Wall clock time and date at job start Tue Mar 31 2020 18:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47467 * 2 1 4 4 C 1.46505 * 120.00178 * 270.00301 * 3 2 1 5 5 C 1.52998 * 109.46696 * 269.99761 * 4 3 2 6 6 H 1.08992 * 109.87303 * 58.99635 * 5 4 3 7 7 C 1.54105 * 109.87334 * 180.02562 * 5 4 3 8 8 C 1.54811 * 104.18671 * 121.45486 * 7 5 4 9 9 C 1.54997 * 102.09580 * 20.87689 * 8 7 5 10 10 O 1.43740 * 109.87917 * 297.82712 * 5 4 3 11 11 C 1.34781 * 120.00058 * 89.99474 * 3 2 1 12 12 O 1.21282 * 120.00169 * 180.02562 * 11 3 2 13 13 C 1.50703 * 119.99732 * 0.28551 * 11 3 2 14 14 C 1.50706 * 109.46868 * 179.72173 * 13 11 3 15 15 C 1.38322 * 119.96562 * 89.99853 * 14 13 11 16 16 C 1.38279 * 120.13618 * 179.97438 * 15 14 13 17 17 C 1.38125 * 120.06862 * 359.97438 * 16 15 14 18 18 C 1.38848 * 119.93070 * 0.02562 * 17 16 15 19 19 O 1.35758 * 120.06883 * 180.02562 * 18 17 16 20 20 C 1.34827 * 116.99907 * 354.46642 * 19 18 17 21 21 H 1.07994 * 119.99768 * 5.05721 * 20 19 18 22 22 C 1.38651 * 120.00152 * 185.05638 * 20 19 18 23 23 N 1.31564 * 119.99738 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00286 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46992 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47071 * 120.00003 * 24 22 20 27 27 H 1.48500 * 109.47269 * 240.00025 * 24 22 20 28 28 C 1.38074 * 119.96050 * 269.72036 * 14 13 11 29 29 H 1.09002 * 109.46933 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46828 * 299.99694 * 1 2 3 31 31 H 1.08995 * 109.46749 * 59.99890 * 1 2 3 32 32 H 1.09007 * 109.47018 * 239.99694 * 2 1 3 33 33 H 1.09000 * 109.47189 * 120.00272 * 2 1 3 34 34 H 1.09000 * 109.47069 * 29.99572 * 4 3 2 35 35 H 1.09000 * 109.46906 * 149.99459 * 4 3 2 36 36 H 1.09005 * 110.48336 * 240.12508 * 7 5 4 37 37 H 1.08997 * 110.49105 * 2.64369 * 7 5 4 38 38 H 1.09002 * 110.90494 * 139.07871 * 8 7 5 39 39 H 1.08999 * 110.90682 * 262.67586 * 8 7 5 40 40 H 1.09004 * 110.61470 * 81.47552 * 9 8 7 41 41 H 1.08993 * 110.61716 * 204.31954 * 9 8 7 42 42 H 1.09003 * 109.46700 * 299.71712 * 13 11 3 43 43 H 1.08997 * 109.47406 * 59.72134 * 13 11 3 44 44 H 1.08003 * 119.93350 * 359.97187 * 15 14 13 45 45 H 1.08000 * 119.96529 * 179.97438 * 16 15 14 46 46 H 1.07998 * 120.03457 * 179.97438 * 17 16 15 47 47 H 0.96999 * 119.99737 * 179.97438 * 23 22 20 48 48 H 1.07997 * 120.03757 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8313 -1.7104 6 1 3.8868 0.7624 -1.8255 7 6 3.9749 2.5547 -3.0446 8 6 5.1479 3.5140 -2.7277 9 6 5.7642 2.8663 -1.4616 10 8 4.6134 2.3799 -0.7385 11 6 2.2430 2.0165 1.1672 12 8 2.6469 3.1601 1.1673 13 6 1.9978 1.3039 2.4723 14 6 2.3294 2.2255 3.6178 15 6 1.3516 3.0473 4.1487 16 6 1.6519 3.8938 5.2000 17 6 2.9298 3.9207 5.7237 18 6 3.9134 3.0969 5.1929 19 8 5.1702 3.1206 5.7058 20 6 5.4279 4.0464 6.6515 21 1 4.6311 4.6713 7.0267 22 6 6.7160 4.1960 7.1424 23 7 7.6866 3.4342 6.6857 24 14 7.0733 5.4790 8.4521 25 1 5.8206 6.1994 8.7941 26 1 7.6071 4.8114 9.6665 27 1 8.0761 6.4458 7.9375 28 6 3.6075 2.2442 4.1399 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1383 36 1 4.2643 1.8397 -3.8148 37 1 3.0944 3.1157 -3.3575 38 1 5.8681 3.5313 -3.5457 39 1 4.7820 4.5179 -2.5122 40 1 6.4231 2.0419 -1.7343 41 1 6.3037 3.6092 -0.8743 42 1 0.9500 1.0097 2.5343 43 1 2.6282 0.4164 2.5258 44 1 0.3516 3.0279 3.7412 45 1 0.8865 4.5347 5.6121 46 1 3.1638 4.5823 6.5445 47 1 8.5877 3.5391 7.0288 48 1 4.3694 1.5993 3.7276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089775719.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:56 Heat of formation + Delta-G solvation = -82.643144 kcal Electronic energy + Delta-G solvation = -29015.046061 eV Core-core repulsion = 25035.860473 eV Total energy + Delta-G solvation = -3979.185588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.18026 -39.17515 -38.57584 -36.46585 -35.75321 -32.56036 -32.21647 -31.99271 -31.29620 -29.62298 -29.03520 -27.23828 -25.40325 -24.93918 -23.49017 -22.23366 -21.53219 -21.20826 -20.69979 -18.97881 -17.50293 -17.11428 -16.87761 -16.49675 -16.14100 -15.67633 -15.26391 -15.08874 -14.75444 -14.35082 -14.24826 -13.98835 -13.71285 -13.65894 -13.39146 -13.32321 -12.88185 -12.67678 -12.52103 -12.33550 -12.27964 -12.01319 -11.79214 -11.67308 -11.52446 -11.45461 -11.18895 -11.15381 -11.14062 -10.88535 -10.73408 -10.62617 -10.47684 -10.34053 -9.71721 -9.42359 -9.20772 -8.73336 -8.56770 -7.91365 -7.08252 -6.33606 -3.92186 2.23925 2.52755 3.00019 3.08076 3.19447 3.21099 3.26276 3.86870 4.05907 4.40920 4.55810 4.58097 4.69602 4.74422 4.87079 4.93563 5.05912 5.10598 5.12269 5.17276 5.20785 5.31260 5.37196 5.39526 5.45150 5.50535 5.54945 5.60445 5.64129 5.65944 5.77696 5.81839 5.87280 5.91322 5.94409 5.98620 6.06467 6.31101 6.48157 6.55332 6.79802 6.99109 7.05866 7.19809 7.41794 7.49241 7.51869 7.57437 7.96809 8.12054 8.54963 9.12420 9.84990 10.85021 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012079 B = 0.003132 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.503700 B = 8938.177264 C =10575.624970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.621 5.621 4 C 0.120 3.880 5 C 0.058 3.942 6 H 0.063 0.937 7 C -0.149 4.149 8 C -0.154 4.154 9 C 0.045 3.955 10 O -0.347 6.347 11 C 0.519 3.481 12 O -0.500 6.500 13 C -0.092 4.092 14 C -0.030 4.030 15 C -0.196 4.196 16 C -0.076 4.076 17 C -0.232 4.232 18 C 0.155 3.845 19 O -0.181 6.181 20 C -0.388 4.388 21 H 0.091 0.909 22 C 0.037 3.963 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.277 1.277 28 C -0.171 4.171 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.125 0.875 47 H 0.268 0.732 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.030 -6.903 -19.260 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.356 5.356 4 C -0.003 4.003 5 C -0.001 4.001 6 H 0.081 0.919 7 C -0.187 4.187 8 C -0.191 4.191 9 C -0.032 4.032 10 O -0.266 6.266 11 C 0.307 3.693 12 O -0.372 6.372 13 C -0.132 4.132 14 C -0.031 4.031 15 C -0.215 4.215 16 C -0.094 4.094 17 C -0.251 4.251 18 C 0.102 3.898 19 O -0.085 6.085 20 C -0.465 4.465 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.501 5.501 24 Si 0.765 3.235 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.190 4.190 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.119 0.881 45 H 0.124 0.876 46 H 0.143 0.857 47 H 0.077 0.923 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.390 -6.417 -19.004 23.066 hybrid contribution 0.227 0.561 0.283 0.667 sum -11.163 -5.856 -18.721 22.569 Atomic orbital electron populations 1.22239 0.96062 1.02174 1.02604 1.21534 0.94207 0.82852 1.03280 1.47924 1.67882 1.14107 1.05715 1.21596 0.93667 0.99549 0.85493 1.23181 0.91600 0.97201 0.88159 0.91883 1.22932 0.99520 0.98877 0.97365 1.23121 0.97515 0.99988 0.98514 1.23529 0.89470 0.97711 0.92512 1.89133 1.29169 1.78961 1.29302 1.20600 0.77063 0.87009 0.84667 1.90752 1.42139 1.17636 1.86669 1.20642 1.03113 0.98599 0.90839 1.18690 0.93285 0.96601 0.94522 1.20326 0.98213 1.01864 1.01133 1.20658 0.95617 0.97317 0.95800 1.21154 0.93661 1.05284 1.05045 1.19269 0.86017 0.92972 0.91516 1.83979 1.23360 1.51182 1.50005 1.21357 0.95297 1.14306 1.15532 0.89140 1.25262 0.94363 0.98252 0.98726 1.70061 1.01026 1.37522 1.41479 0.85666 0.78895 0.79506 0.79460 1.19149 1.20249 1.20223 1.19943 0.96102 1.04054 0.98932 0.91548 0.92108 0.92520 0.90741 0.90033 0.89949 0.89336 0.90783 0.90415 0.90493 0.90376 0.92640 0.88851 0.88799 0.88620 0.88097 0.87596 0.85707 0.92259 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.24 37.16 0.38 -0.78 16 2 C 0.10 0.84 5.94 -4.04 -0.02 0.82 16 3 N -0.62 -7.40 2.44 -173.68 -0.42 -7.83 16 4 C 0.12 1.29 4.95 -4.04 -0.02 1.27 16 5 C 0.06 0.64 3.69 -26.16 -0.10 0.54 16 6 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 7 C -0.15 -1.24 6.64 -25.20 -0.17 -1.41 16 8 C -0.15 -1.45 7.15 -24.72 -0.18 -1.63 16 9 C 0.04 0.55 7.72 38.21 0.29 0.84 16 10 O -0.35 -5.42 9.92 -42.77 -0.42 -5.85 16 11 C 0.52 8.40 7.24 -10.98 -0.08 8.32 16 12 O -0.50 -10.55 14.85 -1.98 -0.03 -10.58 16 13 C -0.09 -1.37 4.38 -29.03 -0.13 -1.50 16 14 C -0.03 -0.60 4.37 -104.65 -0.46 -1.05 16 15 C -0.20 -3.77 9.70 -39.54 -0.38 -4.15 16 16 C -0.08 -1.53 10.04 -39.61 -0.40 -1.93 16 17 C -0.23 -5.49 9.17 -39.40 -0.36 -5.85 16 18 C 0.16 4.07 6.65 -39.11 -0.26 3.81 16 19 O -0.18 -5.50 9.76 0.03 0.00 -5.50 16 20 C -0.39 -11.43 9.49 30.89 0.29 -11.14 16 21 H 0.09 2.48 5.20 -52.49 -0.27 2.21 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 23 N -0.87 -26.39 13.67 55.48 0.76 -25.63 16 24 Si 0.94 21.43 29.55 -169.99 -5.02 16.41 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 28 C -0.17 -3.99 9.64 -39.39 -0.38 -4.37 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.47 7.24 -51.93 -0.38 0.10 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.47 8.07 -51.92 -0.42 0.05 16 33 H 0.08 0.64 6.43 -51.93 -0.33 0.30 16 34 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.09 1.16 7.42 -51.93 -0.39 0.77 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.57 7.70 -51.93 -0.40 0.17 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.11 7.16 -51.93 -0.37 0.74 16 43 H 0.10 1.27 7.34 -51.93 -0.38 0.89 16 44 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 45 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 46 H 0.13 2.93 5.64 -52.49 -0.30 2.63 16 47 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.11 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 391.90 15.07 5.91 5.91 Total: -1.00 -36.94 391.90 -8.74 -45.68 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.44 Total: 4.60 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.06 Total: -17.22 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.33 Total: -33.45 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.45 Total: -21.92 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.94 -8.74 -45.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089775719.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.967 kcal (2) G-P(sol) polarization free energy of solvation -36.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds