Wall clock time and date at job start Tue Mar 31 2020 18:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47703 * 2 1 4 4 C 1.34226 * 117.00377 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00105 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00008 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.47220 * 180.02562 * 6 4 3 8 8 H 1.09007 * 109.47108 * 305.00198 * 7 6 4 9 9 C 1.53000 * 109.47286 * 65.00032 * 7 6 4 10 10 C 1.52994 * 109.47269 * 185.00343 * 7 6 4 11 11 N 1.46505 * 109.47241 * 175.00020 * 10 7 6 12 12 C 1.34777 * 119.99711 * 179.97438 * 11 10 7 13 13 O 1.21277 * 120.00301 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99632 * 179.72265 * 12 11 10 15 15 C 1.50705 * 109.47274 * 180.27538 * 14 12 11 16 16 C 1.37639 * 120.12718 * 265.00526 * 15 14 12 17 17 C 1.38615 * 120.24516 * 179.97438 * 16 15 14 18 18 C 1.38656 * 120.49868 * 0.02562 * 17 16 15 19 19 C 1.37595 * 120.25483 * 0.02824 * 18 17 16 20 20 C 1.40696 * 120.12498 * 84.72689 * 15 14 12 21 21 C 1.41402 * 120.24248 * 359.97438 * 20 15 14 22 22 H 1.07996 * 119.99829 * 333.89281 * 21 20 15 23 23 C 1.39950 * 119.99483 * 153.89632 * 21 20 15 24 24 N 1.30815 * 120.00107 * 343.71358 * 23 21 20 25 25 Si 1.86799 * 119.99432 * 163.71841 * 23 21 20 26 26 H 1.48497 * 109.47291 * 60.00067 * 25 23 21 27 27 H 1.48504 * 109.47081 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47166 * 299.99473 * 25 23 21 29 29 H 1.09000 * 109.47135 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46892 * 299.99687 * 1 2 3 31 31 H 1.08996 * 109.46983 * 59.99627 * 1 2 3 32 32 H 1.09003 * 109.46973 * 239.99795 * 2 1 3 33 33 H 1.08999 * 109.47455 * 120.00189 * 2 1 3 34 34 H 1.09007 * 109.47171 * 60.00423 * 6 4 3 35 35 H 1.09001 * 109.47438 * 300.00927 * 6 4 3 36 36 H 1.09004 * 109.46883 * 300.00583 * 9 7 6 37 37 H 1.09007 * 109.46912 * 60.00045 * 9 7 6 38 38 H 1.09000 * 109.47402 * 179.97438 * 9 7 6 39 39 H 1.08997 * 109.47702 * 55.00064 * 10 7 6 40 40 H 1.09003 * 109.47343 * 294.99839 * 10 7 6 41 41 H 0.96996 * 119.99643 * 0.02562 * 11 10 7 42 42 H 1.09001 * 109.47618 * 300.28210 * 14 12 11 43 43 H 1.09002 * 109.46818 * 60.27892 * 14 12 11 44 44 H 1.07997 * 119.87607 * 359.97438 * 16 15 14 45 45 H 1.08002 * 119.74730 * 179.97438 * 17 16 15 46 46 H 1.08001 * 119.87309 * 180.02562 * 18 17 16 47 47 H 1.07994 * 120.13062 * 179.97438 * 19 18 17 48 48 H 0.97004 * 120.00061 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0000 7 6 5.4488 2.8572 0.0001 8 1 5.7807 2.2498 0.8422 9 6 5.9263 2.2211 -1.3069 10 6 6.0333 4.2655 0.1254 11 7 7.4909 4.1803 0.2456 12 6 8.2238 5.3048 0.3678 13 8 7.6766 6.3871 0.3788 14 6 9.7226 5.2169 0.4978 15 6 10.2980 6.6039 0.6260 16 6 10.7632 7.2645 -0.4883 17 6 11.2924 8.5405 -0.3733 18 6 11.3601 9.1655 0.8626 19 6 10.9020 8.5235 1.9902 20 6 10.3563 7.2306 1.8843 21 6 9.8756 6.5640 3.0349 22 1 9.1116 5.8066 2.9404 23 6 10.3897 6.8860 4.2961 24 7 11.5121 7.5508 4.3946 25 14 9.4733 6.3664 5.8386 26 1 9.3522 4.8867 5.8677 27 1 10.2212 6.8250 7.0369 28 1 8.1183 6.9741 5.8378 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.5846 3.4700 0.8896 35 1 3.5853 3.4690 -0.8904 36 1 5.5097 1.2178 -1.3961 37 1 5.5943 2.8285 -2.1490 38 1 7.0148 2.1645 -1.3070 39 1 5.6236 4.7516 1.0107 40 1 5.7751 4.8462 -0.7602 41 1 7.9285 3.3147 0.2364 42 1 9.9771 4.6346 1.3834 43 1 10.1361 4.7324 -0.3867 44 1 10.7156 6.7870 -1.4558 45 1 11.6554 9.0514 -1.2528 46 1 11.7740 10.1600 0.9406 47 1 10.9561 9.0120 2.9518 48 1 11.8686 7.7737 5.2688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776988786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:47 Heat of formation + Delta-G solvation = -145.678150 kcal Electronic energy + Delta-G solvation = -27873.328736 eV Core-core repulsion = 23891.409745 eV Total energy + Delta-G solvation = -3981.918991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.63576 -40.74957 -39.18808 -38.19024 -36.98733 -35.47880 -34.25506 -33.30909 -32.62960 -31.32147 -29.42590 -28.75272 -27.29562 -26.45785 -24.27895 -22.81167 -22.62734 -21.97116 -21.32789 -20.62375 -19.05636 -18.80073 -17.80088 -17.70129 -17.56330 -17.26113 -16.59846 -16.47155 -16.07950 -15.87635 -15.35046 -15.30999 -14.88099 -14.59971 -14.40936 -14.35600 -14.20553 -13.64872 -13.49717 -13.38783 -13.36494 -13.34366 -12.89283 -12.85581 -12.73725 -12.59887 -12.51258 -12.46532 -12.26087 -12.10805 -12.04298 -11.85279 -11.51489 -11.32050 -11.29920 -11.18698 -11.01060 -10.72407 -9.95355 -9.20321 -9.13723 -8.57430 -6.27083 1.01996 1.15922 1.18093 1.36503 1.46689 1.55601 1.65017 1.88939 2.21003 2.46794 2.81033 3.54201 3.77933 3.81572 3.88149 4.00749 4.04585 4.09388 4.20234 4.35225 4.42465 4.46258 4.49500 4.51034 4.64578 4.67363 4.73508 4.81017 4.82520 4.84907 4.90934 4.92340 5.01332 5.09731 5.16513 5.22154 5.25667 5.34332 5.39291 5.52836 5.57312 5.62204 5.80064 6.06301 6.19283 6.23787 6.44525 6.69182 6.74029 6.77935 7.01556 7.13840 7.49149 8.38782 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.002399 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.744445 B =11666.972278 C =13109.600591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.466 3.534 5 O -0.532 6.532 6 C -0.107 4.107 7 C -0.080 4.080 8 H 0.081 0.919 9 C -0.152 4.152 10 C 0.127 3.873 11 N -0.724 5.724 12 C 0.517 3.483 13 O -0.574 6.574 14 C -0.071 4.071 15 C -0.187 4.187 16 C -0.092 4.092 17 C -0.243 4.243 18 C -0.118 4.118 19 C -0.193 4.193 20 C 0.094 3.906 21 C -0.482 4.482 22 H 0.072 0.928 23 C 0.035 3.965 24 N -0.827 5.827 25 Si 0.971 3.029 26 H -0.254 1.254 27 H -0.268 1.268 28 H -0.270 1.270 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.412 0.588 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.288 -15.476 -7.739 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.282 6.282 4 C 0.310 3.690 5 O -0.422 6.422 6 C -0.144 4.144 7 C -0.099 4.099 8 H 0.100 0.900 9 C -0.209 4.209 10 C 0.003 3.997 11 N -0.378 5.378 12 C 0.305 3.695 13 O -0.452 6.452 14 C -0.111 4.111 15 C -0.189 4.189 16 C -0.110 4.110 17 C -0.262 4.262 18 C -0.136 4.136 19 C -0.213 4.213 20 C 0.092 3.908 21 C -0.511 4.511 22 H 0.090 0.910 23 C -0.180 4.180 24 N -0.453 5.453 25 Si 0.793 3.207 26 H -0.178 1.178 27 H -0.192 1.192 28 H -0.194 1.194 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.248 0.752 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.123 0.877 47 H 0.114 0.886 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.330 -14.939 -7.561 24.097 hybrid contribution 0.184 -0.344 0.922 1.001 sum -17.146 -15.283 -6.639 23.909 Atomic orbital electron populations 1.21827 0.90716 1.04271 1.03675 1.23249 0.96909 0.79346 1.02491 1.86516 1.24347 1.33595 1.83725 1.24015 0.80494 0.93173 0.71296 1.90642 1.60731 1.44290 1.46488 1.21440 0.94502 0.90335 1.08166 1.21052 0.93237 0.94909 1.00695 0.90022 1.21960 1.01902 1.01237 0.95833 1.21305 0.79944 0.96644 1.01786 1.45894 1.07416 1.08992 1.75530 1.21061 0.90349 0.83609 0.74456 1.90661 1.74100 1.29965 1.50485 1.20289 0.90228 0.96239 1.04318 1.19559 1.08862 0.96615 0.93827 1.20741 0.98331 0.94994 0.96926 1.20721 1.11244 0.97593 0.96632 1.20943 1.00317 0.98829 0.93539 1.21298 1.06591 0.96184 0.97226 1.17749 0.89225 0.91086 0.92716 1.19587 1.19947 1.20135 0.91461 0.91026 1.26677 0.94283 0.93373 1.03626 1.69877 1.16545 1.31401 1.27514 0.85417 0.78879 0.79954 0.76490 1.17806 1.19242 1.19447 0.88384 0.91420 0.91232 0.91250 0.91524 0.85708 0.85223 0.91828 0.91966 0.91949 0.92476 0.91509 0.75153 0.88616 0.87002 0.86519 0.86710 0.87748 0.88577 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 71.98 0.74 -0.44 16 2 C 0.05 0.71 6.19 71.98 0.45 1.15 16 3 O -0.36 -6.14 10.22 -51.37 -0.53 -6.66 16 4 C 0.47 8.46 7.68 71.24 0.55 9.00 16 5 O -0.53 -12.41 13.72 21.98 0.30 -12.11 16 6 C -0.11 -1.49 5.29 29.85 0.16 -1.33 16 7 C -0.08 -1.38 2.07 -10.80 -0.02 -1.41 16 8 H 0.08 1.55 7.96 -2.38 -0.02 1.53 16 9 C -0.15 -2.57 8.81 71.98 0.63 -1.93 16 10 C 0.13 2.92 5.06 86.38 0.44 3.35 16 11 N -0.72 -19.46 5.28 -463.06 -2.45 -21.91 16 12 C 0.52 19.55 7.44 87.66 0.65 20.20 16 13 O -0.57 -27.49 16.03 -3.02 -0.05 -27.54 16 14 C -0.07 -2.71 5.18 29.10 0.15 -2.56 16 15 C -0.19 -9.05 4.43 -19.40 -0.09 -9.13 16 16 C -0.09 -4.16 9.66 22.22 0.21 -3.95 16 17 C -0.24 -11.16 10.05 22.46 0.23 -10.94 16 18 C -0.12 -5.88 10.02 22.22 0.22 -5.66 16 19 C -0.19 -10.84 8.69 22.73 0.20 -10.64 16 20 C 0.09 5.23 5.56 -21.29 -0.12 5.12 16 21 C -0.48 -26.20 8.14 23.46 0.19 -26.01 16 22 H 0.07 3.78 6.67 -2.91 -0.02 3.76 16 23 C 0.03 1.79 5.16 85.26 0.44 2.23 16 24 N -0.83 -44.36 10.95 21.83 0.24 -44.12 16 25 Si 0.97 39.47 29.59 68.60 2.03 41.50 16 26 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 27 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 33 H 0.07 0.91 8.13 -2.39 -0.02 0.90 16 34 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.22 5.96 -2.39 -0.01 1.20 16 37 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 38 H 0.06 1.02 7.18 -2.39 -0.02 1.00 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.41 8.58 7.65 -92.71 -0.71 7.87 16 42 H 0.10 3.65 7.08 -2.39 -0.02 3.63 16 43 H 0.11 3.36 8.05 -2.39 -0.02 3.34 16 44 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 45 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 46 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 47 H 0.10 5.63 6.20 -2.91 -0.02 5.61 16 48 H 0.29 13.95 8.30 -92.70 -0.77 13.18 16 Total: -1.00 -73.10 397.47 4.83 -68.26 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.25 Total: 35.52 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 5.03 Total: -32.94 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -2.21 Total: -66.03 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -0.27 Total: -46.31 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -73.10 4.83 -68.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776988786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.415 kcal (2) G-P(sol) polarization free energy of solvation -73.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds