Wall clock time and date at job start Tue Mar 31 2020 18:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.46496 * 119.99759 * 90.00495 * 3 2 1 5 5 C 1.50695 * 109.47390 * 89.99689 * 4 3 2 6 6 H 1.08001 * 120.00425 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99997 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99547 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47560 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46717 * 120.00344 * 9 7 5 12 12 H 1.48502 * 109.46830 * 239.99808 * 9 7 5 13 13 C 1.34771 * 120.00084 * 270.00167 * 3 2 1 14 14 O 1.21693 * 119.99953 * 180.02562 * 13 3 2 15 15 C 1.46429 * 119.99982 * 359.97438 * 13 3 2 16 16 C 1.34807 * 119.99875 * 179.97438 * 15 13 3 17 17 C 1.47213 * 120.00131 * 180.02562 * 16 15 13 18 18 C 1.39874 * 120.14150 * 359.97438 * 17 16 15 19 19 C 1.37904 * 119.93829 * 180.02562 * 18 17 16 20 20 C 1.38329 * 120.23003 * 359.97355 * 19 18 17 21 21 C 1.38861 * 120.29098 * 0.02930 * 20 19 18 22 22 O 1.35916 * 119.96872 * 180.02562 * 21 20 19 23 23 C 1.42898 * 116.99865 * 359.97438 * 22 21 20 24 24 C 1.53000 * 109.46898 * 179.97438 * 23 22 21 25 25 O 1.42899 * 109.47231 * 64.99909 * 24 23 22 26 26 C 1.42901 * 114.00185 * 180.02562 * 25 24 23 27 27 C 1.38419 * 120.05917 * 359.71616 * 21 20 19 28 28 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 29 29 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 30 30 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 32 32 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 33 33 H 1.09001 * 109.47057 * 210.00204 * 4 3 2 34 34 H 1.08999 * 109.47333 * 329.99764 * 4 3 2 35 35 H 0.96998 * 119.99696 * 179.97438 * 8 7 5 36 36 H 1.08001 * 120.00307 * 0.02562 * 15 13 3 37 37 H 1.08002 * 120.00343 * 359.97438 * 16 15 13 38 38 H 1.08002 * 120.03201 * 0.02562 * 18 17 16 39 39 H 1.08001 * 119.88223 * 179.97438 * 19 18 17 40 40 H 1.08006 * 119.85333 * 180.02562 * 20 19 18 41 41 H 1.08994 * 109.47354 * 300.00267 * 23 22 21 42 42 H 1.09003 * 109.47131 * 60.00368 * 23 22 21 43 43 H 1.08992 * 109.47461 * 185.00334 * 24 23 22 44 44 H 1.09009 * 109.47218 * 305.00166 * 24 23 22 45 45 H 1.08997 * 109.47207 * 60.00246 * 26 25 24 46 46 H 1.09004 * 109.47094 * 180.02562 * 26 25 24 47 47 H 1.09001 * 109.47161 * 299.99747 * 26 25 24 48 48 H 1.07993 * 120.12080 * 180.30310 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6858 1.8350 1.7037 6 1 4.3430 1.2309 1.0957 7 6 4.1495 2.3904 2.8775 8 7 3.3495 3.1264 3.6176 9 14 5.9139 2.0973 3.4162 10 1 6.6012 1.2412 2.4164 11 1 6.6211 3.3987 3.5240 12 1 5.9219 1.4188 4.7371 13 6 2.2429 2.0166 -1.1671 14 8 2.6490 3.1638 -1.1671 15 6 1.9994 1.3262 -2.4353 16 6 2.2236 1.9619 -3.6027 17 6 1.9782 1.2680 -4.8777 18 6 1.5130 -0.0511 -4.8812 19 6 1.2851 -0.6973 -6.0780 20 6 1.5144 -0.0453 -7.2762 21 6 1.9763 1.2642 -7.2838 22 8 2.1989 1.8988 -8.4650 23 6 1.9370 1.1582 -9.6587 24 6 2.2428 2.0308 -10.8776 25 8 3.6407 2.3251 -10.9142 26 6 4.0345 3.1400 -12.0201 27 6 2.2041 1.9260 -6.0896 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.0956 3.1410 1.1385 34 1 1.5818 1.6877 2.0284 35 1 3.6756 3.5168 4.4435 36 1 1.6394 0.3079 -2.4353 37 1 2.5824 2.9806 -3.6027 38 1 1.3325 -0.5631 -3.9475 39 1 0.9263 -1.7160 -6.0796 40 1 1.3334 -0.5571 -8.2099 41 1 2.5674 0.2693 -9.6804 42 1 0.8886 0.8607 -9.6791 43 1 1.9597 1.4987 -11.7857 44 1 1.6775 2.9605 -10.8100 45 1 3.5064 4.0925 -11.9757 46 1 5.1090 3.3175 -11.9762 47 1 3.7884 2.6311 -12.9521 48 1 2.5586 2.9461 -6.0944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275690923.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:32 Heat of formation + Delta-G solvation = -75.133681 kcal Electronic energy + Delta-G solvation = -27168.887791 eV Core-core repulsion = 23190.027837 eV Total energy + Delta-G solvation = -3978.859953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.38244 -39.09715 -38.45201 -37.49316 -35.29469 -33.68843 -32.70716 -31.70935 -30.23973 -30.00239 -29.14808 -27.16224 -26.78894 -24.64119 -23.41116 -22.96069 -22.76418 -21.99226 -20.23487 -18.29492 -17.90601 -17.29043 -16.84624 -16.60916 -16.34392 -15.98603 -15.86972 -15.53642 -15.44371 -14.92415 -14.47741 -14.28116 -14.02611 -13.55331 -13.52894 -13.33240 -13.13017 -12.97502 -12.74924 -12.35988 -12.28757 -12.04348 -11.94502 -11.78463 -11.67337 -11.47870 -11.31195 -11.16259 -10.96314 -10.85626 -10.70037 -10.47786 -10.18792 -10.14685 -10.09025 -9.57917 -8.94932 -8.56810 -8.40485 -8.18916 -7.59551 -6.00991 -4.05416 0.58769 1.29713 2.16139 2.83475 3.24244 3.32433 3.40001 3.44500 3.66880 3.96963 4.11699 4.35959 4.48034 4.58051 4.60035 4.65693 4.75064 4.78874 4.88197 4.91556 4.93881 5.05093 5.08394 5.21045 5.25995 5.26753 5.33536 5.34026 5.46864 5.59560 5.67239 5.77121 5.82325 6.06323 6.06998 6.12951 6.25505 6.26890 6.43912 6.52968 6.58644 6.64277 6.71113 7.14058 7.18872 7.49000 7.59268 7.95975 8.27273 8.46483 8.94098 9.13375 9.59566 11.07025 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.001950 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.229447 B =14354.813800 C =15406.041100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.590 5.590 4 C 0.245 3.755 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.532 3.468 14 O -0.543 6.543 15 C -0.177 4.177 16 C -0.057 4.057 17 C -0.017 4.017 18 C -0.145 4.145 19 C -0.080 4.080 20 C -0.210 4.210 21 C 0.128 3.872 22 O -0.307 6.307 23 C 0.061 3.939 24 C 0.062 3.938 25 O -0.384 6.384 26 C 0.031 3.969 27 C -0.134 4.134 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.033 0.967 35 H 0.262 0.738 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.041 0.959 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 -8.724 -29.104 31.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.321 5.321 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.320 3.680 14 O -0.423 6.423 15 C -0.198 4.198 16 C -0.076 4.076 17 C -0.017 4.017 18 C -0.163 4.163 19 C -0.098 4.098 20 C -0.229 4.229 21 C 0.083 3.917 22 O -0.221 6.221 23 C -0.014 4.014 24 C -0.015 4.015 25 O -0.303 6.303 26 C -0.066 4.066 27 C -0.153 4.153 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.059 0.941 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.793 -7.891 -28.783 30.608 hybrid contribution 0.677 -0.382 0.076 0.781 sum -6.116 -8.273 -28.707 30.495 Atomic orbital electron populations 1.22240 0.96739 1.01371 1.02476 1.21456 0.93526 0.84239 1.02662 1.48165 1.62968 1.13184 1.07743 1.19291 0.96305 0.93724 0.78101 1.21489 0.96903 1.31762 1.06187 0.92368 1.24941 0.97863 0.94953 0.96425 1.69943 1.35573 1.33551 1.14332 0.86442 0.84672 0.78056 0.78257 1.19789 1.20878 1.21008 1.18147 0.79190 0.86491 0.84124 1.90779 1.46151 1.17878 1.87459 1.23395 1.02501 1.00653 0.93241 1.22255 0.95570 0.99890 0.89922 1.18855 0.97113 0.93465 0.92273 1.21349 1.02035 0.94436 0.98490 1.20836 0.97860 0.99515 0.91593 1.21281 1.07529 0.94706 0.99363 1.18835 0.95939 0.91259 0.85621 1.86141 1.82918 1.41080 1.11929 1.22827 1.00767 0.95171 0.82661 1.22579 0.83560 0.99372 0.95962 1.87983 1.23230 1.71066 1.48007 1.22773 1.01389 0.93887 0.88531 1.20602 1.04700 1.01063 0.88886 0.92035 0.92905 0.92212 0.91619 0.89923 0.93800 0.94939 0.92813 0.85512 0.84542 0.85288 0.85579 0.85688 0.91036 0.90420 0.91113 0.91975 0.93831 0.89363 0.94085 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.11 1.71 5.84 -4.04 -0.02 1.69 16 3 N -0.59 -12.80 2.46 -176.70 -0.43 -13.23 16 4 C 0.24 6.52 5.16 -5.20 -0.03 6.49 16 5 C -0.52 -15.15 9.39 -34.44 -0.32 -15.47 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.53 11.56 7.61 -12.97 -0.10 11.46 16 14 O -0.54 -14.18 15.81 5.20 0.08 -14.10 16 15 C -0.18 -2.87 8.61 -37.50 -0.32 -3.20 16 16 C -0.06 -0.86 9.46 -37.15 -0.35 -1.21 16 17 C -0.02 -0.22 5.87 -105.08 -0.62 -0.83 16 18 C -0.15 -1.61 9.41 -39.09 -0.37 -1.98 16 19 C -0.08 -0.76 10.02 -39.67 -0.40 -1.15 16 20 C -0.21 -2.01 9.04 -39.32 -0.36 -2.37 16 21 C 0.13 1.48 6.68 -39.28 -0.26 1.21 16 22 O -0.31 -3.41 10.10 -24.33 -0.25 -3.66 16 23 C 0.06 0.44 5.12 37.16 0.19 0.63 16 24 C 0.06 0.40 6.32 37.16 0.23 0.63 16 25 O -0.38 -3.50 10.67 -40.09 -0.43 -3.93 16 26 C 0.03 0.18 11.01 101.05 1.11 1.29 16 27 C -0.13 -1.68 9.73 -38.95 -0.38 -2.06 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.89 6.09 -51.93 -0.32 0.57 16 32 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 33 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 34 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.13 1.65 4.22 -52.49 -0.22 1.43 16 37 H 0.14 2.20 7.52 -52.49 -0.39 1.81 16 38 H 0.13 1.25 6.16 -52.49 -0.32 0.93 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.87 6.28 -52.48 -0.33 0.54 16 41 H 0.07 0.49 7.66 -51.93 -0.40 0.09 16 42 H 0.08 0.39 7.66 -51.93 -0.40 -0.01 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 45 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 48 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 404.64 15.07 6.10 6.10 Total: -1.00 -35.88 404.64 -8.29 -44.18 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.38 Total: -1.24 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.70 Total: -5.14 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.30 Total: -39.42 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.59 Total: -21.69 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.88 -8.29 -44.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275690923.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.957 kcal (2) G-P(sol) polarization free energy of solvation -35.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds