Wall clock time and date at job start Tue Mar 31 2020 18:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47050 * 2 1 4 4 C 1.46506 * 119.99902 * 95.27091 * 3 2 1 5 5 C 1.52998 * 109.47170 * 84.78721 * 4 3 2 6 6 H 1.09002 * 109.47108 * 305.30273 * 5 4 3 7 7 C 1.53002 * 109.47241 * 185.30588 * 5 4 3 8 8 O 1.42902 * 109.47173 * 65.30260 * 5 4 3 9 9 C 1.42896 * 113.99857 * 209.99881 * 8 5 4 10 10 C 1.34767 * 120.00008 * 275.26931 * 3 2 1 11 11 O 1.21723 * 119.99908 * 179.97438 * 10 3 2 12 12 C 1.46261 * 120.00142 * 0.02562 * 10 3 2 13 13 C 1.35021 * 120.00148 * 180.02562 * 12 10 3 14 14 C 1.46956 * 120.00254 * 179.97438 * 13 12 10 15 15 C 1.40024 * 120.09668 * 359.72288 * 14 13 12 16 16 C 1.37606 * 119.89545 * 179.69314 * 15 14 13 17 17 C 1.39169 * 120.09924 * 0.60554 * 16 15 14 18 18 O 1.35576 * 119.90148 * 179.69624 * 17 16 15 19 19 C 1.34773 * 117.00270 * 175.00455 * 18 17 16 20 20 H 1.08005 * 120.00381 * 5.04964 * 19 18 17 21 21 C 1.38719 * 119.99850 * 185.04471 * 19 18 17 22 22 N 1.31507 * 120.00333 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99967 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47081 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47247 * 119.99936 * 23 21 19 26 26 H 1.48504 * 109.46999 * 239.99946 * 23 21 19 27 27 C 1.39177 * 120.20597 * 359.67162 * 17 16 15 28 28 C 1.37596 * 120.09787 * 0.02562 * 27 17 16 29 29 H 1.09001 * 109.47315 * 304.96809 * 1 2 3 30 30 H 1.08997 * 109.47122 * 64.97026 * 1 2 3 31 31 H 1.08996 * 109.47188 * 184.97050 * 1 2 3 32 32 H 1.08999 * 109.47153 * 240.00100 * 2 1 3 33 33 H 1.09005 * 109.47322 * 119.99514 * 2 1 3 34 34 H 1.08996 * 109.47020 * 324.78383 * 4 3 2 35 35 H 1.08998 * 109.47058 * 204.78591 * 4 3 2 36 36 H 1.09000 * 109.47282 * 59.99855 * 7 5 4 37 37 H 1.08992 * 109.47053 * 180.02562 * 7 5 4 38 38 H 1.09002 * 109.46812 * 299.99866 * 7 5 4 39 39 H 1.09000 * 109.47591 * 300.00314 * 9 8 5 40 40 H 1.09009 * 109.47339 * 60.00416 * 9 8 5 41 41 H 1.08996 * 109.47328 * 180.02562 * 9 8 5 42 42 H 1.07993 * 119.99500 * 359.97438 * 12 10 3 43 43 H 1.08005 * 120.00000 * 359.97438 * 13 12 10 44 44 H 1.08002 * 120.05435 * 0.02562 * 15 14 13 45 45 H 1.07995 * 119.94937 * 180.27686 * 16 15 14 46 46 H 0.96993 * 120.00026 * 179.97438 * 22 21 19 47 47 H 1.07998 * 119.95071 * 180.02562 * 27 17 16 48 48 H 1.08004 * 120.04947 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3724 2.0330 1.2634 5 6 3.8121 1.6741 1.6365 6 1 3.9229 0.5899 1.6559 7 6 4.1384 2.2448 3.0181 8 8 4.7068 2.2271 0.6692 9 6 5.9042 1.4693 0.4850 10 6 2.1419 2.0523 -1.1622 11 8 2.5471 3.2001 -1.1621 12 6 1.7879 1.4018 -2.4235 13 6 1.9122 2.0739 -3.5879 14 6 1.5571 1.4202 -4.8552 15 6 1.0951 0.0983 -4.8581 16 6 0.7578 -0.5077 -6.0466 17 6 0.8871 0.1869 -7.2456 18 8 0.5594 -0.4162 -8.4148 19 6 0.6079 0.3412 -9.5285 20 1 0.9759 1.3553 -9.4765 21 6 0.1852 -0.1818 -10.7418 22 7 -0.2632 -1.4165 -10.8053 23 14 0.2531 0.8676 -12.2858 24 1 0.7924 2.2095 -11.9488 25 1 1.1343 0.2169 -13.2883 26 1 -1.1142 1.0109 -12.8473 27 6 1.3513 1.4990 -7.2481 28 6 1.6851 2.1151 -6.0640 29 1 -0.3634 0.5890 0.8421 30 1 -0.3633 0.4348 -0.9311 31 1 -0.3633 -1.0238 0.0890 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 1.6978 1.6930 2.0492 35 1 2.2846 3.1137 1.1518 36 1 3.4559 1.8230 3.7559 37 1 5.1641 1.9895 3.2837 38 1 4.0276 3.3291 2.9987 39 1 6.4465 1.4116 1.4288 40 1 5.6499 0.4637 0.1500 41 1 6.5299 1.9548 -0.2640 42 1 1.4279 0.3836 -2.4234 43 1 2.2726 3.0921 -3.5879 44 1 0.9986 -0.4430 -3.9285 45 1 0.3972 -1.5257 -6.0494 46 1 -0.5591 -1.7820 -11.6536 47 1 1.4497 2.0343 -8.1809 48 1 2.0449 3.1335 -6.0668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291502512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:36 Heat of formation + Delta-G solvation = -87.489079 kcal Electronic energy + Delta-G solvation = -27842.549264 eV Core-core repulsion = 23863.153541 eV Total energy + Delta-G solvation = -3979.395723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.07502 -40.74834 -39.07674 -38.46035 -36.86724 -34.77936 -34.08036 -33.23212 -31.96957 -31.08066 -29.86522 -27.84745 -27.53144 -27.00415 -24.71663 -24.04582 -23.58004 -22.47900 -21.37066 -20.10883 -19.30793 -18.82238 -18.44562 -17.52412 -17.32087 -16.59622 -16.46403 -16.32803 -15.96508 -15.79089 -15.62244 -15.48925 -15.15185 -14.76169 -14.66425 -14.53903 -14.10976 -13.93916 -13.66781 -13.58927 -13.35942 -13.31977 -13.22988 -13.13609 -12.92971 -12.73047 -12.55764 -12.48432 -12.37825 -12.15422 -12.10780 -11.95692 -11.66877 -11.21005 -11.10778 -10.81722 -10.57666 -10.55555 -9.89467 -9.56476 -8.66746 -8.52292 -6.18138 -0.22549 0.58172 1.15983 1.35829 1.45275 1.53640 2.11659 2.15101 2.43561 2.86253 2.91135 3.18078 3.41951 3.66383 3.92278 3.93403 4.06303 4.08788 4.13480 4.24603 4.25438 4.32382 4.40748 4.43164 4.46055 4.52350 4.52774 4.62579 4.67021 4.76389 4.82719 4.86891 4.94123 4.94889 5.01031 5.02543 5.05843 5.19320 5.28018 5.28419 5.33133 5.42926 5.56968 5.63529 5.74404 5.81770 5.97596 6.10062 6.35187 6.51889 6.92294 7.34327 7.69415 8.69975 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024664 B = 0.001987 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.992714 B =14086.536175 C =14560.953459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.099 3.901 3 N -0.607 5.607 4 C 0.114 3.886 5 C 0.065 3.935 6 H 0.075 0.925 7 C -0.167 4.167 8 O -0.403 6.403 9 C 0.030 3.970 10 C 0.550 3.450 11 O -0.583 6.583 12 C -0.244 4.244 13 C 0.010 3.990 14 C -0.168 4.168 15 C -0.037 4.037 16 C -0.204 4.204 17 C 0.130 3.870 18 O -0.219 6.219 19 C -0.416 4.416 20 H 0.105 0.895 21 C -0.019 4.019 22 N -0.913 5.913 23 Si 1.018 2.982 24 H -0.252 1.252 25 H -0.268 1.268 26 H -0.268 1.268 27 C -0.248 4.248 28 C -0.042 4.042 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.149 0.851 43 H 0.120 0.880 44 H 0.157 0.843 45 H 0.125 0.875 46 H 0.275 0.725 47 H 0.124 0.876 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.888 2.240 26.890 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.338 5.338 4 C -0.008 4.008 5 C 0.006 3.994 6 H 0.093 0.907 7 C -0.225 4.225 8 O -0.322 6.322 9 C -0.066 4.066 10 C 0.342 3.658 11 O -0.465 6.465 12 C -0.264 4.264 13 C -0.010 4.010 14 C -0.169 4.169 15 C -0.055 4.055 16 C -0.224 4.224 17 C 0.078 3.922 18 O -0.124 6.124 19 C -0.492 4.492 20 H 0.122 0.878 21 C -0.218 4.218 22 N -0.550 5.550 23 Si 0.838 3.162 24 H -0.175 1.175 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.267 4.267 28 C -0.060 4.060 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.166 0.834 43 H 0.138 0.862 44 H 0.175 0.825 45 H 0.143 0.857 46 H 0.084 0.916 47 H 0.142 0.858 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.895 2.598 26.611 27.379 hybrid contribution 0.092 0.089 -1.036 1.044 sum 5.988 2.686 25.574 26.403 Atomic orbital electron populations 1.22225 0.95171 1.03401 1.02115 1.21833 0.94939 0.80807 1.04674 1.47823 1.65070 1.15105 1.05786 1.21721 0.94328 0.98927 0.85846 1.22745 0.89841 0.97928 0.88889 0.90732 1.22192 1.02862 1.01806 0.95666 1.88071 1.31322 1.51542 1.61283 1.22819 0.86861 0.95697 1.01254 1.18479 0.76780 0.85348 0.85153 1.90768 1.48208 1.19736 1.87786 1.22895 1.09938 1.02325 0.91259 1.22156 0.89972 0.98265 0.90588 1.18763 1.10111 0.95358 0.92644 1.21234 0.93843 0.93441 0.96978 1.20410 1.10339 1.01486 0.90126 1.20170 0.92382 0.92335 0.87336 1.83884 1.76232 1.39023 1.13258 1.21926 1.44967 0.98019 0.84245 0.87772 1.26602 0.95160 0.97956 1.02042 1.70148 1.40953 1.15924 1.27982 0.84529 0.78762 0.77781 0.75174 1.17491 1.19275 1.19305 1.21189 1.09969 0.95811 0.99723 1.21294 0.94556 0.99453 0.90695 0.92230 0.93546 0.89574 0.89873 0.87770 0.86190 0.91650 0.89127 0.91918 0.92824 0.92726 0.93822 0.90439 0.83384 0.86235 0.82515 0.85745 0.91592 0.85786 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.10 71.98 0.73 -1.19 16 2 C 0.10 1.16 5.77 86.38 0.50 1.66 16 3 N -0.61 -11.62 2.45 -827.00 -2.02 -13.65 16 4 C 0.11 1.91 5.12 86.38 0.44 2.35 16 5 C 0.06 1.00 2.96 30.59 0.09 1.09 16 6 H 0.07 0.90 7.79 -2.39 -0.02 0.88 16 7 C -0.17 -1.87 9.53 71.98 0.69 -1.19 16 8 O -0.40 -9.44 9.84 -148.98 -1.47 -10.90 16 9 C 0.03 0.52 10.82 113.37 1.23 1.74 16 10 C 0.55 15.11 7.32 86.33 0.63 15.74 16 11 O -0.58 -20.95 15.51 -4.42 -0.07 -21.02 16 12 C -0.24 -6.18 8.16 23.62 0.19 -5.99 16 13 C 0.01 0.29 9.45 23.82 0.23 0.52 16 14 C -0.17 -5.44 5.87 -20.13 -0.12 -5.56 16 15 C -0.04 -1.19 9.40 22.55 0.21 -0.98 16 16 C -0.20 -8.18 9.97 22.34 0.22 -7.96 16 17 C 0.13 6.23 6.66 22.72 0.15 6.38 16 18 O -0.22 -12.71 9.74 -20.25 -0.20 -12.90 16 19 C -0.42 -23.50 9.48 67.93 0.64 -22.86 16 20 H 0.11 5.41 5.18 -2.91 -0.02 5.40 16 21 C -0.02 -1.04 5.49 84.86 0.47 -0.58 16 22 N -0.91 -54.40 13.67 21.62 0.30 -54.10 16 23 Si 1.02 41.76 29.55 68.60 2.03 43.79 16 24 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 25 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 26 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 27 C -0.25 -10.57 9.15 22.34 0.20 -10.37 16 28 C -0.04 -1.47 9.78 22.55 0.22 -1.25 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.70 7.53 -2.39 -0.02 0.68 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.97 6.41 -2.39 -0.02 0.96 16 33 H 0.10 0.67 8.03 -2.38 -0.02 0.65 16 34 H 0.12 1.10 8.11 -2.39 -0.02 1.08 16 35 H 0.06 1.50 7.27 -2.39 -0.02 1.49 16 36 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.06 0.66 7.87 -2.39 -0.02 0.64 16 38 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.05 0.71 7.87 -2.39 -0.02 0.69 16 40 H 0.04 0.68 8.09 -2.38 -0.02 0.66 16 41 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.15 2.96 4.08 -2.91 -0.01 2.95 16 43 H 0.12 3.62 7.52 -2.91 -0.02 3.60 16 44 H 0.16 3.67 6.16 -2.91 -0.02 3.65 16 45 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 46 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 47 H 0.12 5.36 5.61 -2.91 -0.02 5.34 16 48 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -76.45 399.77 6.25 -70.20 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.96 Total: 27.01 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 6.72 Total: -28.43 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -1.73 Total: -67.75 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.73 Total: -44.82 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -76.45 6.25 -70.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291502512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.289 kcal (2) G-P(sol) polarization free energy of solvation -76.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds