Wall clock time and date at job start Tue Mar 31 2020 17:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 O 1.20819 * 120.00480 * 239.99936 * 4 2 1 6 6 O 1.34231 * 119.99710 * 60.00260 * 4 2 1 7 7 C 1.45200 * 117.00102 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47127 * 180.02562 * 7 6 4 9 9 O 1.42895 * 109.47072 * 65.00364 * 8 7 6 10 10 C 1.42907 * 114.00203 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47123 * 179.97438 * 10 9 8 12 12 H 1.07991 * 120.00332 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99461 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00236 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99565 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46966 * 90.00068 * 15 13 11 17 17 H 1.48501 * 109.46888 * 210.00340 * 15 13 11 18 18 H 1.48500 * 109.46768 * 329.99996 * 15 13 11 19 19 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 20 20 C 1.47165 * 110.99667 * 180.02562 * 19 2 1 21 21 C 1.52902 * 108.51281 * 52.12309 * 20 19 2 22 22 C 1.50715 * 109.96254 * 50.33143 * 21 20 19 23 23 C 1.38679 * 118.48878 * 163.26862 * 22 21 20 24 24 C 1.38031 * 120.35345 * 179.82545 * 23 22 21 25 25 C 1.38257 * 119.82848 * 0.02562 * 24 23 22 26 26 C 1.38022 * 119.86536 * 0.05318 * 25 24 23 27 27 C 1.37836 * 121.66782 * 343.22341 * 22 21 20 28 28 C 1.46641 * 111.00129 * 302.96885 * 19 2 1 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08994 * 109.47017 * 299.99990 * 7 6 4 33 33 H 1.08999 * 109.46866 * 60.00142 * 7 6 4 34 34 H 1.09005 * 109.47180 * 185.00083 * 8 7 6 35 35 H 1.08997 * 109.47414 * 305.00412 * 8 7 6 36 36 H 1.08999 * 109.46905 * 300.00050 * 10 9 8 37 37 H 1.09000 * 109.46887 * 59.99554 * 10 9 8 38 38 H 0.96991 * 119.99438 * 179.97438 * 14 13 11 39 39 H 1.09000 * 109.63278 * 171.83101 * 20 19 2 40 40 H 1.09005 * 109.63324 * 292.22306 * 20 19 2 41 41 H 1.09000 * 109.38696 * 170.48054 * 21 20 19 42 42 H 1.08992 * 109.38581 * 290.28219 * 21 20 19 43 43 H 1.08006 * 119.82068 * 359.84083 * 23 22 21 44 44 H 1.07998 * 120.08693 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.07029 * 180.02562 * 25 24 23 46 46 H 1.08004 * 119.80903 * 179.97438 * 26 25 24 47 47 H 1.09004 * 109.29703 * 49.45970 * 28 19 2 48 48 H 1.08999 * 109.30237 * 168.83360 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6928 -1.1196 6 8 1.7081 -0.2519 -2.4495 7 6 2.2277 -0.9858 -3.5896 8 6 1.7567 -0.3186 -4.8834 9 8 2.3289 0.9871 -4.9817 10 6 1.9510 1.7001 -6.1611 11 6 2.6078 3.0564 -6.1602 12 1 3.2499 3.3450 -5.3413 13 6 2.3897 3.9286 -7.2056 14 7 1.6081 3.5770 -8.2032 15 14 3.2044 5.6096 -7.2050 16 1 4.5236 5.5205 -7.8809 17 1 2.3418 6.5780 -7.9284 18 1 3.3953 6.0665 -5.8049 19 7 2.0196 -0.6925 1.1995 20 6 3.4907 -0.7117 1.2338 21 6 3.9993 0.7181 1.0470 22 6 3.2947 1.6442 2.0047 23 6 3.8466 2.8939 2.2434 24 6 3.2314 3.7740 3.1106 25 6 2.0589 3.4077 3.7452 26 6 1.5096 2.1636 3.5096 27 6 2.1269 1.2777 2.6387 28 6 1.4924 -0.0698 2.4179 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.3172 -0.9847 -3.5565 33 1 1.8643 -2.0129 -3.5568 34 1 2.0717 -0.9186 -5.7372 35 1 0.6696 -0.2392 -4.8763 36 1 2.2704 1.1419 -7.0411 37 1 0.8679 1.8212 -6.1810 38 1 1.4544 4.1908 -8.9384 39 1 3.8296 -1.0982 2.1950 40 1 3.8676 -1.3453 0.4309 41 1 5.0721 0.7484 1.2376 42 1 3.8043 1.0408 0.0243 43 1 4.7626 3.1800 1.7478 44 1 3.6652 4.7460 3.2937 45 1 1.5741 4.0935 4.4241 46 1 0.5939 1.8783 4.0061 47 1 0.4134 0.0522 2.3222 48 1 1.7048 -0.7127 3.2721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815212708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:29 Heat of formation + Delta-G solvation = -96.068491 kcal Electronic energy + Delta-G solvation = -28883.086710 eV Core-core repulsion = 24903.318955 eV Total energy + Delta-G solvation = -3979.767754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.25922 -39.95912 -37.78624 -36.84565 -35.89867 -33.48215 -32.79080 -32.34617 -30.64180 -29.97305 -29.09653 -26.95982 -25.78020 -23.96510 -23.57438 -22.46189 -22.38333 -22.05458 -20.94886 -19.19285 -17.68913 -16.89981 -16.77614 -16.50221 -16.21180 -16.04529 -15.73956 -15.26951 -15.15752 -14.83260 -14.55218 -14.36180 -14.08934 -13.94145 -13.42649 -13.40141 -13.13976 -12.85033 -12.66280 -12.41846 -12.30904 -12.17944 -11.98663 -11.91701 -11.67246 -11.54567 -11.44773 -11.21362 -10.94638 -10.90835 -10.80290 -10.75667 -10.34848 -10.10636 -9.94998 -9.14569 -9.00138 -8.89007 -8.81424 -8.60369 -8.22718 -6.13461 -4.15124 1.09585 1.14047 2.28970 2.62287 3.28799 3.33792 3.39227 3.49313 3.68207 4.31070 4.46345 4.48506 4.64136 4.65494 4.69222 4.75534 4.82138 4.86559 4.94576 5.00250 5.14314 5.22563 5.23176 5.23595 5.34331 5.37488 5.44696 5.45553 5.51693 5.61838 5.70963 5.76922 5.83283 5.86377 5.90739 5.94874 5.99843 6.09278 6.18296 6.28080 6.36588 6.61376 6.64365 6.76598 6.79265 7.04122 7.38462 7.76494 7.90796 8.11120 8.51062 8.97424 9.49671 10.98130 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.002955 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.635752 B = 9474.549288 C =11228.966271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 H 0.088 0.912 4 C 0.467 3.533 5 O -0.500 6.500 6 O -0.340 6.340 7 C 0.075 3.925 8 C 0.062 3.938 9 O -0.391 6.391 10 C 0.195 3.805 11 C -0.515 4.515 12 H 0.066 0.934 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.908 3.092 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.271 1.271 19 N -0.507 5.507 20 C 0.038 3.962 21 C -0.125 4.125 22 C -0.076 4.076 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.117 4.117 28 C 0.088 3.912 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.264 0.736 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.095 0.905 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 -6.937 24.118 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 H 0.105 0.895 4 C 0.309 3.691 5 O -0.388 6.388 6 O -0.255 6.255 7 C 0.002 3.998 8 C -0.016 4.016 9 O -0.311 6.311 10 C 0.120 3.880 11 C -0.553 4.553 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.735 3.265 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.196 1.196 19 N -0.230 5.230 20 C -0.089 4.089 21 C -0.163 4.163 22 C -0.076 4.076 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.132 4.132 27 C -0.119 4.119 28 C -0.040 4.040 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.113 0.887 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.753 -7.609 24.018 25.206 hybrid contribution 0.650 1.704 -0.383 1.864 sum -0.103 -5.905 23.635 24.361 Atomic orbital electron populations 1.21880 0.91101 1.03580 1.03708 1.21255 0.97798 0.96925 0.86630 0.89489 1.23329 0.77723 0.82880 0.85168 1.90557 1.35484 1.25706 1.87085 1.86589 1.69053 1.55418 1.14450 1.23210 0.99873 0.94251 0.82498 1.22322 0.97957 0.87870 0.93457 1.87914 1.71380 1.25425 1.46386 1.20234 0.95154 0.91183 0.81381 1.21043 1.29176 0.98519 1.06582 0.91554 1.24946 0.95394 0.99056 0.95065 1.69958 1.37251 1.36763 1.09796 0.86337 0.79105 0.82751 0.78320 1.20440 1.21024 1.19616 1.62474 1.09255 1.51080 1.00161 1.22587 0.86457 0.95290 1.04557 1.21197 1.00765 0.95796 0.98542 1.19605 0.94940 0.95267 0.97821 1.21153 1.00292 0.93432 0.98462 1.21118 0.95952 0.99473 0.97134 1.21092 0.96268 0.96586 1.00147 1.21045 0.99933 0.93871 0.98329 1.20367 0.95704 0.97726 0.98075 1.21283 0.99859 0.90127 0.92728 0.90143 0.91135 0.90964 0.90586 0.90378 0.91952 0.93176 0.97619 0.97490 0.92615 0.90261 0.87128 0.89733 0.90332 0.86007 0.86048 0.86093 0.85991 0.88661 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.83 37.16 0.33 -1.15 16 2 C 0.08 1.02 1.87 -68.86 -0.13 0.89 16 3 H 0.09 1.13 5.53 -51.93 -0.29 0.85 16 4 C 0.47 6.99 6.75 36.00 0.24 7.23 16 5 O -0.50 -8.10 13.61 -18.74 -0.26 -8.36 16 6 O -0.34 -5.68 10.09 -42.03 -0.42 -6.11 16 7 C 0.08 1.20 5.84 37.16 0.22 1.41 16 8 C 0.06 1.12 6.33 37.16 0.24 1.36 16 9 O -0.39 -9.47 10.30 -38.80 -0.40 -9.87 16 10 C 0.19 5.32 5.69 36.01 0.20 5.53 16 11 C -0.52 -15.20 9.43 -34.44 -0.32 -15.53 16 12 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 15 Si 0.91 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 N -0.51 -5.58 4.68 -229.60 -1.08 -6.66 16 20 C 0.04 0.42 5.48 -3.73 -0.02 0.40 16 21 C -0.12 -1.36 5.15 -27.93 -0.14 -1.50 16 22 C -0.08 -0.83 5.06 -104.60 -0.53 -1.35 16 23 C -0.12 -1.20 9.66 -39.49 -0.38 -1.58 16 24 C -0.12 -1.12 10.05 -39.65 -0.40 -1.52 16 25 C -0.12 -1.08 10.05 -39.65 -0.40 -1.48 16 26 C -0.11 -0.99 9.65 -39.48 -0.38 -1.37 16 27 C -0.12 -1.15 5.32 -104.65 -0.56 -1.71 16 28 C 0.09 0.77 5.32 -5.18 -0.03 0.74 16 29 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.59 6.14 -51.93 -0.32 0.28 16 32 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 33 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 40 H 0.11 1.43 5.60 -51.93 -0.29 1.13 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.99 6.65 -51.93 -0.35 0.64 16 43 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 45 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 47 H 0.10 0.71 5.68 -51.93 -0.29 0.42 16 48 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -33.16 386.14 -10.20 -43.35 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.42 Total: -0.84 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.16 Total: -8.08 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: -0.34 Total: -32.71 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -1.08 Total: -24.34 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.16 -10.20 -43.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815212708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.716 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds