Wall clock time and date at job start Tue Mar 31 2020 17:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00481 * 2 1 4 4 O 1.20827 * 119.99509 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00186 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.46898 * 299.99719 * 5 3 2 7 7 C 1.52995 * 109.47134 * 60.00267 * 5 3 2 8 8 C 1.53007 * 109.46957 * 180.02562 * 5 3 2 9 9 N 1.46495 * 109.46698 * 175.00062 * 8 5 3 10 10 C 1.46500 * 119.99921 * 269.99176 * 9 8 5 11 11 C 1.34781 * 120.00373 * 90.00010 * 9 8 5 12 12 O 1.21281 * 119.99713 * 359.97438 * 11 9 8 13 13 C 1.50698 * 120.00309 * 179.97438 * 11 9 8 14 14 C 1.52996 * 109.47423 * 180.02562 * 13 11 9 15 15 H 1.09001 * 109.46880 * 304.99733 * 14 13 11 16 16 C 1.50700 * 109.47192 * 64.99628 * 14 13 11 17 17 H 1.07995 * 120.00176 * 26.94691 * 16 14 13 18 18 C 1.37882 * 119.99981 * 206.94849 * 16 14 13 19 19 N 1.31510 * 119.99694 * 186.62704 * 18 16 14 20 20 Si 1.86803 * 120.00009 * 6.89692 * 18 16 14 21 21 H 1.48500 * 109.47154 * 274.25854 * 20 18 16 22 22 H 1.48501 * 109.46864 * 34.26178 * 20 18 16 23 23 H 1.48500 * 109.46926 * 154.26094 * 20 18 16 24 24 C 1.50690 * 109.47411 * 184.99925 * 14 13 11 25 25 C 1.38240 * 120.00045 * 297.92187 * 24 14 13 26 26 C 1.38235 * 120.00079 * 179.78817 * 25 24 14 27 27 C 1.38239 * 120.00150 * 0.43906 * 26 25 24 28 28 C 1.38234 * 119.99524 * 359.81168 * 27 26 25 29 29 C 1.38236 * 120.00572 * 359.97438 * 28 27 26 30 30 H 1.08993 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46225 * 299.99939 * 1 2 3 32 32 H 1.09001 * 109.47378 * 59.99551 * 1 2 3 33 33 H 1.09008 * 109.46971 * 180.02562 * 7 5 3 34 34 H 1.09002 * 109.47047 * 299.99311 * 7 5 3 35 35 H 1.08994 * 109.47675 * 59.99928 * 7 5 3 36 36 H 1.08994 * 109.47396 * 54.99554 * 8 5 3 37 37 H 1.09005 * 109.46615 * 294.99399 * 8 5 3 38 38 H 1.08994 * 109.47862 * 270.00573 * 10 9 8 39 39 H 1.09001 * 109.47228 * 30.00925 * 10 9 8 40 40 H 1.09006 * 109.47174 * 150.00338 * 10 9 8 41 41 H 1.09000 * 109.47248 * 59.99362 * 13 11 9 42 42 H 1.09005 * 109.46978 * 299.99835 * 13 11 9 43 43 H 0.97003 * 120.00093 * 180.27269 * 19 18 16 44 44 H 1.07993 * 119.99717 * 359.97438 * 25 24 14 45 45 H 1.08001 * 119.99891 * 180.27355 * 26 25 24 46 46 H 1.08000 * 120.00114 * 179.83323 * 27 26 25 47 47 H 1.08001 * 119.99684 * 179.97438 * 28 27 26 48 48 H 1.07999 * 119.99996 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9564 0.7805 0.8891 7 6 4.1129 0.5815 -1.2502 8 6 4.0003 2.7420 0.0002 9 7 5.4582 2.8199 0.1200 10 6 6.0817 2.8896 1.4439 11 6 6.2260 2.8277 -0.9877 12 8 5.7099 2.7697 -2.0837 13 6 7.7258 2.9085 -0.8645 14 6 8.3534 2.9014 -2.2598 15 1 8.0090 2.0249 -2.8086 16 6 7.9463 4.1494 -3.0000 17 1 7.6987 5.0461 -2.4514 18 6 7.8901 4.1465 -4.3776 19 7 7.6628 5.2662 -5.0288 20 14 8.1292 2.5506 -5.3188 21 1 9.5795 2.3160 -5.5351 22 1 7.5566 1.4249 -4.5377 23 1 7.4414 2.6425 -6.6317 24 6 9.8545 2.8583 -2.1353 25 6 10.5263 3.8929 -1.5115 26 6 11.9030 3.8512 -1.3934 27 6 12.6087 2.7793 -1.9071 28 6 11.9373 1.7472 -2.5355 29 6 10.5602 1.7867 -2.6497 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 5.2015 0.6381 -1.2503 34 1 3.8039 -0.4638 -1.2502 35 1 3.7229 1.0757 -2.1399 36 1 3.5384 3.2570 0.8424 37 1 3.6865 3.2141 -0.9309 38 1 6.1839 3.9327 1.7430 39 1 5.4586 2.3636 2.1671 40 1 7.0667 2.4242 1.4066 41 1 8.0904 2.0520 -0.2973 42 1 7.9989 3.8289 -0.3483 43 1 7.6193 5.2635 -5.9979 44 1 9.9754 4.7323 -1.1138 45 1 12.4275 4.6575 -0.9021 46 1 13.6845 2.7480 -1.8172 47 1 12.4887 0.9099 -2.9372 48 1 10.0358 0.9805 -3.1410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356102511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:46 Heat of formation + Delta-G solvation = -95.326401 kcal Electronic energy + Delta-G solvation = -29345.418065 eV Core-core repulsion = 25365.682490 eV Total energy + Delta-G solvation = -3979.735575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -40.75065 -39.53117 -38.48609 -36.76541 -35.61963 -34.10330 -33.36627 -31.63279 -30.21689 -29.17127 -28.03733 -27.22256 -26.44124 -25.39819 -23.54098 -22.44984 -21.83750 -20.49435 -19.65063 -18.48092 -17.67907 -17.04149 -16.93974 -16.59018 -16.45146 -15.87264 -15.41567 -15.12658 -14.58301 -14.27428 -14.21849 -13.87111 -13.59757 -13.24080 -13.07587 -12.88331 -12.71728 -12.63631 -12.58611 -12.37817 -12.25583 -12.11014 -12.02538 -11.83905 -11.70264 -11.29459 -11.12310 -11.05155 -10.95250 -10.80224 -10.50482 -10.40944 -10.34507 -9.88483 -9.60416 -9.15190 -8.93509 -8.46181 -8.33449 -8.21704 -7.82446 -5.97966 -3.93904 2.08642 2.09553 2.14183 2.49824 3.34941 3.41275 3.45208 3.47686 3.49376 4.51603 4.56157 4.56942 4.78382 4.86754 4.89865 4.97909 5.15456 5.17950 5.22696 5.32507 5.41895 5.48925 5.51416 5.55634 5.68036 5.72038 5.75757 5.86140 5.89068 5.92023 5.99678 6.04605 6.13346 6.21846 6.23310 6.32202 6.41600 6.55234 6.67954 6.78225 6.84187 7.03756 7.13697 7.25594 7.58507 7.61705 7.71045 7.80733 7.82253 8.53495 8.90523 9.01882 9.66276 11.15221 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.003348 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.390927 B = 8360.941940 C = 9133.228597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.470 3.530 4 O -0.507 6.507 5 C -0.097 4.097 6 H 0.106 0.894 7 C -0.137 4.137 8 C 0.133 3.867 9 N -0.632 5.632 10 C 0.082 3.918 11 C 0.515 3.485 12 O -0.490 6.490 13 C -0.113 4.113 14 C 0.048 3.952 15 H 0.053 0.947 16 C -0.482 4.482 17 H 0.071 0.929 18 C 0.085 3.915 19 N -0.898 5.898 20 Si 0.867 3.133 21 H -0.275 1.275 22 H -0.261 1.261 23 H -0.292 1.292 24 C -0.039 4.039 25 C -0.101 4.101 26 C -0.126 4.126 27 C -0.149 4.149 28 C -0.124 4.124 29 C -0.139 4.139 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.262 0.738 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.185 -10.747 14.774 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.394 6.394 5 C -0.117 4.117 6 H 0.124 0.876 7 C -0.194 4.194 8 C 0.009 3.991 9 N -0.369 5.369 10 C -0.062 4.062 11 C 0.303 3.697 12 O -0.361 6.361 13 C -0.153 4.153 14 C 0.029 3.971 15 H 0.071 0.929 16 C -0.519 4.519 17 H 0.089 0.911 18 C -0.118 4.118 19 N -0.536 5.536 20 Si 0.695 3.305 21 H -0.201 1.201 22 H -0.186 1.186 23 H -0.219 1.219 24 C -0.040 4.040 25 C -0.119 4.119 26 C -0.144 4.144 27 C -0.168 4.168 28 C -0.142 4.142 29 C -0.157 4.157 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.072 0.928 44 H 0.138 0.862 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.717 -10.380 13.941 18.010 hybrid contribution -0.080 -0.631 -0.596 0.872 sum -4.797 -11.011 13.345 17.954 Atomic orbital electron populations 1.23255 0.76568 1.03552 1.02560 1.86517 1.23244 1.33649 1.84107 1.23807 0.91919 0.81230 0.71782 1.90674 1.67241 1.36289 1.45168 1.21534 0.86631 1.00782 1.02794 0.87627 1.21770 1.02695 0.99499 0.95482 1.21136 0.80869 0.92387 1.04666 1.48002 1.05556 1.76509 1.06872 1.21726 0.98807 1.01654 0.84006 1.20878 0.89895 0.75571 0.83340 1.90750 1.74453 1.45342 1.25547 1.21659 0.90758 1.01961 1.00965 1.18250 0.86425 1.00293 0.92156 0.92857 1.20587 1.44500 0.95658 0.91200 0.91080 1.24859 0.93847 0.95492 0.97568 1.69890 1.49746 1.26078 1.07900 0.86968 0.78323 0.85836 0.79359 1.20091 1.18562 1.21877 1.20778 0.98579 0.91879 0.92763 1.20953 0.93401 0.98183 0.99358 1.21059 0.94660 0.97907 1.00805 1.20859 0.98776 0.95510 1.01621 1.20954 0.94497 0.98599 1.00199 1.21056 0.94037 0.98787 1.01842 0.88206 0.91987 0.91841 0.90624 0.92170 0.91234 0.90194 0.88759 0.92801 0.91854 0.90780 0.91263 0.89709 0.92842 0.86247 0.87167 0.87407 0.87364 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.13 10.47 -39.25 -0.41 -4.54 16 3 C 0.47 6.16 7.26 36.00 0.26 6.42 16 4 O -0.51 -7.86 15.67 -18.75 -0.29 -8.15 16 5 C -0.10 -1.19 3.03 -91.77 -0.28 -1.47 16 6 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 7 C -0.14 -1.91 7.87 37.16 0.29 -1.61 16 8 C 0.13 1.87 4.35 -4.04 -0.02 1.85 16 9 N -0.63 -9.03 2.76 -181.57 -0.50 -9.53 16 10 C 0.08 0.81 10.24 59.85 0.61 1.43 16 11 C 0.51 9.57 6.01 -10.98 -0.07 9.50 16 12 O -0.49 -11.31 12.78 5.56 0.07 -11.24 16 13 C -0.11 -2.02 3.48 -27.89 -0.10 -2.12 16 14 C 0.05 1.07 1.21 -92.93 -0.11 0.96 16 15 H 0.05 1.28 4.87 -51.93 -0.25 1.02 16 16 C -0.48 -13.10 6.97 -34.44 -0.24 -13.34 16 17 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 18 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 19 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 20 Si 0.87 22.54 26.62 -169.99 -4.52 18.01 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.26 -6.55 6.29 56.52 0.36 -6.19 16 23 H -0.29 -7.70 7.11 56.52 0.40 -7.29 16 24 C -0.04 -0.81 4.52 -104.63 -0.47 -1.28 16 25 C -0.10 -1.93 8.86 -39.58 -0.35 -2.28 16 26 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 27 C -0.15 -2.41 10.05 -39.58 -0.40 -2.81 16 28 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 29 C -0.14 -2.70 9.08 -39.58 -0.36 -3.06 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 33 H 0.07 1.16 6.07 -51.92 -0.31 0.85 16 34 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 35 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 36 H 0.08 0.99 7.89 -51.93 -0.41 0.58 16 37 H 0.09 1.63 7.42 -51.93 -0.39 1.24 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 40 H 0.07 0.67 6.44 -51.93 -0.33 0.34 16 41 H 0.07 1.03 7.40 -51.93 -0.38 0.64 16 42 H 0.08 1.43 7.65 -51.93 -0.40 1.03 16 43 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 44 H 0.12 2.25 7.72 -52.49 -0.40 1.84 16 45 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 46 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 48 H 0.11 2.04 7.91 -52.49 -0.42 1.63 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -34.75 390.58 -7.59 -42.34 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.54 Total: 3.62 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.05 Total: -9.15 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.27 Total: -36.80 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.63 Total: -23.93 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.52 Total: 18.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.75 -7.59 -42.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356102511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.982 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds