Wall clock time and date at job start Tue Mar 31 2020 19:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34774 * 119.99836 * 2 1 4 4 O 1.21284 * 120.00371 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00075 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47133 * 305.00606 * 5 3 2 7 7 C 1.53002 * 109.46770 * 64.99963 * 5 3 2 8 8 C 1.50704 * 109.47057 * 185.00224 * 7 5 3 9 9 C 1.38238 * 119.99789 * 269.72741 * 8 7 5 10 10 C 1.38239 * 119.99608 * 179.76560 * 9 8 7 11 11 C 1.38231 * 119.99774 * 0.50790 * 10 9 8 12 12 C 1.38234 * 120.00553 * 359.74304 * 11 10 9 13 13 C 1.38231 * 119.99732 * 90.00093 * 8 7 5 14 14 O 1.45198 * 109.47348 * 184.99988 * 5 3 2 15 15 C 1.34221 * 116.99903 * 90.00141 * 14 5 3 16 16 O 1.20826 * 120.00367 * 359.97438 * 15 14 5 17 17 C 1.50706 * 120.00092 * 180.02562 * 15 14 5 18 18 C 1.52997 * 109.47238 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.46947 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.46891 * 179.97438 * 19 18 17 21 21 C 1.50706 * 109.46994 * 179.97438 * 20 19 18 22 22 H 1.07995 * 119.99838 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99810 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00437 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99747 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47264 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47361 * 119.99803 * 25 23 21 28 28 H 1.48508 * 109.46860 * 239.99505 * 25 23 21 29 29 H 1.08999 * 109.47042 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46875 * 300.00247 * 1 2 3 31 31 H 1.08998 * 109.46964 * 59.99979 * 1 2 3 32 32 H 0.96995 * 119.99589 * 180.02562 * 2 1 3 33 33 H 1.09006 * 109.47352 * 304.99922 * 7 5 3 34 34 H 1.09004 * 109.47362 * 64.99866 * 7 5 3 35 35 H 1.07997 * 119.99939 * 359.97438 * 9 8 7 36 36 H 1.08000 * 119.99585 * 180.22986 * 10 9 8 37 37 H 1.08007 * 119.99682 * 179.72554 * 11 10 9 38 38 H 1.07994 * 120.00434 * 179.97438 * 12 11 10 39 39 H 1.07996 * 120.00444 * 359.97438 * 13 8 7 40 40 H 1.09001 * 109.46953 * 299.99668 * 17 15 14 41 41 H 1.09000 * 109.47318 * 59.99266 * 17 15 14 42 42 H 1.09001 * 109.46832 * 299.99686 * 18 17 15 43 43 H 1.09004 * 109.47261 * 59.99705 * 18 17 15 44 44 H 1.08992 * 109.47554 * 299.99696 * 19 18 17 45 45 H 1.08996 * 109.47261 * 60.00229 * 19 18 17 46 46 H 1.08998 * 109.47844 * 299.99997 * 20 19 18 47 47 H 1.09001 * 109.47248 * 60.00689 * 20 19 18 48 48 H 0.96999 * 120.00397 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0090 0.5779 0.8426 7 6 4.1564 0.5573 -1.3065 8 6 5.6583 0.4443 -1.2552 9 6 6.4457 1.4857 -1.7096 10 6 7.8233 1.3840 -1.6581 11 6 8.4135 0.2367 -1.1619 12 6 7.6262 -0.8067 -0.7123 13 6 6.2485 -0.7030 -0.7590 14 8 4.1299 2.5310 0.1198 15 6 4.3325 2.9993 1.3612 16 8 4.1124 2.2934 2.3167 17 6 4.8336 4.4062 1.5634 18 6 4.9784 4.6858 3.0606 19 6 5.4876 6.1139 3.2657 20 6 5.6318 6.3937 4.7630 21 6 6.1340 7.8002 4.9651 22 1 6.3303 8.4314 4.1111 23 6 6.3429 8.2810 6.2404 24 7 6.1034 7.5125 7.2804 25 14 6.9647 10.0246 6.4909 26 1 7.1543 10.6771 5.1704 27 1 5.9743 10.7940 7.2861 28 1 8.2606 9.9886 7.2153 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 3.7218 -0.4335 -1.4392 34 1 3.8683 1.1953 -2.1421 35 1 5.9845 2.3801 -2.1018 36 1 8.4385 2.1991 -2.0097 37 1 9.4899 0.1555 -1.1258 38 1 8.0873 -1.7032 -0.3251 39 1 5.6334 -1.5181 -0.4077 40 1 5.8027 4.5201 1.0775 41 1 4.1243 5.1105 1.1287 42 1 4.0095 4.5718 3.5468 43 1 5.6879 3.9815 3.4948 44 1 6.4565 6.2275 2.7797 45 1 4.7784 6.8185 2.8315 46 1 4.6627 6.2803 5.2489 47 1 6.3409 5.6892 5.1977 48 1 6.2500 7.8509 8.1776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805694956.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:01 Heat of formation + Delta-G solvation = -123.965832 kcal Electronic energy + Delta-G solvation = -27995.616707 eV Core-core repulsion = 24014.639233 eV Total energy + Delta-G solvation = -3980.977474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.06950 -39.55108 -39.36539 -36.72106 -35.05538 -34.93527 -33.84315 -32.63667 -31.15612 -30.35435 -29.62677 -27.11359 -25.99027 -24.57492 -22.93752 -22.72423 -21.52313 -20.94020 -20.44243 -19.98111 -18.27599 -17.76024 -17.13670 -16.50875 -16.16188 -15.99876 -15.66139 -15.59445 -15.34979 -15.24415 -14.63081 -14.41137 -13.95206 -13.80493 -13.67396 -13.29366 -13.21914 -12.98441 -12.72685 -12.64739 -12.55907 -12.36255 -11.83759 -11.64345 -11.62107 -11.48796 -11.42016 -11.26036 -10.99040 -10.56203 -10.52091 -10.42689 -10.34509 -10.00720 -9.61017 -9.55114 -9.25746 -9.17658 -9.01135 -8.97433 -8.29253 -5.93888 -3.96189 1.01950 1.14603 2.20246 2.23977 2.45094 2.93978 3.34772 3.41911 3.46231 3.49183 4.11032 4.39550 4.44382 4.50881 4.54706 4.69373 4.74506 4.77022 4.85070 4.89984 5.06624 5.14382 5.20828 5.29903 5.31796 5.34315 5.40517 5.41759 5.44015 5.71036 5.77030 5.78720 5.93754 6.11181 6.17785 6.22723 6.26658 6.29685 6.37438 6.51715 6.72651 6.81651 6.97928 6.99591 7.20311 7.74470 7.75779 7.86693 7.90712 8.07368 8.49251 9.11625 9.67511 11.17543 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010792 B = 0.002442 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.964480 B =11464.142117 C =13369.607025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.732 5.732 3 C 0.500 3.500 4 O -0.516 6.516 5 C 0.077 3.923 6 H 0.111 0.889 7 C -0.069 4.069 8 C -0.091 4.091 9 C -0.099 4.099 10 C -0.119 4.119 11 C -0.119 4.119 12 C -0.121 4.121 13 C -0.116 4.116 14 O -0.327 6.327 15 C 0.465 3.535 16 O -0.505 6.505 17 C -0.109 4.109 18 C -0.108 4.108 19 C -0.109 4.109 20 C 0.020 3.980 21 C -0.519 4.519 22 H 0.055 0.945 23 C 0.055 3.945 24 N -0.896 5.896 25 Si 0.891 3.109 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.402 0.598 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.050 0.950 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 -22.769 -22.803 32.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.386 5.386 3 C 0.285 3.715 4 O -0.390 6.390 5 C 0.017 3.983 6 H 0.129 0.871 7 C -0.107 4.107 8 C -0.091 4.091 9 C -0.117 4.117 10 C -0.137 4.137 11 C -0.137 4.137 12 C -0.139 4.139 13 C -0.134 4.134 14 O -0.243 6.243 15 C 0.308 3.692 16 O -0.392 6.392 17 C -0.147 4.147 18 C -0.145 4.145 19 C -0.147 4.147 20 C -0.017 4.017 21 C -0.557 4.557 22 H 0.074 0.926 23 C -0.146 4.146 24 N -0.535 5.535 25 Si 0.719 3.281 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.236 0.764 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.035 0.965 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.068 -22.209 -22.331 31.756 hybrid contribution 0.476 0.355 0.430 0.733 sum -3.592 -21.854 -21.901 31.147 Atomic orbital electron populations 1.21578 0.78974 1.02422 1.02687 1.45721 1.08065 1.08355 1.76488 1.20887 0.89993 0.84260 0.76349 1.90765 1.69761 1.31095 1.47418 1.22459 0.90506 0.84155 1.01138 0.87099 1.20653 0.92684 1.01561 0.95780 1.19625 0.94327 0.94869 1.00320 1.21133 0.93636 0.98148 0.98811 1.21219 0.94911 0.97965 0.99587 1.21217 1.00010 0.93817 0.98621 1.21131 0.93730 0.99053 0.99965 1.21033 0.95124 0.97423 0.99824 1.86658 1.76166 1.29011 1.32493 1.24292 0.73631 0.90930 0.80325 1.90649 1.47945 1.58927 1.41638 1.21605 1.03257 0.88403 1.01412 1.21574 1.02654 0.99423 0.90869 1.21643 0.99379 0.92504 1.01179 1.19102 0.97180 0.96418 0.89033 1.21318 1.43722 0.98653 0.92022 0.92628 1.25043 0.95775 0.97552 0.96238 1.69985 1.49294 1.36097 0.98145 0.86552 0.78457 0.84939 0.78143 1.19745 1.21051 1.21065 0.90377 0.91953 0.91998 0.76424 0.88574 0.88884 0.85524 0.85795 0.86044 0.86009 0.86091 0.87870 0.87657 0.91555 0.91594 0.93199 0.93163 0.96541 0.96563 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.85 0.64 1.22 16 2 N -0.73 -5.52 5.61 -67.07 -0.38 -5.89 16 3 C 0.50 5.90 7.15 -10.98 -0.08 5.82 16 4 O -0.52 -8.48 16.51 -14.05 -0.23 -8.71 16 5 C 0.08 0.82 2.34 -27.88 -0.07 0.75 16 6 H 0.11 1.20 7.16 -51.93 -0.37 0.83 16 7 C -0.07 -0.50 5.04 -27.88 -0.14 -0.64 16 8 C -0.09 -0.77 4.97 -104.62 -0.52 -1.29 16 9 C -0.10 -0.90 9.41 -39.58 -0.37 -1.27 16 10 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 11 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 12 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 13 C -0.12 -0.90 9.70 -39.58 -0.38 -1.28 16 14 O -0.33 -4.42 8.93 -45.86 -0.41 -4.83 16 15 C 0.46 7.33 7.92 36.01 0.29 7.61 16 16 O -0.51 -9.27 15.20 -18.75 -0.29 -9.55 16 17 C -0.11 -1.62 5.81 -27.88 -0.16 -1.78 16 18 C -0.11 -1.98 4.50 -26.73 -0.12 -2.10 16 19 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 20 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 21 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 22 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 23 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 24 N -0.90 -27.74 13.29 55.43 0.74 -27.01 16 25 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.40 1.60 8.53 -40.82 -0.35 1.25 16 33 H 0.10 0.39 7.71 -51.93 -0.40 -0.01 16 34 H 0.09 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 40 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 43 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 410.09 15.07 6.18 6.18 Total: -1.00 -37.63 410.09 -10.05 -47.68 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.84 Total: -1.89 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -2.80 Total: -13.07 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.36 Total: -32.90 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.93 Total: -23.10 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -37.63 -10.05 -47.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805694956.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.289 kcal (2) G-P(sol) polarization free energy of solvation -37.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds