Wall clock time and date at job start Tue Mar 31 2020 17:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47201 * 2 1 4 4 C 1.52995 * 109.47628 * 239.99776 * 2 1 3 5 5 O 1.42908 * 109.47118 * 64.99841 * 4 2 1 6 6 C 1.53000 * 109.47192 * 119.99580 * 2 1 3 7 7 C 1.53049 * 109.46034 * 300.00564 * 6 2 1 8 8 C 1.53190 * 109.31246 * 178.62399 * 7 6 2 9 9 N 1.46932 * 108.77381 * 54.63625 * 8 7 6 10 10 C 1.34770 * 120.63108 * 126.36975 * 9 8 7 11 11 O 1.21587 * 120.00139 * 354.15714 * 10 9 8 12 12 C 1.47539 * 119.99905 * 174.16068 * 10 9 8 13 13 C 1.39666 * 120.19515 * 306.23605 * 12 10 9 14 14 C 1.37831 * 119.91370 * 180.02562 * 13 12 10 15 15 C 1.38574 * 120.32746 * 0.02562 * 14 13 12 16 16 C 1.38027 * 120.39926 * 359.68507 * 15 14 13 17 17 C 1.38836 * 120.06965 * 0.59086 * 16 15 14 18 18 O 1.35519 * 120.15818 * 179.69983 * 17 16 15 19 19 C 1.34818 * 117.00200 * 5.44820 * 18 17 16 20 20 H 1.07999 * 119.99945 * 354.94910 * 19 18 17 21 21 C 1.38693 * 120.00316 * 174.67611 * 19 18 17 22 22 N 1.31518 * 120.00169 * 180.27289 * 21 19 18 23 23 Si 1.86801 * 119.99933 * 0.27198 * 21 19 18 24 24 H 1.48503 * 109.46924 * 89.99857 * 23 21 19 25 25 H 1.48492 * 109.47326 * 210.00062 * 23 21 19 26 26 H 1.48496 * 109.47090 * 330.00287 * 23 21 19 27 27 C 1.46932 * 118.73613 * 306.63972 * 9 8 7 28 28 C 1.52756 * 109.00676 * 53.31131 * 27 9 8 29 29 H 1.09007 * 109.47014 * 60.00390 * 1 2 3 30 30 H 1.08996 * 109.47287 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47718 * 300.00653 * 1 2 3 32 32 H 1.09000 * 109.47687 * 184.99827 * 4 2 1 33 33 H 1.09002 * 109.47246 * 305.00236 * 4 2 1 34 34 H 0.96698 * 114.00019 * 179.97438 * 5 4 2 35 35 H 1.08998 * 109.45752 * 59.97425 * 6 2 1 36 36 H 1.08996 * 109.49629 * 58.66851 * 7 6 2 37 37 H 1.09004 * 109.51649 * 298.59248 * 7 6 2 38 38 H 1.08995 * 109.58950 * 294.84856 * 8 7 6 39 39 H 1.08997 * 109.70378 * 174.48742 * 8 7 6 40 40 H 1.07991 * 120.04307 * 0.04734 * 13 12 10 41 41 H 1.08003 * 119.83487 * 180.02562 * 14 13 12 42 42 H 1.08002 * 119.79887 * 179.97438 * 15 14 13 43 43 H 1.08000 * 119.96432 * 180.30117 * 16 15 14 44 44 H 0.96998 * 119.99865 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.58273 * 173.14838 * 27 9 8 46 46 H 1.08999 * 109.58420 * 293.57099 * 27 9 8 47 47 H 1.09006 * 109.56342 * 185.55063 * 28 27 9 48 48 H 1.09001 * 109.38831 * 65.51622 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 1.6620 0.0167 -2.4131 6 6 2.0400 -0.7212 1.2493 7 6 1.5295 0.0005 2.4987 8 6 2.0135 -0.7439 3.7470 9 7 3.4754 -0.8764 3.6815 10 6 4.2493 -0.4568 4.7020 11 8 3.7502 0.1325 5.6411 12 6 5.7022 -0.7123 4.6794 13 6 6.1844 -2.0101 4.4951 14 6 7.5429 -2.2423 4.4755 15 6 8.4344 -1.1939 4.6385 16 6 7.9724 0.0946 4.8156 17 6 6.6074 0.3465 4.8438 18 8 6.1518 1.6101 5.0236 19 6 7.0729 2.5941 5.0561 20 1 8.1246 2.3505 5.0233 21 6 6.6699 3.9193 5.1259 22 7 7.5684 4.8794 5.1522 23 14 4.8509 4.3406 5.1826 24 1 4.3974 4.3872 6.5959 25 1 4.6294 5.6646 4.5477 26 1 4.0798 3.3048 4.4493 27 6 4.0778 -1.4697 2.4798 28 6 3.5703 -0.7222 1.2481 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.1264 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 1.9533 -0.3830 -3.2440 35 1 1.6761 -1.7486 1.2494 36 1 0.4398 0.0214 2.4871 37 1 1.9129 1.0209 2.5120 38 1 1.5581 -1.7336 3.7818 39 1 1.7372 -0.1829 4.6397 40 1 5.4938 -2.8304 4.3677 41 1 7.9144 -3.2463 4.3325 42 1 9.4971 -1.3857 4.6221 43 1 8.6735 0.9071 4.9370 44 1 7.2864 5.8062 5.2006 45 1 5.1631 -1.3852 2.5355 46 1 3.7941 -2.5197 2.4093 47 1 3.9331 -1.2157 0.3465 48 1 3.9348 0.3048 1.2724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846475952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:40 Heat of formation + Delta-G solvation = -118.875132 kcal Electronic energy + Delta-G solvation = -29788.907139 eV Core-core repulsion = 25808.150415 eV Total energy + Delta-G solvation = -3980.756725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -41.71621 -40.55638 -39.32432 -38.20045 -37.62616 -35.53184 -34.56564 -32.91166 -32.01365 -31.20448 -30.83698 -27.46886 -27.40142 -26.36333 -24.43177 -23.93918 -23.03128 -22.24317 -20.97085 -20.47935 -19.89373 -19.03821 -18.41117 -17.95988 -17.21452 -16.81827 -16.48032 -16.17914 -15.81044 -15.62198 -15.52055 -15.48307 -15.41357 -15.05194 -14.88738 -14.59030 -14.41942 -14.22101 -14.07880 -13.95327 -13.44316 -13.33587 -13.15768 -12.86459 -12.83152 -12.65434 -12.53755 -12.42708 -12.26097 -12.14937 -12.00207 -11.57050 -11.55834 -11.40740 -11.17313 -11.02334 -10.78982 -10.70948 -9.84651 -9.62065 -9.17372 -8.62056 -6.31183 0.18534 0.61964 1.15524 1.21390 1.39207 1.67657 2.09660 2.16807 2.67983 2.96143 3.05700 3.28631 3.54768 3.69719 3.83052 3.99365 4.04975 4.08974 4.11604 4.23087 4.28582 4.39698 4.43152 4.48411 4.50586 4.52075 4.56419 4.69183 4.76525 4.78890 4.81446 4.86939 4.93538 4.96694 5.01946 5.06155 5.08283 5.19659 5.23941 5.29210 5.41777 5.47390 5.52317 5.58808 5.65861 5.69226 5.81879 6.14160 6.37414 6.74283 6.96000 7.19529 7.52117 8.49232 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.004224 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.431121 B = 6627.630262 C = 7847.965295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.044 0.956 4 C 0.078 3.922 5 O -0.597 6.597 6 C -0.067 4.067 7 C -0.127 4.127 8 C 0.109 3.891 9 N -0.607 5.607 10 C 0.566 3.434 11 O -0.588 6.588 12 C -0.219 4.219 13 C -0.034 4.034 14 C -0.178 4.178 15 C -0.049 4.049 16 C -0.242 4.242 17 C 0.153 3.847 18 O -0.236 6.236 19 C -0.398 4.398 20 H 0.095 0.905 21 C 0.027 3.973 22 N -0.910 5.910 23 Si 0.953 3.047 24 H -0.274 1.274 25 H -0.258 1.258 26 H -0.283 1.283 27 C 0.103 3.897 28 C -0.134 4.134 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.395 0.605 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.028 0.972 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.160 0.840 41 H 0.169 0.831 42 H 0.152 0.848 43 H 0.115 0.885 44 H 0.286 0.714 45 H 0.083 0.917 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.989 -20.817 -14.125 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 H 0.063 0.937 4 C 0.001 3.999 5 O -0.405 6.405 6 C -0.085 4.085 7 C -0.165 4.165 8 C -0.013 4.013 9 N -0.340 5.340 10 C 0.356 3.644 11 O -0.469 6.469 12 C -0.224 4.224 13 C -0.052 4.052 14 C -0.196 4.196 15 C -0.067 4.067 16 C -0.261 4.261 17 C 0.102 3.898 18 O -0.142 6.142 19 C -0.474 4.474 20 H 0.112 0.888 21 C -0.173 4.173 22 N -0.550 5.550 23 Si 0.778 3.222 24 H -0.200 1.200 25 H -0.182 1.182 26 H -0.209 1.209 27 C -0.018 4.018 28 C -0.172 4.172 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.245 0.755 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.047 0.953 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.177 0.823 41 H 0.186 0.814 42 H 0.170 0.830 43 H 0.133 0.867 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.128 0.872 47 H 0.126 0.874 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.712 -19.785 -13.163 26.066 hybrid contribution 0.097 1.211 0.116 1.220 sum -10.615 -18.574 -13.047 25.058 Atomic orbital electron populations 1.21777 0.94030 1.02617 1.01362 1.21118 0.97049 0.99061 0.93550 0.93719 1.22348 0.98681 0.94439 0.84406 1.86440 1.81891 1.54568 1.17646 1.21060 0.94305 1.00806 0.92334 1.22001 1.02115 0.98115 0.94276 1.21709 0.78932 1.01999 0.98646 1.48124 1.07078 1.61333 1.17429 1.18540 0.86969 0.76840 0.82028 1.90709 1.75807 1.42695 1.37702 1.19127 0.91143 0.94447 1.17643 1.21224 0.97052 0.92686 0.94263 1.21227 0.91847 1.00310 1.06255 1.21419 1.01438 0.90578 0.93267 1.21309 0.93793 0.99678 1.11332 1.19630 0.93225 0.84344 0.92606 1.83595 1.36687 1.13306 1.80593 1.20819 0.89204 0.85179 1.52197 0.88798 1.24971 1.02545 0.94077 0.95709 1.69664 1.35013 1.00739 1.49563 0.85477 0.80060 0.77660 0.78983 1.19990 1.18197 1.20900 1.22008 0.99108 0.98347 0.82368 1.22039 0.96225 1.00217 0.98762 0.93272 0.90975 0.92728 0.92693 0.91390 0.75502 0.87447 0.88251 0.95288 0.87788 0.92328 0.82272 0.81389 0.83029 0.86703 0.90384 0.89879 0.87158 0.87419 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.74 71.98 0.63 -1.68 16 2 C -0.09 -1.63 2.21 -10.80 -0.02 -1.65 16 3 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 4 C 0.08 1.11 6.21 71.98 0.45 1.56 16 5 O -0.60 -9.96 13.20 -148.98 -1.97 -11.92 16 6 C -0.07 -1.15 1.74 -10.77 -0.02 -1.17 16 7 C -0.13 -2.93 5.05 30.67 0.15 -2.77 16 8 C 0.11 2.86 6.45 86.36 0.56 3.42 16 9 N -0.61 -18.70 2.98 -823.50 -2.45 -21.15 16 10 C 0.57 23.96 6.83 86.70 0.59 24.55 16 11 O -0.59 -30.97 16.16 -0.59 -0.01 -30.98 16 12 C -0.22 -8.83 4.61 -19.99 -0.09 -8.92 16 13 C -0.03 -0.95 7.79 22.52 0.18 -0.77 16 14 C -0.18 -4.35 10.02 22.25 0.22 -4.13 16 15 C -0.05 -1.48 10.03 22.30 0.22 -1.25 16 16 C -0.24 -10.28 9.16 22.36 0.20 -10.08 16 17 C 0.15 7.48 6.64 22.91 0.15 7.64 16 18 O -0.24 -13.92 7.78 -16.67 -0.13 -14.05 16 19 C -0.40 -24.43 9.95 67.93 0.68 -23.75 16 20 H 0.09 5.81 5.44 -2.91 -0.02 5.80 16 21 C 0.03 1.66 5.49 84.85 0.47 2.12 16 22 N -0.91 -55.69 13.96 21.62 0.30 -55.38 16 23 Si 0.95 51.13 28.62 68.60 1.96 53.10 16 24 H -0.27 -14.65 7.11 99.48 0.71 -13.94 16 25 H -0.26 -12.51 7.11 99.48 0.71 -11.81 16 26 H -0.28 -16.22 7.11 99.48 0.71 -15.51 16 27 C 0.10 2.21 5.54 86.22 0.48 2.68 16 28 C -0.13 -2.70 5.03 30.52 0.15 -2.54 16 29 H 0.05 0.92 7.82 -2.38 -0.02 0.90 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.92 6.40 -2.39 -0.02 0.90 16 32 H 0.05 0.71 6.14 -2.39 -0.01 0.70 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.40 2.86 9.12 -74.06 -0.68 2.19 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.10 1.82 6.36 -2.39 -0.02 1.80 16 37 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 1.95 6.99 -2.39 -0.02 1.93 16 40 H 0.16 3.13 7.76 -2.92 -0.02 3.11 16 41 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 43 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 44 H 0.29 16.13 8.31 -92.71 -0.77 15.36 16 45 H 0.08 2.00 5.40 -2.39 -0.01 1.99 16 46 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.11 1.48 6.25 -2.38 -0.01 1.46 16 48 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -85.22 378.38 3.01 -82.20 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.31 Total: 14.95 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 5.00 Total: -16.75 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -2.15 Total: -76.54 kcal Atomic # 8 Polarization: -54.85 SS G_CDS: -2.11 Total: -56.95 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 1.96 Total: 53.10 kcal Total: -85.22 3.01 -82.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846475952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.673 kcal (2) G-P(sol) polarization free energy of solvation -85.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds