Wall clock time and date at job start Tue Mar 31 2020 18:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45197 * 109.47131 * 2 1 4 4 C 1.34230 * 117.00473 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99450 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00689 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.46971 * 59.99376 * 6 4 3 8 8 N 1.46494 * 109.47500 * 179.97438 * 6 4 3 9 9 C 1.34778 * 120.00245 * 204.99998 * 8 6 4 10 10 O 1.21552 * 119.99884 * 359.97438 * 9 8 6 11 11 C 1.47888 * 120.00089 * 180.02562 * 9 8 6 12 12 C 1.39918 * 120.02372 * 359.72369 * 11 9 8 13 13 C 1.38328 * 120.35618 * 179.72035 * 12 11 9 14 14 C 1.37756 * 120.41301 * 0.55649 * 13 12 11 15 15 C 1.40753 * 120.03467 * 359.72367 * 14 13 12 16 16 C 1.41446 * 120.17431 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00224 * 24.42900 * 16 15 14 18 18 C 1.39939 * 119.99679 * 204.43088 * 16 15 14 19 19 N 1.30830 * 120.00127 * 17.89521 * 18 16 15 20 20 Si 1.86799 * 119.99805 * 197.88827 * 18 16 15 21 21 H 1.48497 * 109.46978 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46988 * 120.00232 * 20 18 16 23 23 H 1.48504 * 109.47214 * 240.00362 * 20 18 16 24 24 C 1.38994 * 120.02183 * 180.02562 * 11 9 8 25 25 C 1.53004 * 109.46893 * 300.00015 * 6 4 3 26 26 C 1.52997 * 109.47337 * 59.99830 * 25 6 4 27 27 C 1.52997 * 109.47249 * 179.97438 * 25 6 4 28 28 C 1.53001 * 109.47061 * 299.99721 * 25 6 4 29 29 H 1.09000 * 109.47342 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47193 * 300.00214 * 1 2 3 31 31 H 1.08996 * 109.47253 * 60.00173 * 1 2 3 32 32 H 1.08996 * 109.46925 * 239.99754 * 2 1 3 33 33 H 1.08996 * 109.47253 * 119.99827 * 2 1 3 34 34 H 0.97007 * 120.00018 * 24.99696 * 8 6 4 35 35 H 1.08001 * 119.82051 * 359.97438 * 12 11 9 36 36 H 1.08001 * 119.79505 * 180.26295 * 13 12 11 37 37 H 1.07995 * 119.98541 * 179.74379 * 14 13 12 38 38 H 0.96998 * 120.00088 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.20602 * 359.97438 * 24 11 9 40 40 H 1.09000 * 109.47137 * 59.99672 * 26 25 6 41 41 H 1.09001 * 109.47291 * 180.02562 * 26 25 6 42 42 H 1.09000 * 109.47183 * 299.99856 * 26 25 6 43 43 H 1.09001 * 109.47226 * 59.99517 * 27 25 6 44 44 H 1.08992 * 109.47461 * 180.02562 * 27 25 6 45 45 H 1.09004 * 109.47159 * 300.00069 * 27 25 6 46 46 H 1.09001 * 109.46940 * 59.99829 * 28 25 6 47 47 H 1.09003 * 109.47231 * 180.02562 * 28 25 6 48 48 H 1.09001 * 109.46891 * 300.00163 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5850 3.4698 0.8887 8 7 5.3836 2.8608 -0.0010 9 6 6.1120 3.8821 0.4918 10 8 5.5550 4.8671 0.9358 11 6 7.5888 3.8050 0.4914 12 6 8.2304 2.6695 -0.0152 13 6 9.6115 2.5924 -0.0243 14 6 10.3710 3.6274 0.4756 15 6 9.7431 4.7752 0.9946 16 6 10.5200 5.8398 1.5081 17 1 11.5362 5.9787 1.1700 18 6 9.9718 6.7130 2.4543 19 7 8.9014 6.3661 3.1219 20 14 10.7685 8.3739 2.7644 21 1 11.9573 8.5241 1.8872 22 1 9.7939 9.4538 2.4659 23 1 11.1874 8.4642 4.1863 24 6 8.3404 4.8578 1.0000 25 6 3.4487 3.6840 -1.2505 26 6 1.9208 3.7641 -1.2500 27 6 4.0330 5.0980 -1.2509 28 6 3.9198 2.9366 -2.4997 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8282 2.0749 -0.3557 35 1 7.6442 1.8504 -0.4051 36 1 10.0974 1.7134 -0.4214 37 1 11.4487 3.5582 0.4689 38 1 8.5213 6.9715 3.7774 39 1 7.8493 5.7343 1.3961 40 1 1.5852 4.2965 -0.3601 41 1 1.5845 4.2956 -2.1403 42 1 1.5042 2.7569 -1.2496 43 1 5.1215 5.0414 -1.2510 44 1 3.6964 5.6300 -2.1406 45 1 3.6970 5.6302 -0.3609 46 1 3.5032 1.9294 -2.4991 47 1 3.5840 3.4687 -3.3897 48 1 5.0083 2.8796 -2.5000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753245897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:10 Heat of formation + Delta-G solvation = -114.969117 kcal Electronic energy + Delta-G solvation = -29580.621623 eV Core-core repulsion = 25600.034276 eV Total energy + Delta-G solvation = -3980.587347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.16040 -39.41104 -37.53263 -36.79809 -36.48969 -33.82678 -33.18885 -32.00288 -30.25048 -29.44082 -27.90406 -27.28178 -26.83738 -25.26637 -23.65904 -22.44811 -21.40494 -20.92248 -19.87183 -19.00262 -18.12952 -17.39602 -17.01640 -16.82672 -15.67267 -15.63513 -15.33600 -14.99157 -14.58412 -14.30969 -13.90762 -13.87114 -13.51758 -13.35766 -13.20388 -13.03678 -12.95087 -12.64981 -12.50377 -12.23955 -12.11547 -12.00165 -11.77431 -11.64121 -11.53153 -11.24210 -11.16303 -11.08122 -10.91653 -10.74574 -10.72415 -10.56547 -10.47391 -10.37218 -10.02041 -9.68951 -9.22505 -9.07697 -8.76676 -7.64418 -7.51999 -6.80593 -4.41309 2.02958 2.15744 2.33219 2.80468 3.07941 3.12572 3.14981 3.61351 3.81194 3.91808 4.39464 4.56567 4.64427 4.67604 4.71230 4.84472 4.98488 5.02098 5.31776 5.35273 5.44673 5.48254 5.60205 5.61519 5.65827 5.75770 5.77100 5.82874 5.97246 6.06495 6.10126 6.10448 6.19083 6.26770 6.30043 6.38600 6.62912 6.70604 6.71660 6.97975 7.00873 7.20797 7.37756 7.56453 7.69156 7.74732 7.91683 8.04597 8.17673 8.49954 8.79485 8.82456 8.87144 10.14113 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.002980 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.251860 B = 9394.299036 C = 9939.223880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.346 6.346 4 C 0.465 3.535 5 O -0.501 6.501 6 C 0.166 3.834 7 H 0.123 0.877 8 N -0.722 5.722 9 C 0.571 3.429 10 O -0.537 6.537 11 C -0.128 4.128 12 C -0.215 4.215 13 C -0.098 4.098 14 C -0.210 4.210 15 C 0.097 3.903 16 C -0.459 4.459 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.909 3.091 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.274 1.274 24 C -0.090 4.090 25 C -0.072 4.072 26 C -0.150 4.150 27 C -0.132 4.132 28 C -0.145 4.145 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.408 0.592 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.284 0.716 39 H 0.135 0.865 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.067 0.933 46 H 0.046 0.954 47 H 0.062 0.938 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.186 -7.538 -7.252 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.262 6.262 4 C 0.307 3.693 5 O -0.388 6.388 6 C 0.058 3.942 7 H 0.141 0.859 8 N -0.378 5.378 9 C 0.363 3.637 10 O -0.414 6.414 11 C -0.131 4.131 12 C -0.236 4.236 13 C -0.116 4.116 14 C -0.230 4.230 15 C 0.095 3.905 16 C -0.488 4.488 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.733 3.267 21 H -0.184 1.184 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.110 4.110 25 C -0.073 4.073 26 C -0.208 4.208 27 C -0.190 4.190 28 C -0.202 4.202 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.246 0.754 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.153 0.847 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.547 -7.075 -6.719 18.355 hybrid contribution 0.566 -0.055 0.145 0.587 sum -14.981 -7.130 -6.574 17.846 Atomic orbital electron populations 1.21804 0.92513 1.02935 1.03615 1.23071 0.95439 0.80557 1.02715 1.86615 1.23944 1.31929 1.83761 1.23785 0.80967 0.92495 0.72039 1.90671 1.60325 1.42787 1.45031 1.20461 0.82865 0.88916 1.01931 0.85947 1.45807 1.03621 1.22720 1.65659 1.18779 0.88067 0.81337 0.75518 1.90711 1.72922 1.31504 1.46272 1.19385 0.89623 0.97830 1.06244 1.20384 0.94390 0.98030 1.10749 1.20441 0.93462 0.97602 1.00078 1.21112 0.97927 0.94828 1.09131 1.17606 0.91705 0.91422 0.89785 1.19612 1.00102 1.09097 1.19994 0.90057 1.25961 0.94520 0.99744 0.94347 1.69798 1.18409 1.35646 1.16883 0.86247 0.80195 0.81449 0.78805 1.18351 1.19553 1.19940 1.21629 0.93624 0.97605 0.98156 1.20910 0.96489 0.96766 0.93149 1.22092 0.93346 1.03242 1.02105 1.21904 1.01899 0.93417 1.01736 1.21923 1.02115 0.99150 0.97010 0.90314 0.91368 0.91416 0.91193 0.91164 0.75371 0.89147 0.88876 0.88606 0.90511 0.84714 0.92169 0.92313 0.90634 0.91768 0.93133 0.91387 0.93449 0.91943 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.35 -3.90 7.14 -39.26 -0.28 -4.18 16 4 C 0.46 6.41 5.99 36.00 0.22 6.62 16 5 O -0.50 -7.98 15.59 -18.75 -0.29 -8.28 16 6 C 0.17 2.43 2.07 -69.09 -0.14 2.28 16 7 H 0.12 1.89 7.58 -51.93 -0.39 1.50 16 8 N -0.72 -12.38 4.03 -55.87 -0.23 -12.61 16 9 C 0.57 12.06 6.13 -12.31 -0.08 11.98 16 10 O -0.54 -12.35 13.45 5.32 0.07 -12.28 16 11 C -0.13 -2.98 5.87 -105.04 -0.62 -3.60 16 12 C -0.22 -4.62 9.55 -38.92 -0.37 -4.99 16 13 C -0.10 -2.11 10.01 -39.72 -0.40 -2.51 16 14 C -0.21 -5.00 9.78 -38.81 -0.38 -5.38 16 15 C 0.10 2.56 5.57 -106.87 -0.60 1.96 16 16 C -0.46 -11.98 9.05 -37.72 -0.34 -12.32 16 17 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 19 N -0.78 -20.53 10.96 55.55 0.61 -19.92 16 20 Si 0.91 18.65 29.60 -169.99 -5.03 13.62 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.09 -2.36 8.24 -38.44 -0.32 -2.68 16 25 C -0.07 -0.91 0.62 -154.51 -0.10 -1.01 16 26 C -0.15 -1.57 7.95 37.16 0.30 -1.27 16 27 C -0.13 -1.94 7.00 37.16 0.26 -1.68 16 28 C -0.14 -1.72 8.07 37.16 0.30 -1.42 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 34 H 0.41 6.80 5.81 -40.82 -0.24 6.57 16 35 H 0.09 1.68 6.38 -52.49 -0.33 1.35 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 39 H 0.14 3.80 5.74 -52.49 -0.30 3.49 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.75 5.32 -51.93 -0.28 0.48 16 43 H 0.06 1.12 5.78 -51.93 -0.30 0.82 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.07 7.53 -51.93 -0.39 0.68 16 46 H 0.05 0.54 7.22 -51.93 -0.37 0.16 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.84 7.61 -51.93 -0.39 0.45 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -29.03 384.13 -8.30 -37.33 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -7.20 Total: 12.59 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -1.74 Total: -12.07 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.38 Total: -32.53 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.50 Total: -24.74 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.03 -8.30 -37.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753245897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.636 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds