Wall clock time and date at job start Tue Mar 31 2020 17:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47201 * 2 1 4 4 C 1.52995 * 109.47628 * 239.99776 * 2 1 3 5 5 O 1.42908 * 109.47118 * 64.99841 * 4 2 1 6 6 C 1.53000 * 109.47192 * 119.99580 * 2 1 3 7 7 C 1.53049 * 109.46034 * 300.00564 * 6 2 1 8 8 C 1.53190 * 109.31246 * 178.62399 * 7 6 2 9 9 N 1.46932 * 108.77381 * 54.63625 * 8 7 6 10 10 C 1.34770 * 120.63108 * 126.36975 * 9 8 7 11 11 O 1.21587 * 120.00139 * 354.15714 * 10 9 8 12 12 C 1.47539 * 119.99905 * 174.16068 * 10 9 8 13 13 C 1.39666 * 120.19515 * 306.23605 * 12 10 9 14 14 C 1.37831 * 119.91370 * 180.02562 * 13 12 10 15 15 C 1.38574 * 120.32746 * 0.02562 * 14 13 12 16 16 C 1.38027 * 120.39926 * 359.68507 * 15 14 13 17 17 C 1.38836 * 120.06965 * 0.59086 * 16 15 14 18 18 O 1.35519 * 120.15818 * 179.69983 * 17 16 15 19 19 C 1.34818 * 117.00200 * 5.44820 * 18 17 16 20 20 H 1.07999 * 119.99945 * 354.94910 * 19 18 17 21 21 C 1.38693 * 120.00316 * 174.67611 * 19 18 17 22 22 N 1.31518 * 120.00169 * 180.27289 * 21 19 18 23 23 Si 1.86801 * 119.99933 * 0.27198 * 21 19 18 24 24 H 1.48503 * 109.46924 * 89.99857 * 23 21 19 25 25 H 1.48492 * 109.47326 * 210.00062 * 23 21 19 26 26 H 1.48496 * 109.47090 * 330.00287 * 23 21 19 27 27 C 1.46932 * 118.73613 * 306.63972 * 9 8 7 28 28 C 1.52756 * 109.00676 * 53.31131 * 27 9 8 29 29 H 1.09007 * 109.47014 * 60.00390 * 1 2 3 30 30 H 1.08996 * 109.47287 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47718 * 300.00653 * 1 2 3 32 32 H 1.09000 * 109.47687 * 184.99827 * 4 2 1 33 33 H 1.09002 * 109.47246 * 305.00236 * 4 2 1 34 34 H 0.96698 * 114.00019 * 179.97438 * 5 4 2 35 35 H 1.08998 * 109.45752 * 59.97425 * 6 2 1 36 36 H 1.08996 * 109.49629 * 58.66851 * 7 6 2 37 37 H 1.09004 * 109.51649 * 298.59248 * 7 6 2 38 38 H 1.08995 * 109.58950 * 294.84856 * 8 7 6 39 39 H 1.08997 * 109.70378 * 174.48742 * 8 7 6 40 40 H 1.07991 * 120.04307 * 0.04734 * 13 12 10 41 41 H 1.08003 * 119.83487 * 180.02562 * 14 13 12 42 42 H 1.08002 * 119.79887 * 179.97438 * 15 14 13 43 43 H 1.08000 * 119.96432 * 180.30117 * 16 15 14 44 44 H 0.96998 * 119.99865 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.58273 * 173.14838 * 27 9 8 46 46 H 1.08999 * 109.58420 * 293.57099 * 27 9 8 47 47 H 1.09006 * 109.56342 * 185.55063 * 28 27 9 48 48 H 1.09001 * 109.38831 * 65.51622 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 1.6620 0.0167 -2.4131 6 6 2.0400 -0.7212 1.2493 7 6 1.5295 0.0005 2.4987 8 6 2.0135 -0.7439 3.7470 9 7 3.4754 -0.8764 3.6815 10 6 4.2493 -0.4568 4.7020 11 8 3.7502 0.1325 5.6411 12 6 5.7022 -0.7123 4.6794 13 6 6.1844 -2.0101 4.4951 14 6 7.5429 -2.2423 4.4755 15 6 8.4344 -1.1939 4.6385 16 6 7.9724 0.0946 4.8156 17 6 6.6074 0.3465 4.8438 18 8 6.1518 1.6101 5.0236 19 6 7.0729 2.5941 5.0561 20 1 8.1246 2.3505 5.0233 21 6 6.6699 3.9193 5.1259 22 7 7.5684 4.8794 5.1522 23 14 4.8509 4.3406 5.1826 24 1 4.3974 4.3872 6.5959 25 1 4.6294 5.6646 4.5477 26 1 4.0798 3.3048 4.4493 27 6 4.0778 -1.4697 2.4798 28 6 3.5703 -0.7222 1.2481 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.1264 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 1.9533 -0.3830 -3.2440 35 1 1.6761 -1.7486 1.2494 36 1 0.4398 0.0214 2.4871 37 1 1.9129 1.0209 2.5120 38 1 1.5581 -1.7336 3.7818 39 1 1.7372 -0.1829 4.6397 40 1 5.4938 -2.8304 4.3677 41 1 7.9144 -3.2463 4.3325 42 1 9.4971 -1.3857 4.6221 43 1 8.6735 0.9071 4.9370 44 1 7.2864 5.8062 5.2006 45 1 5.1631 -1.3852 2.5355 46 1 3.7941 -2.5197 2.4093 47 1 3.9331 -1.2157 0.3465 48 1 3.9348 0.3048 1.2724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846475952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:43 Heat of formation + Delta-G solvation = -94.658201 kcal Electronic energy + Delta-G solvation = -29787.857014 eV Core-core repulsion = 25808.150415 eV Total energy + Delta-G solvation = -3979.706600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.30873 -39.16621 -38.07926 -36.67779 -36.54885 -34.47909 -32.48919 -31.68416 -30.96218 -29.96737 -29.25603 -26.72071 -25.51352 -25.13404 -23.23869 -22.77590 -21.46061 -21.08660 -20.09705 -19.16422 -17.99772 -17.71553 -17.34862 -16.53842 -15.75746 -15.64253 -15.02326 -14.78499 -14.70972 -14.54152 -14.19076 -13.95807 -13.90035 -13.84424 -13.74209 -13.36035 -13.00857 -12.86681 -12.56492 -12.40334 -12.31775 -12.24740 -11.89244 -11.74733 -11.49543 -11.34329 -11.19776 -11.09642 -10.86628 -10.79775 -10.70533 -10.43856 -10.37778 -10.22984 -10.02294 -9.64522 -9.19967 -8.93667 -8.40454 -8.31335 -7.52063 -6.49986 -4.16214 1.68249 2.14365 3.18241 3.24241 3.30555 3.40928 3.48356 3.94128 4.24364 4.35960 4.51148 4.59792 4.68375 4.79686 4.82287 5.00445 5.03401 5.11554 5.16491 5.22942 5.30383 5.35617 5.39026 5.40311 5.45142 5.59885 5.64779 5.68809 5.72829 5.81034 5.84420 5.86831 5.91924 6.04515 6.06557 6.07855 6.10521 6.19423 6.35225 6.39398 6.51933 6.79880 6.86676 6.98928 7.13288 7.38235 7.45087 7.63945 7.77436 7.92336 8.70364 8.85011 9.45927 10.56088 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.004224 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.431121 B = 6627.630262 C = 7847.965295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.078 0.922 4 C 0.077 3.923 5 O -0.574 6.574 6 C -0.077 4.077 7 C -0.131 4.131 8 C 0.114 3.886 9 N -0.615 5.615 10 C 0.579 3.421 11 O -0.530 6.530 12 C -0.215 4.215 13 C -0.044 4.044 14 C -0.214 4.214 15 C -0.056 4.056 16 C -0.222 4.222 17 C 0.197 3.803 18 O -0.191 6.191 19 C -0.394 4.394 20 H 0.110 0.890 21 C 0.071 3.929 22 N -0.870 5.870 23 Si 0.903 3.097 24 H -0.270 1.270 25 H -0.283 1.283 26 H -0.257 1.257 27 C 0.110 3.890 28 C -0.137 4.137 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.377 0.623 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.138 0.862 44 H 0.282 0.718 45 H 0.095 0.905 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.266 -15.259 -11.996 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.097 0.903 4 C 0.000 4.000 5 O -0.379 6.379 6 C -0.096 4.096 7 C -0.169 4.169 8 C -0.009 4.009 9 N -0.350 5.350 10 C 0.369 3.631 11 O -0.406 6.406 12 C -0.220 4.220 13 C -0.063 4.063 14 C -0.233 4.233 15 C -0.075 4.075 16 C -0.241 4.241 17 C 0.141 3.859 18 O -0.093 6.093 19 C -0.469 4.469 20 H 0.127 0.873 21 C -0.134 4.134 22 N -0.507 5.507 23 Si 0.728 3.272 24 H -0.195 1.195 25 H -0.208 1.208 26 H -0.180 1.180 27 C -0.013 4.013 28 C -0.175 4.175 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.223 0.777 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.156 0.844 44 H 0.092 0.908 45 H 0.113 0.887 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.992 -14.160 -10.962 20.506 hybrid contribution -0.171 -0.066 -0.428 0.466 sum -10.163 -14.226 -11.390 20.866 Atomic orbital electron populations 1.21813 0.94725 1.01553 1.02059 1.21152 0.96468 1.00595 0.92422 0.90330 1.22347 0.98352 0.93897 0.85428 1.86485 1.81523 1.53492 1.16389 1.21111 0.95332 0.99465 0.93705 1.22021 1.00800 1.00309 0.93772 1.21492 0.80101 1.00047 0.99228 1.47992 1.06265 1.63028 1.17762 1.18248 0.86322 0.76981 0.81522 1.90745 1.74832 1.39952 1.35027 1.18740 0.91457 0.93419 1.18338 1.20700 0.95488 0.93794 0.96316 1.20552 0.92822 0.98543 1.11424 1.20953 0.98893 0.92262 0.95364 1.21262 0.95084 0.97949 1.09846 1.18949 0.91267 0.84831 0.90876 1.83623 1.36860 1.12054 1.76748 1.20839 0.89340 0.84276 1.52413 0.87314 1.24452 0.99998 0.93922 0.95009 1.69624 1.34111 1.00408 1.46529 0.86190 0.83520 0.77796 0.79685 1.19549 1.20846 1.18041 1.21665 0.99808 0.96008 0.83858 1.22034 0.95285 1.02309 0.97865 0.92190 0.93048 0.92322 0.93127 0.93872 0.77696 0.90941 0.90560 0.91167 0.92013 0.89043 0.86583 0.86919 0.86806 0.84407 0.90820 0.88667 0.91973 0.90699 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.74 37.15 0.32 -1.01 16 2 C -0.09 -0.88 2.21 -90.63 -0.20 -1.08 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.08 0.67 6.21 37.15 0.23 0.90 16 5 O -0.57 -5.37 13.20 -35.23 -0.46 -5.84 16 6 C -0.08 -0.78 1.74 -90.58 -0.16 -0.93 16 7 C -0.13 -1.55 5.05 -26.61 -0.13 -1.69 16 8 C 0.11 1.56 6.45 -3.71 -0.02 1.54 16 9 N -0.62 -9.83 2.98 -174.26 -0.52 -10.35 16 10 C 0.58 12.03 6.83 -12.47 -0.09 11.94 16 11 O -0.53 -13.16 16.16 1.73 0.03 -13.13 16 12 C -0.22 -4.37 4.61 -104.81 -0.48 -4.85 16 13 C -0.04 -0.71 7.79 -39.20 -0.31 -1.02 16 14 C -0.21 -3.26 10.02 -39.61 -0.40 -3.66 16 15 C -0.06 -0.94 10.03 -39.53 -0.40 -1.34 16 16 C -0.22 -4.63 9.16 -39.44 -0.36 -4.99 16 17 C 0.20 4.60 6.64 -38.60 -0.26 4.34 16 18 O -0.19 -5.21 7.78 -2.77 -0.02 -5.24 16 19 C -0.39 -11.17 9.95 30.90 0.31 -10.87 16 20 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 21 C 0.07 2.03 5.49 -17.52 -0.10 1.94 16 22 N -0.87 -25.14 13.96 55.48 0.77 -24.37 16 23 Si 0.90 23.04 28.62 -169.99 -4.86 18.18 16 24 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.26 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.11 1.37 5.54 -3.93 -0.02 1.34 16 28 C -0.14 -1.53 5.03 -26.84 -0.14 -1.66 16 29 H 0.06 0.60 7.82 -51.92 -0.41 0.19 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.53 6.40 -51.93 -0.33 0.20 16 32 H 0.05 0.41 6.14 -51.93 -0.32 0.09 16 33 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.38 1.82 9.12 45.56 0.42 2.23 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.76 6.36 -51.93 -0.33 0.43 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.46 6.99 -51.93 -0.36 1.09 16 40 H 0.12 1.54 7.76 -52.49 -0.41 1.13 16 41 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.14 2.99 5.64 -52.49 -0.30 2.69 16 44 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.10 1.30 5.40 -51.93 -0.28 1.02 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.67 6.25 -51.93 -0.32 0.34 16 48 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -33.89 378.38 -7.85 -41.73 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.29 Total: 4.41 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -2.19 Total: -11.10 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.26 Total: -34.71 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.46 Total: -24.20 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.86 Total: 18.18 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.89 -7.85 -41.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846475952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.924 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds