Wall clock time and date at job start Tue Mar 31 2020 18:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47050 * 2 1 4 4 C 1.46506 * 119.99902 * 95.27091 * 3 2 1 5 5 C 1.52998 * 109.47170 * 84.78721 * 4 3 2 6 6 H 1.09002 * 109.47108 * 305.30273 * 5 4 3 7 7 C 1.53002 * 109.47241 * 185.30588 * 5 4 3 8 8 O 1.42902 * 109.47173 * 65.30260 * 5 4 3 9 9 C 1.42896 * 113.99857 * 209.99881 * 8 5 4 10 10 C 1.34767 * 120.00008 * 275.26931 * 3 2 1 11 11 O 1.21723 * 119.99908 * 179.97438 * 10 3 2 12 12 C 1.46261 * 120.00142 * 0.02562 * 10 3 2 13 13 C 1.35021 * 120.00148 * 180.02562 * 12 10 3 14 14 C 1.46956 * 120.00254 * 179.97438 * 13 12 10 15 15 C 1.40024 * 120.09668 * 359.72288 * 14 13 12 16 16 C 1.37606 * 119.89545 * 179.69314 * 15 14 13 17 17 C 1.39169 * 120.09924 * 0.60554 * 16 15 14 18 18 O 1.35576 * 119.90148 * 179.69624 * 17 16 15 19 19 C 1.34773 * 117.00270 * 175.00455 * 18 17 16 20 20 H 1.08005 * 120.00381 * 5.04964 * 19 18 17 21 21 C 1.38719 * 119.99850 * 185.04471 * 19 18 17 22 22 N 1.31507 * 120.00333 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99967 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47081 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47247 * 119.99936 * 23 21 19 26 26 H 1.48504 * 109.46999 * 239.99946 * 23 21 19 27 27 C 1.39177 * 120.20597 * 359.67162 * 17 16 15 28 28 C 1.37596 * 120.09787 * 0.02562 * 27 17 16 29 29 H 1.09001 * 109.47315 * 304.96809 * 1 2 3 30 30 H 1.08997 * 109.47122 * 64.97026 * 1 2 3 31 31 H 1.08996 * 109.47188 * 184.97050 * 1 2 3 32 32 H 1.08999 * 109.47153 * 240.00100 * 2 1 3 33 33 H 1.09005 * 109.47322 * 119.99514 * 2 1 3 34 34 H 1.08996 * 109.47020 * 324.78383 * 4 3 2 35 35 H 1.08998 * 109.47058 * 204.78591 * 4 3 2 36 36 H 1.09000 * 109.47282 * 59.99855 * 7 5 4 37 37 H 1.08992 * 109.47053 * 180.02562 * 7 5 4 38 38 H 1.09002 * 109.46812 * 299.99866 * 7 5 4 39 39 H 1.09000 * 109.47591 * 300.00314 * 9 8 5 40 40 H 1.09009 * 109.47339 * 60.00416 * 9 8 5 41 41 H 1.08996 * 109.47328 * 180.02562 * 9 8 5 42 42 H 1.07993 * 119.99500 * 359.97438 * 12 10 3 43 43 H 1.08005 * 120.00000 * 359.97438 * 13 12 10 44 44 H 1.08002 * 120.05435 * 0.02562 * 15 14 13 45 45 H 1.07995 * 119.94937 * 180.27686 * 16 15 14 46 46 H 0.96993 * 120.00026 * 179.97438 * 22 21 19 47 47 H 1.07998 * 119.95071 * 180.02562 * 27 17 16 48 48 H 1.08004 * 120.04947 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3724 2.0330 1.2634 5 6 3.8121 1.6741 1.6365 6 1 3.9229 0.5899 1.6559 7 6 4.1384 2.2448 3.0181 8 8 4.7068 2.2271 0.6692 9 6 5.9042 1.4693 0.4850 10 6 2.1419 2.0523 -1.1622 11 8 2.5471 3.2001 -1.1621 12 6 1.7879 1.4018 -2.4235 13 6 1.9122 2.0739 -3.5879 14 6 1.5571 1.4202 -4.8552 15 6 1.0951 0.0983 -4.8581 16 6 0.7578 -0.5077 -6.0466 17 6 0.8871 0.1869 -7.2456 18 8 0.5594 -0.4162 -8.4148 19 6 0.6079 0.3412 -9.5285 20 1 0.9759 1.3553 -9.4765 21 6 0.1852 -0.1818 -10.7418 22 7 -0.2632 -1.4165 -10.8053 23 14 0.2531 0.8676 -12.2858 24 1 0.7924 2.2095 -11.9488 25 1 1.1343 0.2169 -13.2883 26 1 -1.1142 1.0109 -12.8473 27 6 1.3513 1.4990 -7.2481 28 6 1.6851 2.1151 -6.0640 29 1 -0.3634 0.5890 0.8421 30 1 -0.3633 0.4348 -0.9311 31 1 -0.3633 -1.0238 0.0890 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 1.6978 1.6930 2.0492 35 1 2.2846 3.1137 1.1518 36 1 3.4559 1.8230 3.7559 37 1 5.1641 1.9895 3.2837 38 1 4.0276 3.3291 2.9987 39 1 6.4465 1.4116 1.4288 40 1 5.6499 0.4637 0.1500 41 1 6.5299 1.9548 -0.2640 42 1 1.4279 0.3836 -2.4234 43 1 2.2726 3.0921 -3.5879 44 1 0.9986 -0.4430 -3.9285 45 1 0.3972 -1.5257 -6.0494 46 1 -0.5591 -1.7820 -11.6536 47 1 1.4497 2.0343 -8.1809 48 1 2.0449 3.1335 -6.0668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291502512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:37 Heat of formation + Delta-G solvation = -68.411998 kcal Electronic energy + Delta-G solvation = -27841.722020 eV Core-core repulsion = 23863.153541 eV Total energy + Delta-G solvation = -3978.568479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.98477 -39.14449 -38.17636 -36.86667 -35.88050 -33.33779 -32.61846 -32.14382 -30.40905 -30.34402 -28.46412 -26.99605 -26.32414 -25.54752 -23.75824 -22.90139 -22.12449 -21.49424 -20.10228 -18.62285 -17.97136 -17.42893 -17.08824 -16.63556 -16.35610 -15.74590 -15.06508 -14.91280 -14.77205 -14.44815 -14.32923 -13.99708 -13.81267 -13.80332 -13.43690 -13.21401 -13.00970 -12.93250 -12.71975 -12.60812 -12.52785 -12.26590 -12.04496 -11.80972 -11.74939 -11.67453 -11.56890 -11.27555 -11.13308 -11.03981 -10.94469 -10.62350 -10.51581 -9.89445 -9.55111 -9.53199 -9.46762 -8.85340 -8.63309 -8.36006 -7.07969 -6.63615 -4.18487 1.14375 2.15333 2.61980 3.01495 3.04719 3.05913 3.11451 3.56724 3.70884 3.83536 4.53416 4.59162 4.66686 4.75778 4.84768 4.87844 4.94338 5.06092 5.07005 5.09717 5.18415 5.20576 5.22727 5.32043 5.34326 5.48148 5.52329 5.55196 5.56303 5.60327 5.68237 5.71082 5.75478 5.85575 6.01613 6.04071 6.15844 6.41606 6.49957 6.59792 6.68221 6.82297 6.94452 7.06948 7.15825 7.26218 7.30838 7.52712 7.66283 7.82077 8.47328 8.81528 9.48921 10.53241 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024664 B = 0.001987 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.992714 B =14086.536175 C =14560.953459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.107 3.893 3 N -0.616 5.616 4 C 0.119 3.881 5 C 0.068 3.932 6 H 0.058 0.942 7 C -0.173 4.173 8 O -0.365 6.365 9 C 0.032 3.968 10 C 0.560 3.440 11 O -0.542 6.542 12 C -0.279 4.279 13 C 0.033 3.967 14 C -0.195 4.195 15 C -0.044 4.044 16 C -0.199 4.199 17 C 0.166 3.834 18 O -0.164 6.164 19 C -0.392 4.392 20 H 0.098 0.902 21 C 0.041 3.959 22 N -0.853 5.853 23 Si 0.944 3.056 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.242 4.242 28 C -0.036 4.036 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.084 0.916 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.273 0.727 47 H 0.131 0.869 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 2.131 23.191 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.016 4.016 3 N -0.349 5.349 4 C -0.005 4.005 5 C 0.008 3.992 6 H 0.076 0.924 7 C -0.231 4.231 8 O -0.283 6.283 9 C -0.064 4.064 10 C 0.353 3.647 11 O -0.421 6.421 12 C -0.300 4.300 13 C 0.013 3.987 14 C -0.196 4.196 15 C -0.062 4.062 16 C -0.219 4.219 17 C 0.110 3.890 18 O -0.065 6.065 19 C -0.468 4.468 20 H 0.115 0.885 21 C -0.165 4.165 22 N -0.486 5.486 23 Si 0.769 3.231 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.261 4.261 28 C -0.054 4.054 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.102 0.898 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.083 0.917 47 H 0.149 0.851 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.355 2.490 22.815 23.567 hybrid contribution 0.150 0.032 -0.558 0.578 sum 5.504 2.522 22.257 23.066 Atomic orbital electron populations 1.22249 0.95771 1.02212 1.02979 1.21527 0.94531 0.82636 1.02914 1.47722 1.66759 1.14103 1.06340 1.21512 0.92774 1.00457 0.85730 1.22587 0.90974 0.96999 0.88590 0.92413 1.22233 1.01899 1.02639 0.96335 1.88110 1.30087 1.50077 1.60058 1.22744 0.87443 0.95903 1.00348 1.18317 0.76756 0.85649 0.83938 1.90773 1.46331 1.17905 1.87082 1.22579 1.13819 1.01802 0.91815 1.22286 0.87579 0.97895 0.90925 1.18472 1.13347 0.95554 0.92238 1.20859 0.95341 0.93480 0.96535 1.20141 1.10486 1.01126 0.90108 1.19606 0.91240 0.90930 0.87224 1.83904 1.72702 1.37719 1.12167 1.21516 1.44267 0.97441 0.83580 0.88512 1.25391 0.95689 0.96621 0.98810 1.70019 1.37817 1.13688 1.27061 0.85588 0.78532 0.79243 0.79777 1.18864 1.19945 1.19934 1.21103 1.09852 0.96362 0.98767 1.20990 0.94921 0.98105 0.91430 0.92515 0.91682 0.91558 0.90125 0.90878 0.89822 0.88810 0.91615 0.92359 0.91476 0.94580 0.94370 0.89774 0.85883 0.86028 0.86569 0.86180 0.91690 0.85139 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.10 37.16 0.38 -0.97 16 2 C 0.11 0.88 5.77 -4.04 -0.02 0.86 16 3 N -0.62 -6.95 2.45 -175.38 -0.43 -7.38 16 4 C 0.12 1.16 5.12 -4.04 -0.02 1.14 16 5 C 0.07 0.63 2.96 -26.73 -0.08 0.55 16 6 H 0.06 0.47 7.79 -51.93 -0.40 0.07 16 7 C -0.17 -1.22 9.53 37.16 0.35 -0.87 16 8 O -0.37 -4.58 9.84 -35.23 -0.35 -4.93 16 9 C 0.03 0.31 10.82 101.05 1.09 1.40 16 10 C 0.56 8.38 7.32 -13.04 -0.10 8.29 16 11 O -0.54 -10.02 15.51 5.17 0.08 -9.94 16 12 C -0.28 -4.01 8.16 -37.50 -0.31 -4.32 16 13 C 0.03 0.52 9.45 -37.20 -0.35 0.17 16 14 C -0.20 -3.39 5.87 -105.03 -0.62 -4.01 16 15 C -0.04 -0.76 9.40 -39.14 -0.37 -1.12 16 16 C -0.20 -4.00 9.97 -39.47 -0.39 -4.40 16 17 C 0.17 3.84 6.66 -38.89 -0.26 3.58 16 18 O -0.16 -4.46 9.74 0.75 0.01 -4.46 16 19 C -0.39 -10.48 9.48 30.91 0.29 -10.19 16 20 H 0.10 2.39 5.18 -52.48 -0.27 2.11 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.85 -23.95 13.67 55.48 0.76 -23.20 16 23 Si 0.94 19.65 29.55 -169.99 -5.02 14.63 16 24 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 C -0.24 -5.06 9.15 -39.47 -0.36 -5.42 16 28 C -0.04 -0.66 9.78 -39.15 -0.38 -1.04 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.62 7.53 -51.93 -0.39 0.22 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.68 6.41 -51.93 -0.33 0.35 16 33 H 0.07 0.45 8.03 -51.93 -0.42 0.03 16 34 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 35 H 0.09 1.13 7.27 -51.93 -0.38 0.76 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.04 0.28 7.87 -51.93 -0.41 -0.13 16 40 H 0.04 0.34 8.09 -51.92 -0.42 -0.08 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.12 1.54 4.08 -52.49 -0.21 1.32 16 43 H 0.12 1.95 7.52 -52.48 -0.39 1.55 16 44 H 0.12 1.63 6.16 -52.49 -0.32 1.31 16 45 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.13 2.71 5.61 -52.49 -0.29 2.42 16 48 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 399.77 15.07 6.02 6.02 Total: -1.00 -32.22 399.77 -7.34 -39.56 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.17 Total: 5.03 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -1.24 Total: -15.36 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.33 Total: -30.57 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.26 Total: -19.32 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.22 -7.34 -39.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291502512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.848 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds