Wall clock time and date at job start Tue Mar 31 2020 18:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45197 * 109.47131 * 2 1 4 4 C 1.34230 * 117.00473 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99450 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00689 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.46971 * 59.99376 * 6 4 3 8 8 N 1.46494 * 109.47500 * 179.97438 * 6 4 3 9 9 C 1.34778 * 120.00245 * 204.99998 * 8 6 4 10 10 O 1.21552 * 119.99884 * 359.97438 * 9 8 6 11 11 C 1.47888 * 120.00089 * 180.02562 * 9 8 6 12 12 C 1.39918 * 120.02372 * 359.72369 * 11 9 8 13 13 C 1.38328 * 120.35618 * 179.72035 * 12 11 9 14 14 C 1.37756 * 120.41301 * 0.55649 * 13 12 11 15 15 C 1.40753 * 120.03467 * 359.72367 * 14 13 12 16 16 C 1.41446 * 120.17431 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00224 * 24.42900 * 16 15 14 18 18 C 1.39939 * 119.99679 * 204.43088 * 16 15 14 19 19 N 1.30830 * 120.00127 * 17.89521 * 18 16 15 20 20 Si 1.86799 * 119.99805 * 197.88827 * 18 16 15 21 21 H 1.48497 * 109.46978 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46988 * 120.00232 * 20 18 16 23 23 H 1.48504 * 109.47214 * 240.00362 * 20 18 16 24 24 C 1.38994 * 120.02183 * 180.02562 * 11 9 8 25 25 C 1.53004 * 109.46893 * 300.00015 * 6 4 3 26 26 C 1.52997 * 109.47337 * 59.99830 * 25 6 4 27 27 C 1.52997 * 109.47249 * 179.97438 * 25 6 4 28 28 C 1.53001 * 109.47061 * 299.99721 * 25 6 4 29 29 H 1.09000 * 109.47342 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47193 * 300.00214 * 1 2 3 31 31 H 1.08996 * 109.47253 * 60.00173 * 1 2 3 32 32 H 1.08996 * 109.46925 * 239.99754 * 2 1 3 33 33 H 1.08996 * 109.47253 * 119.99827 * 2 1 3 34 34 H 0.97007 * 120.00018 * 24.99696 * 8 6 4 35 35 H 1.08001 * 119.82051 * 359.97438 * 12 11 9 36 36 H 1.08001 * 119.79505 * 180.26295 * 13 12 11 37 37 H 1.07995 * 119.98541 * 179.74379 * 14 13 12 38 38 H 0.96998 * 120.00088 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.20602 * 359.97438 * 24 11 9 40 40 H 1.09000 * 109.47137 * 59.99672 * 26 25 6 41 41 H 1.09001 * 109.47291 * 180.02562 * 26 25 6 42 42 H 1.09000 * 109.47183 * 299.99856 * 26 25 6 43 43 H 1.09001 * 109.47226 * 59.99517 * 27 25 6 44 44 H 1.08992 * 109.47461 * 180.02562 * 27 25 6 45 45 H 1.09004 * 109.47159 * 300.00069 * 27 25 6 46 46 H 1.09001 * 109.46940 * 59.99829 * 28 25 6 47 47 H 1.09003 * 109.47231 * 180.02562 * 28 25 6 48 48 H 1.09001 * 109.46891 * 300.00163 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5850 3.4698 0.8887 8 7 5.3836 2.8608 -0.0010 9 6 6.1120 3.8821 0.4918 10 8 5.5550 4.8671 0.9358 11 6 7.5888 3.8050 0.4914 12 6 8.2304 2.6695 -0.0152 13 6 9.6115 2.5924 -0.0243 14 6 10.3710 3.6274 0.4756 15 6 9.7431 4.7752 0.9946 16 6 10.5200 5.8398 1.5081 17 1 11.5362 5.9787 1.1700 18 6 9.9718 6.7130 2.4543 19 7 8.9014 6.3661 3.1219 20 14 10.7685 8.3739 2.7644 21 1 11.9573 8.5241 1.8872 22 1 9.7939 9.4538 2.4659 23 1 11.1874 8.4642 4.1863 24 6 8.3404 4.8578 1.0000 25 6 3.4487 3.6840 -1.2505 26 6 1.9208 3.7641 -1.2500 27 6 4.0330 5.0980 -1.2509 28 6 3.9198 2.9366 -2.4997 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8282 2.0749 -0.3557 35 1 7.6442 1.8504 -0.4051 36 1 10.0974 1.7134 -0.4214 37 1 11.4487 3.5582 0.4689 38 1 8.5213 6.9715 3.7774 39 1 7.8493 5.7343 1.3961 40 1 1.5852 4.2965 -0.3601 41 1 1.5845 4.2956 -2.1403 42 1 1.5042 2.7569 -1.2496 43 1 5.1215 5.0414 -1.2510 44 1 3.6964 5.6300 -2.1406 45 1 3.6970 5.6302 -0.3609 46 1 3.5032 1.9294 -2.4991 47 1 3.5840 3.4687 -3.3897 48 1 5.0083 2.8796 -2.5000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753245897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:09 Heat of formation + Delta-G solvation = -129.651927 kcal Electronic energy + Delta-G solvation = -29581.258317 eV Core-core repulsion = 25600.034276 eV Total energy + Delta-G solvation = -3981.224042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.32788 -40.87782 -39.11808 -38.01000 -37.78827 -35.65699 -34.68213 -32.67146 -32.02544 -31.28991 -29.13998 -28.28297 -27.93290 -27.12405 -24.67325 -23.82901 -22.83026 -22.40720 -21.43590 -20.17659 -19.76832 -18.61752 -18.34312 -17.98848 -17.23517 -17.13353 -16.64021 -16.53021 -16.22292 -15.51698 -15.27537 -15.07336 -14.92166 -14.59756 -14.53327 -14.41415 -14.29099 -13.91441 -13.60784 -13.48914 -13.09871 -13.07471 -12.96921 -12.87160 -12.79329 -12.61384 -12.57257 -12.50210 -12.27140 -12.18049 -11.94062 -11.87045 -11.74731 -11.56187 -11.50508 -11.37152 -11.07963 -10.81327 -10.22347 -9.50156 -9.40063 -8.66941 -6.37993 0.35195 0.92409 0.99501 1.24846 1.37362 1.46587 1.53469 2.06664 2.19673 2.23606 2.77297 3.38301 3.53794 3.69185 3.76249 3.94572 4.00890 4.03636 4.08219 4.28807 4.36120 4.39607 4.41500 4.56942 4.71554 4.73368 4.79573 4.87172 4.88653 4.95316 4.96644 5.00875 5.07589 5.08490 5.12839 5.16890 5.25224 5.26456 5.31981 5.37024 5.41984 5.50713 5.52123 5.84145 5.91425 6.04366 6.26607 6.41012 6.51484 6.62156 6.87749 6.93239 7.21587 8.30017 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.002980 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.251860 B = 9394.299036 C = 9939.223880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 O -0.339 6.339 4 C 0.475 3.525 5 O -0.524 6.524 6 C 0.159 3.841 7 H 0.112 0.888 8 N -0.706 5.706 9 C 0.573 3.427 10 O -0.563 6.563 11 C -0.137 4.137 12 C -0.202 4.202 13 C -0.096 4.096 14 C -0.217 4.217 15 C 0.067 3.933 16 C -0.494 4.494 17 H 0.084 0.916 18 C 0.030 3.970 19 N -0.823 5.823 20 Si 0.982 3.018 21 H -0.252 1.252 22 H -0.269 1.269 23 H -0.265 1.265 24 C -0.124 4.124 25 C -0.066 4.066 26 C -0.144 4.144 27 C -0.127 4.127 28 C -0.141 4.141 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.412 0.588 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.287 0.713 39 H 0.105 0.895 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.030 0.970 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.081 0.919 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.539 -9.090 -8.794 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 O -0.255 6.255 4 C 0.318 3.682 5 O -0.413 6.413 6 C 0.052 3.948 7 H 0.130 0.870 8 N -0.361 5.361 9 C 0.364 3.636 10 O -0.443 6.443 11 C -0.140 4.140 12 C -0.222 4.222 13 C -0.113 4.113 14 C -0.237 4.237 15 C 0.065 3.935 16 C -0.523 4.523 17 H 0.102 0.898 18 C -0.185 4.185 19 N -0.448 5.448 20 Si 0.803 3.197 21 H -0.175 1.175 22 H -0.194 1.194 23 H -0.189 1.189 24 C -0.145 4.145 25 C -0.068 4.068 26 C -0.201 4.201 27 C -0.184 4.184 28 C -0.199 4.199 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.251 0.749 35 H 0.142 0.858 36 H 0.153 0.847 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.929 -8.669 -8.282 20.745 hybrid contribution 0.875 0.238 0.548 1.060 sum -16.054 -8.431 -7.734 19.714 Atomic orbital electron populations 1.21831 0.90052 1.04426 1.03933 1.23411 0.97294 0.79050 1.02810 1.86608 1.22120 1.33736 1.83023 1.23395 0.81760 0.91422 0.71581 1.90663 1.61058 1.43213 1.46342 1.20644 0.81129 0.90229 1.02779 0.87023 1.45553 1.04899 1.21492 1.64133 1.18481 0.87539 0.81849 0.75751 1.90694 1.73173 1.32747 1.47668 1.19693 0.91091 0.97744 1.05456 1.20794 0.94921 0.97787 1.08681 1.20882 0.93491 0.98173 0.98798 1.21395 0.98920 0.94681 1.08660 1.17962 0.92044 0.92736 0.90785 1.19874 1.00551 1.10627 1.21296 0.89828 1.26844 0.94885 1.03151 0.93593 1.69888 1.20084 1.37065 1.17771 0.85156 0.79225 0.76317 0.79033 1.17536 1.19389 1.18941 1.21434 0.94110 0.98045 1.00862 1.20902 0.98169 0.95171 0.92530 1.22054 0.91015 1.04049 1.02997 1.21818 0.99732 0.95000 1.01881 1.21899 1.01111 0.99728 0.97115 0.88222 0.91420 0.90714 0.90685 0.91597 0.74875 0.85758 0.84735 0.87318 0.90230 0.87737 0.92309 0.90484 0.89770 0.95081 0.90983 0.93190 0.92592 0.90042 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 71.98 0.74 -0.60 16 2 C 0.05 0.74 6.19 71.98 0.45 1.18 16 3 O -0.34 -6.94 7.14 -51.42 -0.37 -7.31 16 4 C 0.48 12.42 5.99 71.23 0.43 12.85 16 5 O -0.52 -15.89 15.59 21.95 0.34 -15.55 16 6 C 0.16 4.58 2.07 44.25 0.09 4.67 16 7 H 0.11 3.51 7.58 -2.39 -0.02 3.49 16 8 N -0.71 -24.14 4.03 -448.95 -1.81 -25.95 16 9 C 0.57 24.93 6.13 86.80 0.53 25.46 16 10 O -0.56 -27.33 13.45 -3.88 -0.05 -27.39 16 11 C -0.14 -6.55 5.87 -20.13 -0.12 -6.66 16 12 C -0.20 -8.40 9.55 22.70 0.22 -8.19 16 13 C -0.10 -3.95 10.01 22.18 0.22 -3.73 16 14 C -0.22 -10.31 9.78 22.77 0.22 -10.09 16 15 C 0.07 3.66 5.57 -21.32 -0.12 3.54 16 16 C -0.49 -26.89 9.05 23.47 0.21 -26.68 16 17 H 0.08 4.31 7.91 -2.91 -0.02 4.29 16 18 C 0.03 1.58 5.14 85.25 0.44 2.02 16 19 N -0.82 -45.51 10.96 21.83 0.24 -45.27 16 20 Si 0.98 39.45 29.60 68.60 2.03 41.48 16 21 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 22 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 23 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 24 C -0.12 -6.86 8.24 23.01 0.19 -6.67 16 25 C -0.07 -1.61 0.62 -52.18 -0.03 -1.64 16 26 C -0.14 -2.65 7.95 71.98 0.57 -2.08 16 27 C -0.13 -3.73 7.00 71.98 0.50 -3.23 16 28 C -0.14 -3.07 8.07 71.98 0.58 -2.49 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 33 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 34 H 0.41 13.29 5.81 -92.70 -0.54 12.75 16 35 H 0.12 4.28 6.38 -2.91 -0.02 4.27 16 36 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 37 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 38 H 0.29 14.57 8.30 -92.71 -0.77 13.80 16 39 H 0.10 6.35 5.74 -2.91 -0.02 6.34 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.42 5.32 -2.39 -0.01 1.41 16 43 H 0.03 1.11 5.78 -2.39 -0.01 1.09 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.05 1.62 7.53 -2.38 -0.02 1.61 16 46 H 0.06 1.12 7.22 -2.39 -0.02 1.11 16 47 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.05 1.20 7.61 -2.39 -0.02 1.18 16 Total: -1.00 -66.73 384.13 5.94 -60.78 By element: Atomic # 1 Polarization: 41.10 SS G_CDS: 0.44 Total: 41.54 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 5.13 Total: -22.34 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -1.57 Total: -71.22 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.08 Total: -50.24 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -66.73 5.94 -60.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753245897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.868 kcal (2) G-P(sol) polarization free energy of solvation -66.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds