Wall clock time and date at job start Tue Mar 31 2020 18:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47318 * 2 1 4 4 C 1.42899 * 114.00054 * 175.19586 * 3 2 1 5 5 H 1.08993 * 109.47091 * 28.70461 * 4 3 2 6 6 C 1.50702 * 109.46678 * 268.70418 * 4 3 2 7 7 O 1.21278 * 120.00158 * 0.02562 * 6 4 3 8 8 N 1.34776 * 119.99768 * 180.02562 * 6 4 3 9 9 C 1.46500 * 119.99916 * 180.02562 * 8 6 4 10 10 C 1.50706 * 109.47146 * 179.97438 * 9 8 6 11 11 C 1.38633 * 119.75128 * 269.72501 * 10 9 8 12 12 C 1.37613 * 120.24490 * 179.71875 * 11 10 9 13 13 C 1.40706 * 119.74743 * 0.57540 * 12 11 10 14 14 C 1.41395 * 120.24500 * 179.67897 * 13 12 11 15 15 H 1.07999 * 120.00053 * 25.82765 * 14 13 12 16 16 C 1.39950 * 119.99970 * 205.82571 * 14 13 12 17 17 N 1.30816 * 120.00123 * 14.15581 * 16 14 13 18 18 Si 1.86802 * 119.99823 * 194.15293 * 16 14 13 19 19 H 1.48498 * 109.47407 * 60.00388 * 18 16 14 20 20 H 1.48501 * 109.47059 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47339 * 300.00139 * 18 16 14 22 22 C 1.40716 * 119.51163 * 359.70281 * 13 12 11 23 23 C 1.37617 * 119.74469 * 359.97438 * 22 13 12 24 24 C 1.52999 * 109.46985 * 148.71231 * 4 3 2 25 25 H 1.09005 * 110.45600 * 174.14528 * 24 4 3 26 26 C 1.54512 * 110.50724 * 296.74320 * 24 4 3 27 27 C 1.54478 * 104.06046 * 118.65228 * 26 24 4 28 28 O 1.44418 * 104.80764 * 23.97461 * 27 26 24 29 29 C 1.44425 * 105.27705 * 319.49540 * 28 27 26 30 30 H 1.09002 * 109.47522 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47452 * 300.00709 * 1 2 3 32 32 H 1.09009 * 109.46969 * 60.00170 * 1 2 3 33 33 H 1.09000 * 109.47452 * 239.99291 * 2 1 3 34 34 H 1.08999 * 109.46598 * 119.99483 * 2 1 3 35 35 H 0.96997 * 120.00154 * 0.02562 * 8 6 4 36 36 H 1.09006 * 109.47262 * 299.99879 * 9 8 6 37 37 H 1.09004 * 109.47197 * 60.00219 * 9 8 6 38 38 H 1.07995 * 119.87266 * 359.97438 * 11 10 9 39 39 H 1.08007 * 120.12543 * 180.27801 * 12 11 10 40 40 H 0.97001 * 120.00397 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.12821 * 179.97438 * 22 13 12 42 42 H 1.08004 * 119.87641 * 180.02562 * 23 22 13 43 43 H 1.09005 * 110.50885 * 237.29100 * 26 24 4 44 44 H 1.09001 * 110.51349 * 359.86775 * 26 24 4 45 45 H 1.08997 * 110.37475 * 142.81115 * 27 26 24 46 46 H 1.09006 * 110.36760 * 265.03456 * 27 26 24 47 47 H 1.09004 * 110.37157 * 281.67986 * 29 28 27 48 48 H 1.08994 * 110.37704 * 159.34180 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4266 1.4616 0.1093 5 1 3.8965 0.5788 -0.3240 6 6 3.8110 1.5735 1.5622 7 8 2.9534 1.5564 2.4195 8 7 5.1080 1.6924 1.9087 9 6 5.4819 1.8006 3.3211 10 6 6.9797 1.9213 3.4365 11 6 7.7543 0.7785 3.5625 12 6 9.1232 0.8765 3.6628 13 6 9.7353 2.1435 3.6492 14 6 11.1404 2.2568 3.7584 15 1 11.7742 1.4416 3.4418 16 6 11.7100 3.4254 4.2767 17 7 10.9627 4.2917 4.9109 18 14 13.5375 3.7479 4.0629 19 1 13.8649 3.8009 2.6155 20 1 13.8891 5.0434 4.6981 21 1 14.3115 2.6558 4.7059 22 6 8.9386 3.2969 3.5267 23 6 7.5719 3.1746 3.4210 24 6 3.8969 2.7098 -0.6402 25 1 4.9633 2.8702 -0.4815 26 6 3.5869 2.5843 -2.1486 27 6 2.6273 3.7608 -2.4337 28 8 2.9070 4.7251 -1.3956 29 6 3.0879 3.9472 -0.1923 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 5.7940 1.7064 1.2230 36 1 5.0114 2.6830 3.7550 37 1 5.1473 0.9109 3.8547 38 1 7.2818 -0.1926 3.5779 39 1 9.7252 -0.0153 3.7563 40 1 11.3575 5.1015 5.2705 41 1 9.3979 4.2743 3.5156 42 1 6.9584 4.0585 3.3265 43 1 4.4997 2.6852 -2.7358 44 1 3.1006 1.6321 -2.3608 45 1 2.8327 4.1890 -3.4147 46 1 1.5909 3.4279 -2.3753 47 1 2.1223 3.6432 0.2118 48 1 3.6473 4.5185 0.5484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869062156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:13 Heat of formation + Delta-G solvation = -138.681239 kcal Electronic energy + Delta-G solvation = -28607.733974 eV Core-core repulsion = 24626.118392 eV Total energy + Delta-G solvation = -3981.615582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.54072 -40.04253 -39.42928 -38.40894 -36.30353 -35.16460 -34.21939 -32.10003 -31.84323 -31.18417 -30.39360 -28.87468 -27.23832 -25.20465 -24.05345 -23.63158 -22.90098 -22.01711 -21.84819 -21.11723 -19.23758 -18.86805 -18.07593 -17.28691 -17.18372 -17.04779 -16.64100 -16.25153 -16.10430 -15.94738 -15.74431 -15.50402 -15.21956 -14.99204 -14.56361 -14.28839 -14.18145 -13.83685 -13.67777 -13.49765 -13.33083 -13.17441 -12.93825 -12.89010 -12.74954 -12.71152 -12.39340 -12.36542 -12.20101 -12.17216 -11.84493 -11.64745 -11.51335 -11.38525 -11.28188 -11.05841 -10.74892 -10.32091 -10.06216 -9.39643 -9.25942 -8.63878 -6.38261 0.83694 1.13319 1.38792 1.48001 1.50868 1.53289 2.15858 2.20292 2.61978 2.79066 3.01894 3.42399 3.65082 3.73428 3.82512 3.86760 4.07791 4.16366 4.20724 4.22225 4.29523 4.36767 4.38703 4.46893 4.48928 4.51513 4.64886 4.71320 4.79214 4.81414 4.87733 4.91771 5.04188 5.04751 5.07397 5.13369 5.14492 5.26182 5.34809 5.42308 5.45477 5.68435 5.82020 5.90168 6.04947 6.08847 6.19667 6.36057 6.60254 6.68248 6.92033 7.00483 7.21801 8.31315 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.002461 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.929356 B =11376.147920 C =12311.069338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.368 6.368 4 C 0.090 3.910 5 H 0.121 0.879 6 C 0.483 3.517 7 O -0.575 6.575 8 N -0.707 5.707 9 C 0.193 3.807 10 C -0.224 4.224 11 C -0.068 4.068 12 C -0.240 4.240 13 C 0.085 3.915 14 C -0.495 4.495 15 H 0.078 0.922 16 C 0.033 3.967 17 N -0.826 5.826 18 Si 0.982 3.018 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.260 1.260 22 C -0.189 4.189 23 C -0.084 4.084 24 C -0.114 4.114 25 H 0.110 0.890 26 C -0.136 4.136 27 C 0.040 3.960 28 O -0.399 6.399 29 C 0.052 3.948 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.410 0.590 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.288 0.712 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 -5.857 -14.801 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 O -0.286 6.286 4 C 0.029 3.971 5 H 0.139 0.861 6 C 0.270 3.730 7 O -0.455 6.455 8 N -0.360 5.360 9 C 0.071 3.929 10 C -0.226 4.226 11 C -0.087 4.087 12 C -0.260 4.260 13 C 0.083 3.917 14 C -0.525 4.525 15 H 0.096 0.904 16 C -0.182 4.182 17 N -0.452 5.452 18 Si 0.803 3.197 19 H -0.183 1.183 20 H -0.194 1.194 21 H -0.184 1.184 22 C -0.208 4.208 23 C -0.102 4.102 24 C -0.133 4.133 25 H 0.128 0.872 26 C -0.173 4.173 27 C -0.036 4.036 28 O -0.318 6.318 29 C -0.024 4.024 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.246 0.754 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.135 0.865 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.125 0.875 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.985 -5.263 -14.083 20.533 hybrid contribution 1.316 0.005 0.491 1.405 sum -12.668 -5.257 -13.592 19.310 Atomic orbital electron populations 1.21719 0.92788 1.03313 1.02505 1.22768 0.96645 0.82676 1.00616 1.87969 1.18971 1.28196 1.93485 1.21978 0.84203 1.01031 0.89903 0.86133 1.21914 0.82387 0.75899 0.92811 1.90677 1.50404 1.51324 1.53062 1.46353 1.07473 1.73009 1.09196 1.19712 0.90967 1.00469 0.81798 1.19180 0.93423 0.93036 1.16930 1.20669 0.93068 0.97117 0.97839 1.21170 0.94727 0.96467 1.13592 1.18011 0.93964 0.91953 0.87807 1.19883 0.92599 1.01691 1.38294 0.90421 1.26774 1.05281 0.94453 0.91674 1.69851 1.40023 1.09705 1.25578 0.85241 0.76185 0.78464 0.79792 1.18298 1.19437 1.18425 1.21323 0.93255 0.98705 1.07541 1.20751 0.94269 0.96202 0.99020 1.22720 1.01409 0.92526 0.96627 0.87219 1.22933 1.01153 1.00265 0.92953 1.23584 0.98894 0.88971 0.92139 1.89092 1.92119 1.31591 1.19018 1.23322 0.99466 0.91467 0.88188 0.89127 0.93608 0.91269 0.90547 0.94517 0.75380 0.92986 0.92210 0.86532 0.88273 0.90135 0.87993 0.87965 0.88622 0.88573 0.87547 0.92000 0.92257 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.05 0.86 6.44 71.98 0.46 1.32 16 3 O -0.37 -8.17 7.94 -129.94 -1.03 -9.20 16 4 C 0.09 1.82 2.07 29.85 0.06 1.89 16 5 H 0.12 1.70 7.81 -2.39 -0.02 1.69 16 6 C 0.48 13.59 6.81 87.66 0.60 14.19 16 7 O -0.58 -21.15 16.50 16.02 0.26 -20.88 16 8 N -0.71 -19.48 5.41 -466.77 -2.53 -22.00 16 9 C 0.19 6.45 5.79 85.63 0.50 6.94 16 10 C -0.22 -8.67 5.27 -19.67 -0.10 -8.77 16 11 C -0.07 -2.72 9.67 22.22 0.21 -2.51 16 12 C -0.24 -11.02 9.80 22.73 0.22 -10.80 16 13 C 0.09 4.39 5.57 -21.29 -0.12 4.27 16 14 C -0.50 -25.74 9.07 23.46 0.21 -25.53 16 15 H 0.08 3.86 7.88 -2.91 -0.02 3.84 16 16 C 0.03 1.62 5.21 85.26 0.44 2.06 16 17 N -0.83 -42.36 10.83 21.83 0.24 -42.12 16 18 Si 0.98 37.10 29.58 68.60 2.03 39.13 16 19 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 20 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 22 C -0.19 -9.48 8.68 22.73 0.20 -9.29 16 23 C -0.08 -3.62 9.67 22.22 0.21 -3.40 16 24 C -0.11 -2.13 2.92 -9.78 -0.03 -2.16 16 25 H 0.11 1.91 7.47 -2.38 -0.02 1.89 16 26 C -0.14 -1.87 6.54 31.61 0.21 -1.66 16 27 C 0.04 0.69 7.63 72.48 0.55 1.24 16 28 O -0.40 -10.05 11.65 -148.98 -1.74 -11.78 16 29 C 0.05 1.29 6.69 72.48 0.48 1.78 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.41 9.76 7.85 -92.71 -0.73 9.03 16 36 H 0.05 1.84 8.08 -2.38 -0.02 1.82 16 37 H 0.06 2.00 8.08 -2.38 -0.02 1.99 16 38 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 39 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 41 H 0.10 5.45 6.12 -2.91 -0.02 5.43 16 42 H 0.10 4.07 8.06 -2.91 -0.02 4.04 16 43 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.10 1.04 7.62 -2.39 -0.02 1.02 16 45 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.06 1.65 6.93 -2.39 -0.02 1.64 16 48 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -64.65 394.94 2.32 -62.33 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.23 Total: 36.46 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 4.86 Total: -31.93 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -2.29 Total: -64.13 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -2.50 Total: -41.86 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Total: -64.65 2.32 -62.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869062156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.352 kcal (2) G-P(sol) polarization free energy of solvation -64.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds