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 18 C 0.03 0.37 6.05 -2.75 -0.02 0.36 16 19 C -0.11 -1.02 2.64 -89.26 -0.24 -1.26 16 20 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16 21 C 0.13 1.16 4.75 -4.04 -0.02 1.14 16 22 N -0.71 -5.92 5.22 -60.29 -0.31 -6.24 16 23 C 0.48 4.70 7.23 -10.98 -0.08 4.62 16 24 O -0.50 -6.26 16.09 5.56 0.09 -6.17 16 25 C 0.28 2.25 2.47 -27.88 -0.07 2.18 16 26 C -0.18 -1.05 8.91 37.15 0.33 -0.72 16 27 F -0.19 -1.48 16.51 2.25 0.04 -1.44 16 28 F -0.18 -1.69 17.05 2.25 0.04 -1.66 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.51 8.11 -51.93 -0.42 0.09 16 32 H 0.04 0.59 7.91 -51.93 -0.41 0.18 16 33 H 0.12 2.30 5.97 -51.93 -0.31 1.99 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.05 0.71 7.81 -51.93 -0.41 0.31 16 36 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.08 0.86 7.57 -51.93 -0.39 0.47 16 39 H 0.04 0.45 7.57 -51.93 -0.39 0.06 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.41 2.73 7.87 -40.82 -0.32 2.40 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.10 0.62 7.87 -51.92 -0.41 0.21 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -32.78 373.42 -6.69 -39.47 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.63 Total: 10.23 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -0.40 Total: 7.45 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.82 Total: -53.63 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.16 Total: -20.50 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.08 Total: -3.10 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.78 -6.69 -39.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101675813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.518 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds