Wall clock time and date at job start Tue Mar 31 2020 18:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47228 * 2 1 4 4 C 1.42897 * 114.00126 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.85023 * 21.68866 * 4 3 2 6 6 C 1.53777 * 113.61420 * 250.49098 * 4 3 2 7 7 C 1.53781 * 87.08220 * 220.01889 * 6 4 3 8 8 H 1.09003 * 113.61067 * 270.79808 * 7 6 4 9 9 N 1.46494 * 113.61521 * 139.98345 * 7 6 4 10 10 C 1.34776 * 120.00331 * 104.49988 * 9 7 6 11 11 O 1.21280 * 120.00033 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00281 * 179.97438 * 10 9 7 13 13 C 1.52995 * 109.47006 * 180.02562 * 12 10 9 14 14 C 1.50708 * 109.46781 * 180.02562 * 13 12 10 15 15 H 1.07991 * 120.00165 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99966 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00256 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47261 * 269.99699 * 18 16 14 20 20 H 1.48503 * 109.47684 * 149.99564 * 18 16 14 21 21 H 1.48504 * 109.47203 * 29.99769 * 18 16 14 22 22 C 1.53780 * 113.61553 * 152.99167 * 4 3 2 23 23 H 1.09004 * 113.60856 * 25.43588 * 22 4 3 24 24 O 1.42890 * 113.61716 * 254.52923 * 22 4 3 25 25 C 1.35900 * 117.00161 * 104.67696 * 24 22 4 26 26 C 1.38729 * 120.06068 * 173.79622 * 25 24 22 27 27 C 1.38140 * 119.94937 * 179.74607 * 26 25 24 28 28 C 1.38272 * 120.05338 * 0.50805 * 27 26 25 29 29 C 1.38267 * 120.11008 * 359.76676 * 28 27 26 30 30 C 1.38151 * 120.05460 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.46911 * 300.00302 * 1 2 3 32 32 H 1.09000 * 109.47198 * 59.99971 * 1 2 3 33 33 H 1.08998 * 109.47425 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47387 * 239.99628 * 2 1 3 35 35 H 1.09005 * 109.47179 * 119.99287 * 2 1 3 36 36 H 1.09008 * 113.61118 * 105.46759 * 6 4 3 37 37 H 1.09002 * 113.61533 * 334.57260 * 6 4 3 38 38 H 0.97002 * 119.99777 * 284.50805 * 9 7 6 39 39 H 1.08997 * 109.46612 * 60.00356 * 12 10 9 40 40 H 1.09000 * 109.47106 * 300.00593 * 12 10 9 41 41 H 1.08997 * 109.47529 * 60.00447 * 13 12 10 42 42 H 1.09000 * 109.47288 * 300.00011 * 13 12 10 43 43 H 0.96999 * 120.00224 * 0.02562 * 17 16 14 44 44 H 1.08002 * 120.02667 * 359.97438 * 26 25 24 45 45 H 1.07998 * 119.97636 * 180.23135 * 27 26 25 46 46 H 1.07996 * 119.94794 * 179.75052 * 28 27 26 47 47 H 1.07999 * 119.97594 * 179.97438 * 29 28 27 48 48 H 1.07998 * 120.02543 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9264 0.5632 -0.3722 6 6 4.0083 1.9777 1.3274 7 6 4.9919 2.8077 0.4856 8 1 5.9157 2.2804 0.2475 9 7 5.2252 4.1540 1.0137 10 6 6.3766 4.4363 1.6548 11 8 7.2198 3.5757 1.7942 12 6 6.6169 5.8215 2.1976 13 6 7.9887 5.8736 2.8731 14 6 8.2286 7.2587 3.4164 15 1 7.4781 8.0251 3.2919 16 6 9.4069 7.5477 4.0715 17 7 10.3212 6.6145 4.2227 18 14 9.7042 9.2642 4.7455 19 1 10.3666 10.0955 3.7085 20 1 10.5762 9.1812 5.9447 21 1 8.4060 9.8809 5.1194 22 6 3.9456 2.7603 -0.6405 23 1 3.2271 3.5793 -0.6036 24 8 4.5108 2.5743 -1.9396 25 6 3.7619 2.9731 -3.0012 26 6 4.2978 2.9421 -4.2804 27 6 3.5328 3.3430 -5.3585 28 6 2.2374 3.7850 -5.1622 29 6 1.7029 3.8223 -3.8876 30 6 2.4621 3.4173 -2.8068 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 4.4902 1.2038 1.9250 37 1 3.3071 2.5826 1.9022 38 1 4.5510 4.8424 0.9020 39 1 5.8434 6.0655 2.9257 40 1 6.5870 6.5421 1.3804 41 1 8.7619 5.6297 2.1447 42 1 8.0189 5.1529 3.6903 43 1 10.1668 5.7230 3.8730 44 1 5.3111 2.6012 -4.4338 45 1 3.9482 3.3155 -6.3550 46 1 1.6422 4.1019 -6.0058 47 1 0.6910 4.1683 -3.7367 48 1 2.0440 3.4462 -1.8114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293349025.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:23 Heat of formation + Delta-G solvation = -85.943629 kcal Electronic energy + Delta-G solvation = -28133.547350 eV Core-core repulsion = 24154.218643 eV Total energy + Delta-G solvation = -3979.328708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.07024 -39.59196 -38.74826 -37.49120 -36.20831 -33.78004 -33.09875 -31.29678 -31.25162 -30.65061 -30.00489 -25.93873 -25.76891 -24.08731 -23.17148 -22.91323 -22.33956 -21.73410 -20.44111 -19.74535 -18.70761 -17.47782 -17.14702 -16.76533 -16.18435 -16.04644 -15.93656 -15.49189 -15.43755 -14.92544 -14.64184 -14.37899 -13.99607 -13.70029 -13.68015 -13.49419 -13.34999 -12.93720 -12.90295 -12.62929 -12.35896 -12.15158 -12.05194 -11.84850 -11.78589 -11.62159 -11.52314 -11.29032 -11.05689 -10.92175 -10.81229 -10.12730 -10.11583 -9.95409 -9.91731 -9.33991 -9.25758 -8.98680 -8.53220 -8.42961 -8.27680 -6.31396 -4.01547 1.08529 1.18299 2.65199 3.06340 3.29369 3.45404 3.49542 3.53208 3.59263 3.65142 3.99149 4.09687 4.38395 4.45396 4.57822 4.58329 4.66368 4.68920 4.75969 4.87731 4.97280 4.99510 5.09369 5.12636 5.24968 5.27838 5.36490 5.43270 5.46315 5.50370 5.53878 5.64648 5.72093 5.74527 5.87922 6.07590 6.09632 6.10092 6.15502 6.27380 6.48551 6.55059 6.72819 6.80222 7.18321 7.51786 7.57014 7.70538 8.19867 8.50167 8.61748 8.92690 9.72119 11.09666 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.002389 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.955884 B =11718.341820 C =13136.081134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.372 6.372 4 C 0.055 3.945 5 H 0.101 0.899 6 C -0.165 4.165 7 C 0.141 3.859 8 H 0.126 0.874 9 N -0.730 5.730 10 C 0.514 3.486 11 O -0.533 6.533 12 C -0.123 4.123 13 C 0.024 3.976 14 C -0.608 4.608 15 H 0.049 0.951 16 C 0.015 3.985 17 N -0.911 5.911 18 Si 1.073 2.927 19 H -0.288 1.288 20 H -0.284 1.284 21 H -0.289 1.289 22 C 0.054 3.946 23 H 0.112 0.888 24 O -0.297 6.297 25 C 0.128 3.872 26 C -0.153 4.153 27 C -0.084 4.084 28 C -0.161 4.161 29 C -0.081 4.081 30 C -0.202 4.202 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.400 0.600 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.272 0.728 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.170 -12.040 -16.455 30.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.291 6.291 4 C -0.005 4.005 5 H 0.119 0.881 6 C -0.204 4.204 7 C 0.034 3.966 8 H 0.144 0.856 9 N -0.384 5.384 10 C 0.303 3.697 11 O -0.408 6.408 12 C -0.163 4.163 13 C -0.014 4.014 14 C -0.647 4.647 15 H 0.068 0.932 16 C -0.190 4.190 17 N -0.547 5.547 18 Si 0.901 3.099 19 H -0.215 1.215 20 H -0.210 1.210 21 H -0.215 1.215 22 C -0.003 4.003 23 H 0.129 0.871 24 O -0.210 6.210 25 C 0.083 3.917 26 C -0.171 4.171 27 C -0.102 4.102 28 C -0.179 4.179 29 C -0.100 4.100 30 C -0.221 4.221 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.234 0.766 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.083 0.917 44 H 0.148 0.852 45 H 0.146 0.854 46 H 0.140 0.860 47 H 0.141 0.859 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.355 -11.658 -15.509 28.852 hybrid contribution -1.616 -0.807 -0.912 2.024 sum -22.971 -12.465 -16.421 30.866 Atomic orbital electron populations 1.21748 0.93626 1.02337 1.03150 1.22538 0.95634 0.83578 1.00265 1.87904 1.19738 1.26853 1.94563 1.24058 0.81890 0.98190 0.96312 0.88122 1.23739 0.98892 1.00897 0.96912 1.22206 0.98157 0.85545 0.90678 0.85594 1.46072 1.20877 1.11711 1.59691 1.21615 0.79966 0.91864 0.76282 1.90662 1.44072 1.49450 1.56615 1.21738 1.03160 0.90528 1.00864 1.19023 0.89566 0.97456 0.95308 1.22054 1.05532 0.96326 1.40763 0.93220 1.25853 0.92687 1.05244 0.95183 1.70706 1.35630 1.04473 1.43916 0.83500 0.75525 0.74164 0.76694 1.21475 1.20993 1.21519 1.24990 0.96468 0.98478 0.80404 0.87055 1.86201 1.43792 1.77951 1.13090 1.19082 0.90232 0.94595 0.87764 1.20503 1.01203 1.05523 0.89892 1.20969 0.93958 0.97006 0.98234 1.21072 0.96154 1.03490 0.97192 1.20957 0.99378 0.97410 0.92216 1.21367 0.94226 1.05882 1.00600 0.91756 0.91866 0.91062 0.93280 0.93071 0.89234 0.88183 0.76611 0.89937 0.89952 0.96699 0.96696 0.91698 0.85220 0.85448 0.86033 0.85887 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.43 6.51 37.16 0.24 0.67 16 3 O -0.37 -3.58 10.35 -35.23 -0.36 -3.94 16 4 C 0.05 0.53 4.12 -25.92 -0.11 0.42 16 5 H 0.10 0.92 7.89 -51.93 -0.41 0.51 16 6 C -0.17 -1.72 7.71 -25.92 -0.20 -1.92 16 7 C 0.14 1.76 4.03 -67.12 -0.27 1.49 16 8 H 0.13 1.83 7.53 -51.93 -0.39 1.44 16 9 N -0.73 -10.12 5.37 -53.02 -0.28 -10.40 16 10 C 0.51 9.76 7.83 -10.99 -0.09 9.68 16 11 O -0.53 -12.31 15.62 5.56 0.09 -12.22 16 12 C -0.12 -2.51 5.64 -27.88 -0.16 -2.66 16 13 C 0.02 0.65 3.57 -27.88 -0.10 0.55 16 14 C -0.61 -17.59 9.11 -34.44 -0.31 -17.90 16 15 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 16 C 0.01 0.43 5.46 -17.82 -0.10 0.34 16 17 N -0.91 -28.97 13.65 55.43 0.76 -28.22 16 18 Si 1.07 25.66 29.90 -169.99 -5.08 20.57 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.05 0.58 3.21 -25.92 -0.08 0.50 16 23 H 0.11 1.09 6.01 -51.93 -0.31 0.78 16 24 O -0.30 -3.67 10.15 -19.42 -0.20 -3.86 16 25 C 0.13 1.48 6.68 -39.22 -0.26 1.22 16 26 C -0.15 -1.60 9.99 -39.44 -0.39 -2.00 16 27 C -0.08 -0.73 10.04 -39.61 -0.40 -1.13 16 28 C -0.16 -1.34 10.04 -39.56 -0.40 -1.74 16 29 C -0.08 -0.72 10.04 -39.60 -0.40 -1.12 16 30 C -0.20 -2.06 9.01 -39.43 -0.36 -2.42 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 4.37 8.70 -40.82 -0.36 4.02 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 41 H 0.01 0.43 7.96 -51.93 -0.41 0.02 16 42 H 0.01 0.43 7.97 -51.93 -0.41 0.01 16 43 H 0.27 8.78 7.22 -40.82 -0.29 8.49 16 44 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 45 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 48 H 0.13 1.27 5.95 -52.49 -0.31 0.96 16 LS Contribution 402.12 15.07 6.06 6.06 Total: -1.00 -35.46 402.12 -9.62 -45.08 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.60 Total: 3.54 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -2.99 Total: -16.60 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.47 Total: -38.62 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.48 Total: -20.03 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.46 -9.62 -45.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293349025.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.861 kcal (2) G-P(sol) polarization free energy of solvation -35.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds