Wall clock time and date at job start Tue Mar 31 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47228 * 2 1 4 4 C 1.42897 * 114.00126 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.85023 * 21.68866 * 4 3 2 6 6 C 1.53777 * 113.61420 * 250.49098 * 4 3 2 7 7 C 1.53781 * 87.08220 * 220.01889 * 6 4 3 8 8 H 1.09003 * 113.61067 * 270.79808 * 7 6 4 9 9 N 1.46494 * 113.61521 * 139.98345 * 7 6 4 10 10 C 1.34776 * 120.00331 * 104.49988 * 9 7 6 11 11 O 1.21280 * 120.00033 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00281 * 179.97438 * 10 9 7 13 13 C 1.52995 * 109.47006 * 180.02562 * 12 10 9 14 14 C 1.50708 * 109.46781 * 180.02562 * 13 12 10 15 15 H 1.07991 * 120.00165 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99966 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00256 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47261 * 269.99699 * 18 16 14 20 20 H 1.48503 * 109.47684 * 149.99564 * 18 16 14 21 21 H 1.48504 * 109.47203 * 29.99769 * 18 16 14 22 22 C 1.53780 * 113.61553 * 152.99167 * 4 3 2 23 23 H 1.09004 * 113.60856 * 25.43588 * 22 4 3 24 24 O 1.42890 * 113.61716 * 254.52923 * 22 4 3 25 25 C 1.35900 * 117.00161 * 104.67696 * 24 22 4 26 26 C 1.38729 * 120.06068 * 173.79622 * 25 24 22 27 27 C 1.38140 * 119.94937 * 179.74607 * 26 25 24 28 28 C 1.38272 * 120.05338 * 0.50805 * 27 26 25 29 29 C 1.38267 * 120.11008 * 359.76676 * 28 27 26 30 30 C 1.38151 * 120.05460 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.46911 * 300.00302 * 1 2 3 32 32 H 1.09000 * 109.47198 * 59.99971 * 1 2 3 33 33 H 1.08998 * 109.47425 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47387 * 239.99628 * 2 1 3 35 35 H 1.09005 * 109.47179 * 119.99287 * 2 1 3 36 36 H 1.09008 * 113.61118 * 105.46759 * 6 4 3 37 37 H 1.09002 * 113.61533 * 334.57260 * 6 4 3 38 38 H 0.97002 * 119.99777 * 284.50805 * 9 7 6 39 39 H 1.08997 * 109.46612 * 60.00356 * 12 10 9 40 40 H 1.09000 * 109.47106 * 300.00593 * 12 10 9 41 41 H 1.08997 * 109.47529 * 60.00447 * 13 12 10 42 42 H 1.09000 * 109.47288 * 300.00011 * 13 12 10 43 43 H 0.96999 * 120.00224 * 0.02562 * 17 16 14 44 44 H 1.08002 * 120.02667 * 359.97438 * 26 25 24 45 45 H 1.07998 * 119.97636 * 180.23135 * 27 26 25 46 46 H 1.07996 * 119.94794 * 179.75052 * 28 27 26 47 47 H 1.07999 * 119.97594 * 179.97438 * 29 28 27 48 48 H 1.07998 * 120.02543 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9264 0.5632 -0.3722 6 6 4.0083 1.9777 1.3274 7 6 4.9919 2.8077 0.4856 8 1 5.9157 2.2804 0.2475 9 7 5.2252 4.1540 1.0137 10 6 6.3766 4.4363 1.6548 11 8 7.2198 3.5757 1.7942 12 6 6.6169 5.8215 2.1976 13 6 7.9887 5.8736 2.8731 14 6 8.2286 7.2587 3.4164 15 1 7.4781 8.0251 3.2919 16 6 9.4069 7.5477 4.0715 17 7 10.3212 6.6145 4.2227 18 14 9.7042 9.2642 4.7455 19 1 10.3666 10.0955 3.7085 20 1 10.5762 9.1812 5.9447 21 1 8.4060 9.8809 5.1194 22 6 3.9456 2.7603 -0.6405 23 1 3.2271 3.5793 -0.6036 24 8 4.5108 2.5743 -1.9396 25 6 3.7619 2.9731 -3.0012 26 6 4.2978 2.9421 -4.2804 27 6 3.5328 3.3430 -5.3585 28 6 2.2374 3.7850 -5.1622 29 6 1.7029 3.8223 -3.8876 30 6 2.4621 3.4173 -2.8068 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 4.4902 1.2038 1.9250 37 1 3.3071 2.5826 1.9022 38 1 4.5510 4.8424 0.9020 39 1 5.8434 6.0655 2.9257 40 1 6.5870 6.5421 1.3804 41 1 8.7619 5.6297 2.1447 42 1 8.0189 5.1529 3.6903 43 1 10.1668 5.7230 3.8730 44 1 5.3111 2.6012 -4.4338 45 1 3.9482 3.3155 -6.3550 46 1 1.6422 4.1019 -6.0058 47 1 0.6910 4.1683 -3.7367 48 1 2.0440 3.4462 -1.8114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293349025.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:22 Heat of formation + Delta-G solvation = -108.998592 kcal Electronic energy + Delta-G solvation = -28134.547088 eV Core-core repulsion = 24154.218643 eV Total energy + Delta-G solvation = -3980.328446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.98953 -40.71306 -39.83384 -38.24713 -37.17028 -35.93720 -34.36626 -32.75753 -31.95309 -31.76747 -30.73923 -27.60405 -26.76304 -25.48170 -23.93442 -23.63606 -23.53220 -22.99540 -21.64049 -20.95418 -19.56237 -19.03495 -18.37582 -17.95195 -17.32589 -16.97517 -16.77842 -16.52603 -16.46156 -16.26454 -15.62511 -15.44893 -15.29334 -15.06167 -14.64047 -14.61495 -14.37194 -14.14901 -13.93006 -13.62610 -13.57647 -13.49866 -13.13785 -13.02894 -12.68177 -12.55169 -12.49217 -12.26444 -12.14815 -12.06097 -12.02594 -11.86455 -11.83539 -11.68724 -11.01574 -10.68133 -10.66373 -10.56045 -10.20570 -9.96287 -9.19977 -8.69840 -6.41654 0.38220 0.45553 1.52488 1.54046 1.64671 1.73731 1.81494 2.32069 2.59278 2.66960 2.84620 3.08991 3.16671 3.25320 3.54345 3.55456 3.84839 3.91421 3.98040 4.09239 4.15110 4.20655 4.30015 4.30540 4.33842 4.38803 4.46593 4.48366 4.52730 4.55319 4.70847 4.74972 4.81408 4.88473 4.96765 5.01392 5.07348 5.24718 5.26035 5.34067 5.36546 5.37859 5.47688 5.59131 5.82913 5.93137 6.10600 6.17227 6.39393 6.43209 6.51829 7.17879 7.44278 8.70184 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.002389 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.955884 B =11718.341820 C =13136.081134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.379 6.379 4 C 0.066 3.934 5 H 0.104 0.896 6 C -0.156 4.156 7 C 0.128 3.872 8 H 0.101 0.899 9 N -0.705 5.705 10 C 0.517 3.483 11 O -0.584 6.584 12 C -0.113 4.113 13 C 0.026 3.974 14 C -0.618 4.618 15 H 0.067 0.933 16 C -0.046 4.046 17 N -0.941 5.941 18 Si 1.127 2.873 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.260 1.260 22 C 0.063 3.937 23 H 0.124 0.876 24 O -0.317 6.317 25 C 0.103 3.897 26 C -0.173 4.173 27 C -0.086 4.086 28 C -0.160 4.160 29 C -0.085 4.085 30 C -0.210 4.210 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.418 0.582 39 H 0.108 0.892 40 H 0.103 0.897 41 H -0.022 1.022 42 H -0.019 1.019 43 H 0.252 0.748 44 H 0.127 0.873 45 H 0.151 0.849 46 H 0.148 0.852 47 H 0.146 0.854 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.341 -10.621 -17.536 33.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.298 6.298 4 C 0.007 3.993 5 H 0.122 0.878 6 C -0.195 4.195 7 C 0.022 3.978 8 H 0.119 0.881 9 N -0.358 5.358 10 C 0.306 3.694 11 O -0.463 6.463 12 C -0.153 4.153 13 C -0.011 4.011 14 C -0.656 4.656 15 H 0.085 0.915 16 C -0.243 4.243 17 N -0.578 5.578 18 Si 0.947 3.053 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.184 1.184 22 C 0.006 3.994 23 H 0.142 0.858 24 O -0.231 6.231 25 C 0.058 3.942 26 C -0.191 4.191 27 C -0.103 4.103 28 C -0.178 4.178 29 C -0.103 4.103 30 C -0.228 4.228 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.255 0.745 39 H 0.126 0.874 40 H 0.121 0.879 41 H -0.003 1.003 42 H 0.000 1.000 43 H 0.061 0.939 44 H 0.145 0.855 45 H 0.168 0.832 46 H 0.166 0.834 47 H 0.164 0.836 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.613 -10.244 -16.635 31.424 hybrid contribution -0.710 -1.311 -0.687 1.642 sum -25.324 -11.555 -17.321 32.785 Atomic orbital electron populations 1.21753 0.92495 1.03421 1.02857 1.22742 0.96569 0.82682 1.00784 1.87887 1.19166 1.28234 1.94525 1.23859 0.82332 0.97832 0.95281 0.87778 1.23686 0.98117 1.00467 0.97197 1.22314 0.98144 0.84583 0.92758 0.88088 1.45742 1.19428 1.12985 1.57690 1.21303 0.80768 0.90824 0.76535 1.90651 1.46137 1.50588 1.58966 1.21527 0.99838 0.92186 1.01757 1.18867 0.92550 0.95938 0.93784 1.22521 1.05847 0.97270 1.39936 0.91462 1.27673 0.92684 1.08750 0.95195 1.70869 1.36961 1.04199 1.45752 0.82844 0.76881 0.69335 0.76279 1.19738 1.21181 1.18420 1.24911 0.95417 0.99544 0.79559 0.85821 1.86162 1.44729 1.78491 1.13717 1.19342 0.91026 0.96031 0.87758 1.20720 1.01635 1.06407 0.90353 1.21297 0.94167 0.96118 0.98752 1.21453 0.96098 1.02341 0.97944 1.21303 1.00301 0.96700 0.92033 1.21478 0.93851 1.06120 1.01354 0.91988 0.92159 0.89337 0.92952 0.92411 0.89255 0.87269 0.74469 0.87434 0.87872 1.00335 1.00046 0.93890 0.85493 0.83165 0.83392 0.83591 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.05 0.65 6.51 71.98 0.47 1.12 16 3 O -0.38 -6.71 10.35 -148.98 -1.54 -8.25 16 4 C 0.07 1.23 4.12 31.12 0.13 1.36 16 5 H 0.10 1.86 7.89 -2.38 -0.02 1.84 16 6 C -0.16 -3.13 7.71 31.12 0.24 -2.89 16 7 C 0.13 3.22 4.03 45.52 0.18 3.40 16 8 H 0.10 3.11 7.53 -2.39 -0.02 3.10 16 9 N -0.71 -19.13 5.37 -440.05 -2.36 -21.50 16 10 C 0.52 19.94 7.83 87.66 0.69 20.63 16 11 O -0.58 -28.38 15.62 -3.03 -0.05 -28.43 16 12 C -0.11 -4.58 5.64 29.85 0.17 -4.42 16 13 C 0.03 1.46 3.57 29.85 0.11 1.57 16 14 C -0.62 -35.84 9.11 25.60 0.23 -35.60 16 15 H 0.07 3.60 7.74 -2.92 -0.02 3.57 16 16 C -0.05 -2.78 5.46 84.65 0.46 -2.32 16 17 N -0.94 -61.76 13.65 21.45 0.29 -61.47 16 18 Si 1.13 50.78 29.90 68.60 2.05 52.83 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 C 0.06 1.31 3.21 31.12 0.10 1.41 16 23 H 0.12 2.24 6.01 -2.38 -0.01 2.23 16 24 O -0.32 -7.90 10.15 -92.42 -0.94 -8.84 16 25 C 0.10 2.33 6.68 22.51 0.15 2.48 16 26 C -0.17 -3.57 9.99 22.36 0.22 -3.35 16 27 C -0.09 -1.35 10.04 22.25 0.22 -1.13 16 28 C -0.16 -2.25 10.04 22.28 0.22 -2.03 16 29 C -0.09 -1.30 10.04 22.26 0.22 -1.08 16 30 C -0.21 -3.98 9.01 22.37 0.20 -3.78 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.42 8.33 8.70 -92.71 -0.81 7.52 16 39 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 40 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 41 H -0.02 -1.36 7.96 -2.39 -0.02 -1.37 16 42 H -0.02 -1.16 7.97 -2.39 -0.02 -1.18 16 43 H 0.25 17.20 7.22 -92.71 -0.67 16.53 16 44 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 45 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 46 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 47 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 48 H 0.14 2.39 5.95 -2.91 -0.02 2.37 16 Total: -1.00 -80.34 402.12 2.46 -77.87 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.25 Total: 23.22 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 4.76 Total: -25.44 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -2.07 Total: -82.96 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -2.53 Total: -45.52 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.05 Total: 52.83 kcal Total: -80.34 2.46 -77.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293349025.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.124 kcal (2) G-P(sol) polarization free energy of solvation -80.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds