Wall clock time and date at job start Tue Mar 31 2020 17:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 O 1.20819 * 120.00480 * 239.99936 * 4 2 1 6 6 O 1.34231 * 119.99710 * 60.00260 * 4 2 1 7 7 C 1.45200 * 117.00102 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47127 * 180.02562 * 7 6 4 9 9 O 1.42895 * 109.47072 * 65.00364 * 8 7 6 10 10 C 1.42907 * 114.00203 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47123 * 179.97438 * 10 9 8 12 12 H 1.07991 * 120.00332 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99461 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00236 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99565 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46966 * 90.00068 * 15 13 11 17 17 H 1.48501 * 109.46888 * 210.00340 * 15 13 11 18 18 H 1.48500 * 109.46768 * 329.99996 * 15 13 11 19 19 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 20 20 C 1.47165 * 110.99667 * 180.02562 * 19 2 1 21 21 C 1.52902 * 108.51281 * 52.12309 * 20 19 2 22 22 C 1.50715 * 109.96254 * 50.33143 * 21 20 19 23 23 C 1.38679 * 118.48878 * 163.26862 * 22 21 20 24 24 C 1.38031 * 120.35345 * 179.82545 * 23 22 21 25 25 C 1.38257 * 119.82848 * 0.02562 * 24 23 22 26 26 C 1.38022 * 119.86536 * 0.05318 * 25 24 23 27 27 C 1.37836 * 121.66782 * 343.22341 * 22 21 20 28 28 C 1.46641 * 111.00129 * 302.96885 * 19 2 1 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08994 * 109.47017 * 299.99990 * 7 6 4 33 33 H 1.08999 * 109.46866 * 60.00142 * 7 6 4 34 34 H 1.09005 * 109.47180 * 185.00083 * 8 7 6 35 35 H 1.08997 * 109.47414 * 305.00412 * 8 7 6 36 36 H 1.08999 * 109.46905 * 300.00050 * 10 9 8 37 37 H 1.09000 * 109.46887 * 59.99554 * 10 9 8 38 38 H 0.96991 * 119.99438 * 179.97438 * 14 13 11 39 39 H 1.09000 * 109.63278 * 171.83101 * 20 19 2 40 40 H 1.09005 * 109.63324 * 292.22306 * 20 19 2 41 41 H 1.09000 * 109.38696 * 170.48054 * 21 20 19 42 42 H 1.08992 * 109.38581 * 290.28219 * 21 20 19 43 43 H 1.08006 * 119.82068 * 359.84083 * 23 22 21 44 44 H 1.07998 * 120.08693 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.07029 * 180.02562 * 25 24 23 46 46 H 1.08004 * 119.80903 * 179.97438 * 26 25 24 47 47 H 1.09004 * 109.29703 * 49.45970 * 28 19 2 48 48 H 1.08999 * 109.30237 * 168.83360 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6928 -1.1196 6 8 1.7081 -0.2519 -2.4495 7 6 2.2277 -0.9858 -3.5896 8 6 1.7567 -0.3186 -4.8834 9 8 2.3289 0.9871 -4.9817 10 6 1.9510 1.7001 -6.1611 11 6 2.6078 3.0564 -6.1602 12 1 3.2499 3.3450 -5.3413 13 6 2.3897 3.9286 -7.2056 14 7 1.6081 3.5770 -8.2032 15 14 3.2044 5.6096 -7.2050 16 1 4.5236 5.5205 -7.8809 17 1 2.3418 6.5780 -7.9284 18 1 3.3953 6.0665 -5.8049 19 7 2.0196 -0.6925 1.1995 20 6 3.4907 -0.7117 1.2338 21 6 3.9993 0.7181 1.0470 22 6 3.2947 1.6442 2.0047 23 6 3.8466 2.8939 2.2434 24 6 3.2314 3.7740 3.1106 25 6 2.0589 3.4077 3.7452 26 6 1.5096 2.1636 3.5096 27 6 2.1269 1.2777 2.6387 28 6 1.4924 -0.0698 2.4179 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.3172 -0.9847 -3.5565 33 1 1.8643 -2.0129 -3.5568 34 1 2.0717 -0.9186 -5.7372 35 1 0.6696 -0.2392 -4.8763 36 1 2.2704 1.1419 -7.0411 37 1 0.8679 1.8212 -6.1810 38 1 1.4544 4.1908 -8.9384 39 1 3.8296 -1.0982 2.1950 40 1 3.8676 -1.3453 0.4309 41 1 5.0721 0.7484 1.2376 42 1 3.8043 1.0408 0.0243 43 1 4.7626 3.1800 1.7478 44 1 3.6652 4.7460 3.2937 45 1 1.5741 4.0935 4.4241 46 1 0.5939 1.8783 4.0061 47 1 0.4134 0.0522 2.3222 48 1 1.7048 -0.7127 3.2721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815212708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:28 Heat of formation + Delta-G solvation = -115.711738 kcal Electronic energy + Delta-G solvation = -28883.938505 eV Core-core repulsion = 24903.318955 eV Total energy + Delta-G solvation = -3980.619550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.22218 -40.97633 -38.93294 -38.30977 -37.22930 -34.97161 -34.29968 -33.16362 -31.74252 -31.16074 -29.90564 -29.02821 -26.64835 -24.97605 -24.55738 -24.40438 -23.38765 -23.09536 -22.02653 -20.08539 -18.87093 -18.68934 -18.02240 -17.63183 -17.48926 -17.17460 -16.86321 -16.54319 -16.32481 -16.14551 -15.94621 -15.59549 -15.33435 -14.85533 -14.63971 -14.35949 -14.09140 -14.07240 -13.84878 -13.52088 -13.46505 -13.22805 -13.08793 -13.01303 -12.93617 -12.78226 -12.70492 -12.49874 -12.40419 -12.31922 -12.03524 -11.94203 -11.81425 -11.66308 -11.30229 -11.07542 -10.90205 -10.29018 -9.71014 -9.54459 -9.46255 -8.34187 -6.46381 0.38024 0.43092 1.10754 1.38613 1.41210 1.50061 1.53238 2.32749 2.76717 2.82035 2.99714 3.04435 3.52089 3.69007 3.82274 3.83762 3.91431 3.94030 4.01096 4.01616 4.08509 4.14027 4.24936 4.39418 4.41145 4.47936 4.52766 4.56885 4.64379 4.66054 4.71145 4.76029 4.83574 4.85416 4.87553 4.97447 5.09439 5.15136 5.16156 5.19262 5.42586 5.47980 5.52301 5.59154 5.63003 5.77226 5.93224 5.96950 6.08797 6.47881 6.70471 6.77818 7.25220 8.78069 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.002955 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.635752 B = 9474.549288 C =11228.966271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.077 0.923 4 C 0.464 3.536 5 O -0.515 6.515 6 O -0.358 6.358 7 C 0.079 3.921 8 C 0.054 3.946 9 O -0.410 6.410 10 C 0.209 3.791 11 C -0.551 4.551 12 H 0.058 0.942 13 C 0.009 3.991 14 N -0.928 5.928 15 Si 0.981 3.019 16 H -0.267 1.267 17 H -0.272 1.272 18 H -0.267 1.267 19 N -0.511 5.511 20 C 0.042 3.958 21 C -0.118 4.118 22 C -0.096 4.096 23 C -0.135 4.135 24 C -0.129 4.129 25 C -0.127 4.127 26 C -0.115 4.115 27 C -0.124 4.124 28 C 0.089 3.911 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.057 0.943 36 H -0.008 1.008 37 H -0.010 1.010 38 H 0.272 0.728 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.121 0.879 44 H 0.136 0.864 45 H 0.145 0.855 46 H 0.149 0.851 47 H 0.113 0.887 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.536 -6.279 25.932 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 H 0.094 0.906 4 C 0.308 3.692 5 O -0.404 6.404 6 O -0.274 6.274 7 C 0.006 3.994 8 C -0.023 4.023 9 O -0.330 6.330 10 C 0.134 3.866 11 C -0.589 4.589 12 H 0.077 0.923 13 C -0.190 4.190 14 N -0.567 5.567 15 Si 0.804 3.196 16 H -0.192 1.192 17 H -0.197 1.197 18 H -0.191 1.191 19 N -0.233 5.233 20 C -0.085 4.085 21 C -0.157 4.157 22 C -0.096 4.096 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.133 4.133 27 C -0.126 4.126 28 C -0.038 4.038 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.010 0.990 37 H 0.008 0.992 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.139 0.861 44 H 0.154 0.846 45 H 0.162 0.838 46 H 0.167 0.833 47 H 0.131 0.869 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.466 -6.974 25.845 26.809 hybrid contribution 0.856 1.426 -0.904 1.893 sum -0.610 -5.548 24.940 25.557 Atomic orbital electron populations 1.21888 0.89322 1.04155 1.04451 1.21281 0.99073 0.95876 0.85889 0.90587 1.23937 0.77246 0.82802 0.85236 1.90549 1.36093 1.26553 1.87172 1.86584 1.69421 1.56122 1.15294 1.23180 0.99547 0.95240 0.81443 1.22647 0.98354 0.85598 0.95692 1.87861 1.72077 1.28116 1.44958 1.19865 0.93737 0.90988 0.82031 1.21373 1.30217 1.00112 1.07169 0.92340 1.25925 0.95604 1.03269 0.94199 1.70053 1.37896 1.38463 1.10321 0.85217 0.78431 0.77300 0.78686 1.19226 1.19679 1.19092 1.62500 1.09076 1.51235 1.00521 1.22486 0.86812 0.94844 1.04385 1.21089 1.01311 0.95952 0.97330 1.19677 0.95889 0.95512 0.98548 1.21312 1.00806 0.93863 0.99301 1.21388 0.96414 0.99973 0.96890 1.21448 0.95888 0.97094 1.00014 1.21375 1.00628 0.93521 0.97758 1.20534 0.95359 0.98438 0.98223 1.21431 1.00622 0.89804 0.91969 0.91081 0.90591 0.88561 0.91214 0.87294 0.89996 0.92460 0.98988 0.99235 0.91940 0.88787 0.89348 0.89209 0.92882 0.86078 0.84589 0.83757 0.83310 0.86867 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.83 71.98 0.64 -2.03 16 2 C 0.09 2.13 1.87 44.17 0.08 2.21 16 3 H 0.08 2.03 5.53 -2.39 -0.01 2.01 16 4 C 0.46 14.06 6.75 71.24 0.48 14.54 16 5 O -0.51 -16.85 13.61 21.99 0.30 -16.55 16 6 O -0.36 -12.16 10.09 -48.78 -0.49 -12.65 16 7 C 0.08 2.52 5.84 71.98 0.42 2.94 16 8 C 0.05 1.98 6.33 71.98 0.46 2.43 16 9 O -0.41 -20.39 10.30 -145.57 -1.50 -21.89 16 10 C 0.21 11.76 5.69 71.24 0.41 12.17 16 11 C -0.55 -33.21 9.43 25.60 0.24 -32.97 16 12 H 0.06 3.52 7.81 -2.92 -0.02 3.50 16 13 C 0.01 0.51 5.46 84.66 0.46 0.97 16 14 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 15 Si 0.98 44.53 29.54 68.60 2.03 46.55 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 N -0.51 -10.73 4.68 -880.33 -4.12 -14.85 16 20 C 0.04 0.93 5.48 86.22 0.47 1.40 16 21 C -0.12 -2.67 5.15 29.82 0.15 -2.52 16 22 C -0.10 -2.06 5.06 -19.85 -0.10 -2.16 16 23 C -0.13 -2.81 9.66 22.33 0.22 -2.60 16 24 C -0.13 -2.28 10.05 22.23 0.22 -2.05 16 25 C -0.13 -1.92 10.05 22.22 0.22 -1.70 16 26 C -0.11 -1.70 9.65 22.33 0.22 -1.48 16 27 C -0.12 -2.22 5.32 -19.88 -0.11 -2.33 16 28 C 0.09 1.35 5.32 85.57 0.46 1.81 16 29 H 0.07 1.49 8.11 -2.39 -0.02 1.47 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.33 6.14 -2.39 -0.01 1.32 16 32 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 33 H 0.11 2.78 8.13 -2.39 -0.02 2.76 16 34 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.09 1.76 8.05 -2.39 -0.02 1.74 16 40 H 0.09 2.35 5.60 -2.38 -0.01 2.34 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.05 1.44 6.65 -2.39 -0.02 1.43 16 43 H 0.12 2.38 8.06 -2.91 -0.02 2.35 16 44 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 45 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 46 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 47 H 0.11 1.31 5.68 -2.39 -0.01 1.30 16 48 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.03 386.14 2.38 -69.65 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.95 Total: 16.44 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 4.94 Total: -11.36 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -3.84 Total: -70.20 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -1.69 Total: -51.09 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -72.03 2.38 -69.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815212708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.060 kcal (2) G-P(sol) polarization free energy of solvation -72.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds