Wall clock time and date at job start Tue Mar 31 2020 18:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.46496 * 119.99759 * 90.00495 * 3 2 1 5 5 C 1.50695 * 109.47390 * 89.99689 * 4 3 2 6 6 H 1.08001 * 120.00425 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99997 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99547 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47560 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46717 * 120.00344 * 9 7 5 12 12 H 1.48502 * 109.46830 * 239.99808 * 9 7 5 13 13 C 1.34771 * 120.00084 * 270.00167 * 3 2 1 14 14 O 1.21693 * 119.99953 * 180.02562 * 13 3 2 15 15 C 1.46429 * 119.99982 * 359.97438 * 13 3 2 16 16 C 1.34807 * 119.99875 * 179.97438 * 15 13 3 17 17 C 1.47213 * 120.00131 * 180.02562 * 16 15 13 18 18 C 1.39874 * 120.14150 * 359.97438 * 17 16 15 19 19 C 1.37904 * 119.93829 * 180.02562 * 18 17 16 20 20 C 1.38329 * 120.23003 * 359.97355 * 19 18 17 21 21 C 1.38861 * 120.29098 * 0.02930 * 20 19 18 22 22 O 1.35916 * 119.96872 * 180.02562 * 21 20 19 23 23 C 1.42898 * 116.99865 * 359.97438 * 22 21 20 24 24 C 1.53000 * 109.46898 * 179.97438 * 23 22 21 25 25 O 1.42899 * 109.47231 * 64.99909 * 24 23 22 26 26 C 1.42901 * 114.00185 * 180.02562 * 25 24 23 27 27 C 1.38419 * 120.05917 * 359.71616 * 21 20 19 28 28 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 29 29 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 30 30 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 32 32 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 33 33 H 1.09001 * 109.47057 * 210.00204 * 4 3 2 34 34 H 1.08999 * 109.47333 * 329.99764 * 4 3 2 35 35 H 0.96998 * 119.99696 * 179.97438 * 8 7 5 36 36 H 1.08001 * 120.00307 * 0.02562 * 15 13 3 37 37 H 1.08002 * 120.00343 * 359.97438 * 16 15 13 38 38 H 1.08002 * 120.03201 * 0.02562 * 18 17 16 39 39 H 1.08001 * 119.88223 * 179.97438 * 19 18 17 40 40 H 1.08006 * 119.85333 * 180.02562 * 20 19 18 41 41 H 1.08994 * 109.47354 * 300.00267 * 23 22 21 42 42 H 1.09003 * 109.47131 * 60.00368 * 23 22 21 43 43 H 1.08992 * 109.47461 * 185.00334 * 24 23 22 44 44 H 1.09009 * 109.47218 * 305.00166 * 24 23 22 45 45 H 1.08997 * 109.47207 * 60.00246 * 26 25 24 46 46 H 1.09004 * 109.47094 * 180.02562 * 26 25 24 47 47 H 1.09001 * 109.47161 * 299.99747 * 26 25 24 48 48 H 1.07993 * 120.12080 * 180.30310 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6858 1.8350 1.7037 6 1 4.3430 1.2309 1.0957 7 6 4.1495 2.3904 2.8775 8 7 3.3495 3.1264 3.6176 9 14 5.9139 2.0973 3.4162 10 1 6.6012 1.2412 2.4164 11 1 6.6211 3.3987 3.5240 12 1 5.9219 1.4188 4.7371 13 6 2.2429 2.0166 -1.1671 14 8 2.6490 3.1638 -1.1671 15 6 1.9994 1.3262 -2.4353 16 6 2.2236 1.9619 -3.6027 17 6 1.9782 1.2680 -4.8777 18 6 1.5130 -0.0511 -4.8812 19 6 1.2851 -0.6973 -6.0780 20 6 1.5144 -0.0453 -7.2762 21 6 1.9763 1.2642 -7.2838 22 8 2.1989 1.8988 -8.4650 23 6 1.9370 1.1582 -9.6587 24 6 2.2428 2.0308 -10.8776 25 8 3.6407 2.3251 -10.9142 26 6 4.0345 3.1400 -12.0201 27 6 2.2041 1.9260 -6.0896 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.0956 3.1410 1.1385 34 1 1.5818 1.6877 2.0284 35 1 3.6756 3.5168 4.4435 36 1 1.6394 0.3079 -2.4353 37 1 2.5824 2.9806 -3.6027 38 1 1.3325 -0.5631 -3.9475 39 1 0.9263 -1.7160 -6.0796 40 1 1.3334 -0.5571 -8.2099 41 1 2.5674 0.2693 -9.6804 42 1 0.8886 0.8607 -9.6791 43 1 1.9597 1.4987 -11.7857 44 1 1.6775 2.9605 -10.8100 45 1 3.5064 4.0925 -11.9757 46 1 5.1090 3.3175 -11.9762 47 1 3.7884 2.6311 -12.9521 48 1 2.5586 2.9461 -6.0944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275690923.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:31 Heat of formation + Delta-G solvation = -97.843114 kcal Electronic energy + Delta-G solvation = -27169.872545 eV Core-core repulsion = 23190.027837 eV Total energy + Delta-G solvation = -3979.844708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.18790 -40.69207 -39.14550 -38.23259 -36.99874 -35.07512 -34.59174 -32.36977 -31.65521 -31.01217 -30.09409 -28.98057 -27.27857 -26.00086 -24.71065 -24.23410 -23.60027 -23.12707 -21.32753 -19.61165 -18.98235 -18.62658 -18.06625 -17.81972 -17.42484 -17.21462 -16.65714 -16.48235 -16.24057 -16.16737 -15.91491 -15.63598 -15.32092 -14.69545 -14.56696 -14.39365 -14.33712 -14.17972 -13.83009 -13.56923 -13.28146 -13.27386 -13.24472 -13.04765 -12.71261 -12.62176 -12.53789 -12.41829 -12.31980 -12.18085 -11.95141 -11.88325 -11.74542 -11.69583 -11.14146 -10.70302 -10.67803 -10.65563 -9.59395 -9.37951 -9.05643 -8.22844 -6.37963 -0.46347 0.48379 1.03530 1.35357 1.38147 1.50260 2.15226 2.29059 2.44241 2.46790 2.80178 2.91749 3.06074 3.54934 3.79129 3.92995 3.94044 4.06411 4.11138 4.15954 4.24864 4.33068 4.34871 4.36608 4.44464 4.50679 4.51445 4.53291 4.58842 4.65841 4.74064 4.85836 4.90504 4.94394 5.00431 5.05229 5.11464 5.18634 5.27440 5.37442 5.41821 5.47028 5.58006 5.65758 5.78160 5.86706 6.05922 6.17830 6.46155 6.69681 6.79139 7.26912 7.46073 8.84221 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.001950 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.229447 B =14354.813800 C =15406.041100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 N -0.596 5.596 4 C 0.260 3.740 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.928 5.928 9 Si 0.969 3.031 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.522 3.478 14 O -0.606 6.606 15 C -0.189 4.189 16 C -0.033 4.033 17 C -0.039 4.039 18 C -0.143 4.143 19 C -0.075 4.075 20 C -0.197 4.197 21 C 0.117 3.883 22 O -0.331 6.331 23 C 0.052 3.948 24 C 0.057 3.943 25 O -0.419 6.419 26 C 0.026 3.974 27 C -0.153 4.153 28 H 0.037 0.963 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.074 0.926 33 H -0.005 1.005 34 H 0.025 0.975 35 H 0.267 0.733 36 H 0.167 0.833 37 H 0.113 0.887 38 H 0.148 0.852 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.060 0.940 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.060 0.940 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.716 -12.406 -31.623 34.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.325 5.325 4 C 0.139 3.861 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.794 3.206 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.192 1.192 13 C 0.314 3.686 14 O -0.490 6.490 15 C -0.209 4.209 16 C -0.053 4.053 17 C -0.039 4.039 18 C -0.161 4.161 19 C -0.093 4.093 20 C -0.216 4.216 21 C 0.072 3.928 22 O -0.245 6.245 23 C -0.023 4.023 24 C -0.019 4.019 25 O -0.339 6.339 26 C -0.070 4.070 27 C -0.171 4.171 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.013 0.987 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.184 0.816 37 H 0.131 0.869 38 H 0.165 0.835 39 H 0.181 0.819 40 H 0.175 0.825 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.078 0.922 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.344 -11.624 -31.320 34.205 hybrid contribution 0.793 0.783 0.647 1.289 sum -6.551 -10.841 -30.673 33.186 Atomic orbital electron populations 1.22170 0.94380 1.03689 1.01671 1.21834 0.95449 0.81146 1.04074 1.48181 1.63028 1.15186 1.06090 1.18736 0.95459 0.91529 0.80376 1.21742 0.97827 1.32037 1.06542 0.92910 1.25886 1.02533 0.94443 0.96412 1.70060 1.37713 1.34188 1.14804 0.85342 0.78848 0.78016 0.78437 1.19179 1.20772 1.19164 1.19046 0.77827 0.86000 0.85758 1.90733 1.49145 1.20731 1.88436 1.23103 1.05565 1.02112 0.90166 1.22301 0.92918 0.98881 0.91202 1.18706 0.99712 0.94720 0.90782 1.21620 1.00929 0.93322 1.00227 1.21268 0.96529 1.00919 0.90585 1.21698 1.05188 0.93637 1.01046 1.18944 0.96317 0.92161 0.85407 1.86123 1.83135 1.42462 1.12792 1.23178 1.02499 0.95222 0.81353 1.22782 0.82435 0.99741 0.96922 1.87928 1.24798 1.71716 1.49475 1.22908 1.01568 0.93990 0.88554 1.20657 1.05550 1.01029 0.89910 0.94371 0.92241 0.88192 0.87936 0.90720 0.98658 0.95676 0.92382 0.81551 0.86910 0.83469 0.81901 0.82538 0.90500 0.87735 0.88014 0.92142 0.93508 0.89306 0.92176 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 10.24 71.98 0.74 -3.34 16 2 C 0.10 3.04 5.84 86.38 0.50 3.55 16 3 N -0.60 -26.68 2.46 -831.18 -2.04 -28.72 16 4 C 0.26 14.69 5.16 85.63 0.44 15.13 16 5 C -0.54 -32.51 9.39 25.60 0.24 -32.27 16 6 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 9 Si 0.97 46.26 29.54 68.60 2.03 48.28 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.52 23.66 7.61 86.38 0.66 24.32 16 14 O -0.61 -34.05 15.81 -4.33 -0.07 -34.11 16 15 C -0.19 -6.07 8.61 23.62 0.20 -5.87 16 16 C -0.03 -1.02 9.46 23.84 0.23 -0.79 16 17 C -0.04 -0.97 5.87 -20.16 -0.12 -1.09 16 18 C -0.14 -2.68 9.41 22.59 0.21 -2.47 16 19 C -0.08 -1.07 10.02 22.21 0.22 -0.85 16 20 C -0.20 -3.01 9.04 22.44 0.20 -2.81 16 21 C 0.12 2.50 6.68 22.46 0.15 2.65 16 22 O -0.33 -7.00 10.10 -87.96 -0.89 -7.89 16 23 C 0.05 0.62 5.12 71.98 0.37 0.99 16 24 C 0.06 0.63 6.32 71.98 0.45 1.08 16 25 O -0.42 -7.26 10.67 -144.34 -1.54 -8.80 16 26 C 0.03 0.27 11.01 113.37 1.25 1.52 16 27 C -0.15 -3.85 9.73 22.68 0.22 -3.63 16 28 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.10 2.46 6.09 -2.38 -0.01 2.45 16 32 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 33 H 0.00 -0.31 7.42 -2.39 -0.02 -0.32 16 34 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 35 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.17 3.84 4.22 -2.91 -0.01 3.82 16 37 H 0.11 3.97 7.52 -2.91 -0.02 3.95 16 38 H 0.15 2.16 6.16 -2.91 -0.02 2.14 16 39 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.16 1.36 6.28 -2.91 -0.02 1.34 16 41 H 0.08 0.83 7.66 -2.39 -0.02 0.81 16 42 H 0.10 0.65 7.66 -2.39 -0.02 0.63 16 43 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.12 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -84.51 404.64 5.15 -79.36 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.95 Total: 12.21 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 6.43 Total: -3.06 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -1.76 Total: -86.00 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -2.50 Total: -50.80 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -84.51 5.15 -79.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275690923.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.484 kcal (2) G-P(sol) polarization free energy of solvation -84.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds