Wall clock time and date at job start Tue Mar 31 2020 17:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99950 * 2 1 4 4 C 1.53002 * 109.47523 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47338 * 64.99678 * 4 3 2 6 6 C 1.37096 * 120.00212 * 270.00893 * 5 4 3 7 7 H 1.08007 * 119.99544 * 340.96667 * 6 5 4 8 8 C 1.38949 * 120.00043 * 160.97487 * 6 5 4 9 9 N 1.31408 * 119.99861 * 349.13103 * 8 6 5 10 10 Si 1.86801 * 119.99844 * 169.13629 * 8 6 5 11 11 H 1.48502 * 109.47400 * 59.99640 * 10 8 6 12 12 H 1.48497 * 109.47126 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46972 * 299.99778 * 10 8 6 14 14 C 1.34773 * 119.99886 * 90.00132 * 5 4 3 15 15 O 1.21286 * 119.99935 * 127.41436 * 14 5 4 16 16 C 1.50710 * 119.99975 * 307.41759 * 14 5 4 17 17 H 1.08994 * 109.47192 * 54.59274 * 16 14 5 18 18 C 1.52998 * 109.46798 * 294.58881 * 16 14 5 19 19 O 1.42905 * 109.46918 * 174.59216 * 16 14 5 20 20 C 1.35902 * 116.99677 * 290.89482 * 19 16 14 21 21 C 1.38746 * 120.09296 * 358.63975 * 20 19 16 22 22 C 1.38004 * 119.87636 * 179.97438 * 21 20 19 23 23 C 1.38550 * 120.29201 * 359.97438 * 22 21 20 24 24 C 1.38267 * 119.93593 * 0.03203 * 23 22 21 25 25 C 1.38408 * 119.90322 * 359.97438 * 24 23 22 26 26 C 1.51378 * 109.75077 * 180.02562 * 24 23 22 27 27 C 1.54344 * 105.17455 * 342.81355 * 26 24 23 28 28 C 1.51692 * 130.24098 * 179.85614 * 23 22 21 29 29 H 1.08996 * 109.46977 * 299.99798 * 1 2 3 30 30 H 1.09002 * 109.47283 * 59.99922 * 1 2 3 31 31 H 1.08998 * 109.46704 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47586 * 59.99905 * 3 2 1 33 33 H 1.09002 * 109.47260 * 300.00334 * 3 2 1 34 34 H 1.09009 * 109.46629 * 304.99708 * 4 3 2 35 35 H 1.08993 * 109.47375 * 185.00311 * 4 3 2 36 36 H 0.97007 * 119.99653 * 185.01398 * 9 8 6 37 37 H 1.09001 * 109.47153 * 54.33825 * 18 16 14 38 38 H 1.08998 * 109.46614 * 174.33700 * 18 16 14 39 39 H 1.08998 * 109.47204 * 294.33218 * 18 16 14 40 40 H 1.08004 * 120.06750 * 0.02562 * 21 20 19 41 41 H 1.08008 * 119.85622 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.91228 * 180.02562 * 25 24 23 43 43 H 1.08999 * 110.30284 * 223.88522 * 26 24 23 44 44 H 1.09004 * 110.29811 * 101.73505 * 26 24 23 45 45 H 1.09000 * 110.82522 * 144.58976 * 27 26 24 46 46 H 1.09000 * 110.81446 * 267.93599 * 27 26 24 47 47 H 1.08998 * 110.25533 * 78.28058 * 28 23 22 48 48 H 1.09003 * 110.49596 * 316.03514 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0969 -0.7985 -1.3369 7 1 4.1730 -1.3905 -0.4368 8 6 4.1220 -1.4182 -2.5803 9 7 3.8178 -0.7353 -3.6610 10 14 4.5880 -3.2221 -2.7156 11 1 3.6332 -4.0406 -1.9259 12 1 4.5385 -3.6407 -4.1395 13 1 5.9624 -3.4190 -2.1888 14 6 4.2615 1.3338 -2.3217 15 8 5.3269 1.2127 -2.8885 16 6 3.2573 2.3446 -2.8128 17 1 2.9749 3.0044 -1.9925 18 6 2.0155 1.6181 -3.3336 19 8 3.8351 3.1164 -3.8677 20 6 4.8343 3.9731 -3.5292 21 6 5.2316 4.0902 -2.2050 22 6 6.2471 4.9611 -1.8665 23 6 6.8724 5.7191 -2.8433 24 6 6.4782 5.6042 -4.1635 25 6 5.4599 4.7316 -4.5061 26 6 7.3087 6.5287 -5.0278 27 6 7.9469 7.5344 -4.0462 28 6 7.9943 6.7335 -2.7279 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8465 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5683 0.8411 35 1 3.9784 2.1766 0.0890 36 1 3.7643 -1.1842 -4.5193 37 1 1.6330 0.9522 -2.5601 38 1 1.2502 2.3488 -3.5951 39 1 2.2788 1.0359 -4.2167 40 1 4.7476 3.5003 -1.4407 41 1 6.5559 5.0524 -0.8355 42 1 5.1521 4.6414 -5.5374 43 1 6.6730 7.0501 -5.7433 44 1 8.0830 5.9654 -5.5487 45 1 8.9512 7.8078 -4.3699 46 1 7.3216 8.4207 -3.9386 47 1 8.9536 6.2257 -2.6287 48 1 7.8255 7.3941 -1.8774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520522108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:09 Heat of formation + Delta-G solvation = -86.542183 kcal Electronic energy + Delta-G solvation = -30402.116938 eV Core-core repulsion = 26422.762275 eV Total energy + Delta-G solvation = -3979.354663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.74957 -40.51222 -39.11642 -38.35222 -36.06341 -35.74464 -33.91365 -32.92923 -31.86489 -30.34421 -29.32382 -27.95238 -27.25609 -26.69745 -25.08226 -23.76808 -23.46066 -21.98225 -21.63791 -20.69135 -19.04343 -18.74131 -17.75439 -17.17992 -17.04983 -16.86585 -16.48191 -16.37402 -16.23846 -15.86884 -15.74643 -15.36775 -15.21374 -14.66913 -14.37556 -14.00720 -13.76007 -13.67977 -13.58215 -13.38068 -13.26404 -13.07159 -12.92251 -12.84079 -12.74952 -12.66063 -12.51860 -12.47836 -12.32113 -12.10644 -12.00237 -11.97852 -11.73537 -11.57774 -11.39757 -10.98661 -10.36172 -10.15182 -9.72518 -9.24867 -8.79416 -8.11862 -5.58477 0.38506 0.51727 1.39577 1.46201 1.50627 1.99533 2.24286 2.44708 2.79111 3.00093 3.17580 3.37933 3.58636 3.70126 3.83230 4.00788 4.04134 4.11679 4.23860 4.25070 4.36462 4.38841 4.42112 4.45734 4.51982 4.55103 4.60345 4.67683 4.68332 4.73522 4.87787 4.89972 4.91579 4.95835 4.98677 5.03538 5.06912 5.10030 5.29445 5.36005 5.42304 5.46116 5.52630 5.57553 5.69157 5.89306 6.13842 6.48952 6.51516 7.06955 7.40574 7.73330 8.15565 8.99156 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.003843 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.016256 B = 7284.504927 C = 8087.417299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.394 6.394 3 C 0.041 3.959 4 C 0.115 3.885 5 N -0.531 5.531 6 C -0.281 4.281 7 H 0.083 0.917 8 C -0.027 4.027 9 N -0.895 5.895 10 Si 0.978 3.022 11 H -0.264 1.264 12 H -0.294 1.294 13 H -0.285 1.285 14 C 0.534 3.466 15 O -0.561 6.561 16 C 0.083 3.917 17 H 0.085 0.915 18 C -0.109 4.109 19 O -0.315 6.315 20 C 0.126 3.874 21 C -0.213 4.213 22 C -0.073 4.073 23 C -0.154 4.154 24 C -0.070 4.070 25 C -0.168 4.168 26 C -0.081 4.081 27 C -0.110 4.110 28 C -0.072 4.072 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.257 0.743 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.142 0.858 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 15.756 4.798 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C -0.037 4.037 4 C -0.009 4.009 5 N -0.259 5.259 6 C -0.409 4.409 7 H 0.101 0.899 8 C -0.227 4.227 9 N -0.538 5.538 10 Si 0.805 3.195 11 H -0.189 1.189 12 H -0.220 1.220 13 H -0.212 1.212 14 C 0.324 3.676 15 O -0.438 6.438 16 C 0.023 3.977 17 H 0.103 0.897 18 C -0.166 4.166 19 O -0.228 6.228 20 C 0.081 3.919 21 C -0.232 4.232 22 C -0.091 4.091 23 C -0.154 4.154 24 C -0.070 4.070 25 C -0.186 4.186 26 C -0.118 4.118 27 C -0.147 4.147 28 C -0.109 4.109 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.131 0.869 41 H 0.159 0.841 42 H 0.141 0.859 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.502 15.470 4.109 16.014 hybrid contribution -0.410 -1.628 -0.177 1.688 sum -0.912 13.842 3.932 14.419 Atomic orbital electron populations 1.22826 0.80954 1.02898 1.00239 1.88081 1.20077 1.27889 1.95288 1.23302 0.94590 0.85232 1.00592 1.21649 0.92898 0.98184 0.88144 1.42990 1.67512 1.04960 1.10485 1.19380 1.47209 0.81341 0.93011 0.89914 1.25725 0.98879 1.02599 0.95466 1.69576 1.48504 1.36783 0.98926 0.85192 0.78321 0.79552 0.76411 1.18921 1.21996 1.21153 1.20099 0.86054 0.80796 0.80641 1.90425 1.26617 1.67672 1.59055 1.22538 0.94137 0.91440 0.89561 0.89728 1.21530 0.92852 0.99169 1.03035 1.86052 1.48077 1.51267 1.37379 1.19109 0.89244 0.89656 0.93886 1.21125 1.03239 1.03908 0.94921 1.20617 0.94047 0.94238 1.00239 1.20972 1.00198 1.00956 0.93263 1.20728 0.94055 0.95785 0.96455 1.19928 0.99820 1.00443 0.98457 1.21170 0.97732 0.95314 0.97535 1.22309 1.02322 0.97130 0.92984 1.21088 0.95099 0.94897 0.99803 0.92470 0.94493 0.89842 0.90511 0.93662 0.90364 0.89810 0.93350 0.90226 0.90711 0.92569 0.86891 0.84058 0.85880 0.89427 0.89686 0.88318 0.89909 0.90103 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.39 -14.32 10.18 -148.98 -1.52 -15.83 16 3 C 0.04 1.30 5.66 71.98 0.41 1.70 16 4 C 0.12 4.27 5.62 86.38 0.49 4.76 16 5 N -0.53 -26.18 2.46 -635.53 -1.57 -27.74 16 6 C -0.28 -15.41 9.11 84.04 0.77 -14.64 16 7 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 8 C -0.03 -1.55 5.06 84.93 0.43 -1.12 16 9 N -0.90 -53.20 8.85 21.66 0.19 -53.00 16 10 Si 0.98 46.73 29.57 68.60 2.03 48.75 16 11 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 14 C 0.53 27.76 2.25 87.66 0.20 27.96 16 15 O -0.56 -34.84 14.78 15.93 0.24 -34.60 16 16 C 0.08 3.69 1.92 29.85 0.06 3.75 16 17 H 0.09 3.20 5.87 -2.39 -0.01 3.18 16 18 C -0.11 -4.60 8.24 71.98 0.59 -4.01 16 19 O -0.31 -14.74 9.63 -73.47 -0.71 -15.44 16 20 C 0.13 5.39 5.88 22.48 0.13 5.52 16 21 C -0.21 -8.31 8.11 22.34 0.18 -8.12 16 22 C -0.07 -2.38 10.03 22.29 0.22 -2.15 16 23 C -0.15 -4.48 6.15 -19.47 -0.12 -4.60 16 24 C -0.07 -2.16 6.13 -19.60 -0.12 -2.28 16 25 C -0.17 -6.32 9.98 22.40 0.22 -6.10 16 26 C -0.08 -1.70 6.77 30.52 0.21 -1.50 16 27 C -0.11 -1.72 7.07 31.50 0.22 -1.50 16 28 C -0.07 -1.41 6.79 30.61 0.21 -1.20 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.46 4.50 -2.39 -0.01 1.45 16 34 H 0.08 2.82 8.03 -2.38 -0.02 2.80 16 35 H 0.08 2.68 7.14 -2.39 -0.02 2.66 16 36 H 0.26 15.15 8.32 -92.70 -0.77 14.38 16 37 H 0.08 3.45 6.37 -2.39 -0.02 3.44 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.06 2.77 7.01 -2.39 -0.02 2.75 16 40 H 0.11 4.41 4.59 -2.91 -0.01 4.39 16 41 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 42 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 46 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -77.55 377.92 4.97 -72.58 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.96 Total: 26.84 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 5.34 Total: -1.55 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.37 Total: -80.75 kcal Atomic # 8 Polarization: -63.89 SS G_CDS: -1.99 Total: -65.88 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Total: -77.55 4.97 -72.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520522108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.965 kcal (2) G-P(sol) polarization free energy of solvation -77.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds