Wall clock time and date at job start Tue Mar 31 2020 18:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47003 * 2 1 4 4 C 1.34719 * 116.99561 * 180.02562 * 3 2 1 5 5 O 1.21468 * 119.99850 * 359.97438 * 4 3 2 6 6 C 1.47729 * 119.99590 * 179.97438 * 4 3 2 7 7 C 1.39647 * 120.15054 * 5.67395 * 6 4 3 8 8 C 1.37925 * 119.84571 * 180.31767 * 7 6 4 9 9 C 1.38387 * 120.14855 * 359.70257 * 8 7 6 10 10 C 1.38347 * 120.30646 * 0.02562 * 9 8 7 11 11 C 1.37964 * 120.14661 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.07365 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46442 * 98.64021 * 12 11 10 14 14 O 1.42905 * 109.46617 * 179.97438 * 13 12 11 15 15 C 1.42906 * 113.99526 * 179.97438 * 14 13 12 16 16 C 1.53515 * 114.16812 * 210.00091 * 15 14 13 17 17 N 1.47483 * 87.93197 * 220.33253 * 16 15 14 18 18 C 1.46896 * 111.00085 * 138.70446 * 17 16 15 19 19 C 1.50702 * 109.46922 * 169.99833 * 18 17 16 20 20 H 1.07995 * 120.00502 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99900 * 179.71976 * 19 18 17 22 22 N 1.31519 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00318 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46826 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47126 * 120.00129 * 23 21 19 26 26 H 1.48499 * 109.47377 * 240.00451 * 23 21 19 27 27 C 1.47485 * 87.83724 * 27.00973 * 17 16 15 28 28 H 1.08995 * 109.47080 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47140 * 300.00529 * 1 2 3 30 30 H 1.09000 * 109.46935 * 59.99852 * 1 2 3 31 31 H 1.08997 * 109.47065 * 239.99664 * 2 1 3 32 32 H 1.08999 * 109.46695 * 119.99652 * 2 1 3 33 33 H 1.07998 * 120.08044 * 0.02618 * 7 6 4 34 34 H 1.08000 * 119.92633 * 179.73044 * 8 7 6 35 35 H 1.08006 * 119.84518 * 180.02562 * 9 8 7 36 36 H 1.08000 * 119.92365 * 179.97438 * 10 9 8 37 37 H 1.08997 * 109.47179 * 338.64472 * 12 11 10 38 38 H 1.08992 * 109.47078 * 218.63566 * 12 11 10 39 39 H 1.08997 * 109.47066 * 60.00381 * 13 12 11 40 40 H 1.08998 * 109.47078 * 299.99961 * 13 12 11 41 41 H 1.08999 * 113.38773 * 343.07948 * 15 14 13 42 42 H 1.09000 * 113.47752 * 105.56800 * 16 15 14 43 43 H 1.08996 * 113.47760 * 335.09662 * 16 15 14 44 44 H 1.09001 * 109.47209 * 49.99881 * 18 17 16 45 45 H 1.08999 * 109.47119 * 289.99782 * 18 17 16 46 46 H 0.96998 * 120.00280 * 179.97438 * 22 21 19 47 47 H 1.08994 * 113.47348 * 87.75242 * 27 17 16 48 48 H 1.08996 * 113.47799 * 218.22563 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5454 -0.0005 5 8 4.0894 0.5821 -0.0005 6 6 3.9142 2.9105 -0.0011 7 6 3.0719 4.0180 0.1182 8 6 3.6052 5.2900 0.1103 9 6 4.9721 5.4698 -0.0093 10 6 5.8128 4.3769 -0.1223 11 6 5.2926 3.0991 -0.1169 12 6 6.2099 1.9098 -0.2406 13 6 6.4798 1.3274 1.1483 14 8 7.3491 0.1993 1.0309 15 6 7.6667 -0.4219 2.2781 16 6 9.0496 -1.0876 2.3146 17 7 8.4362 -2.1976 3.0675 18 6 8.9463 -3.4943 2.6024 19 6 8.4930 -4.5795 3.5447 20 1 7.8864 -4.3310 4.4029 21 6 8.8476 -5.8907 3.3077 22 7 9.5817 -6.1942 2.2595 23 14 8.2852 -7.2361 4.4752 24 1 7.4765 -6.6374 5.5674 25 1 7.4602 -8.2227 3.7328 26 1 9.4712 -7.9176 5.0532 27 6 7.1593 -1.8649 2.4088 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0050 3.8791 0.2118 34 1 2.9546 6.1475 0.1982 35 1 5.3845 6.4680 -0.0145 36 1 6.8786 4.5244 -0.2158 37 1 7.1511 2.2223 -0.6927 38 1 5.7397 1.1520 -0.8672 39 1 5.5386 1.0149 1.6004 40 1 6.9500 2.0853 1.7749 41 1 7.4512 0.2069 3.1419 42 1 9.7862 -0.5272 2.8903 43 1 9.4165 -1.3806 1.3310 44 1 10.0357 -3.4679 2.5758 45 1 8.5633 -3.6979 1.6025 46 1 9.8315 -7.1165 2.0929 47 1 7.0219 -2.3652 1.4503 48 1 6.2940 -1.9632 3.0643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224856472.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:32 Heat of formation + Delta-G solvation = -67.060208 kcal Electronic energy + Delta-G solvation = -28101.380729 eV Core-core repulsion = 24122.870868 eV Total energy + Delta-G solvation = -3978.509861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.01608 -39.44971 -39.19667 -37.00586 -36.45052 -33.46165 -32.72104 -32.40722 -31.29150 -29.48310 -28.45813 -25.31161 -25.19383 -24.79371 -23.45009 -23.23398 -21.76142 -21.45595 -20.83639 -19.26784 -18.23327 -17.15738 -16.93344 -16.68433 -16.20760 -16.00738 -15.83313 -15.24637 -14.95378 -14.81932 -14.50033 -14.33652 -13.91142 -13.76934 -13.46965 -13.39030 -13.07715 -13.04511 -12.51244 -12.31974 -12.20398 -12.13332 -11.93423 -11.89360 -11.86988 -11.47876 -11.33994 -11.04535 -10.92024 -10.80366 -10.63304 -10.43116 -10.22598 -10.09818 -9.68594 -9.43643 -9.17731 -9.13723 -8.95128 -8.38692 -7.83588 -5.98377 -3.99275 0.35070 0.92090 2.29879 2.36948 3.34196 3.34359 3.40861 3.47010 3.86436 4.28152 4.46648 4.47790 4.50730 4.65383 4.66917 4.71946 4.88893 4.97254 4.99850 5.03278 5.10078 5.19992 5.25475 5.30029 5.36805 5.41603 5.48240 5.49227 5.53650 5.57665 5.64702 5.82141 5.84512 5.96947 6.00053 6.05205 6.17873 6.19228 6.27284 6.35056 6.45105 6.47593 6.52973 6.69186 7.28101 7.55125 7.62225 7.71718 7.92354 8.16844 8.51715 9.08308 9.64278 11.12897 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.002446 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.177554 B =11445.797200 C =13195.060996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.358 6.358 4 C 0.498 3.502 5 O -0.480 6.480 6 C -0.124 4.124 7 C -0.061 4.061 8 C -0.139 4.139 9 C -0.082 4.082 10 C -0.128 4.128 11 C -0.013 4.013 12 C -0.091 4.091 13 C 0.081 3.919 14 O -0.371 6.371 15 C 0.054 3.946 16 C -0.003 4.003 17 N -0.465 5.465 18 C 0.161 3.839 19 C -0.502 4.502 20 H 0.063 0.937 21 C 0.052 3.948 22 N -0.900 5.900 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.284 1.284 27 C -0.003 4.003 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.052 0.948 40 H 0.040 0.960 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.029 0.971 45 H 0.005 0.995 46 H 0.260 0.740 47 H 0.071 0.929 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.486 25.709 -7.393 31.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.276 6.276 4 C 0.343 3.657 5 O -0.368 6.368 6 C -0.125 4.125 7 C -0.079 4.079 8 C -0.157 4.157 9 C -0.100 4.100 10 C -0.145 4.145 11 C -0.013 4.013 12 C -0.128 4.128 13 C 0.004 3.996 14 O -0.289 6.289 15 C -0.004 4.004 16 C -0.132 4.132 17 N -0.190 5.190 18 C 0.035 3.965 19 C -0.541 4.541 20 H 0.082 0.918 21 C -0.148 4.148 22 N -0.540 5.540 23 Si 0.727 3.273 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.132 4.132 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.023 0.977 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.075 25.084 -6.929 30.588 hybrid contribution -0.346 -0.991 -0.130 1.058 sum -16.421 24.093 -7.059 29.999 Atomic orbital electron populations 1.21809 0.92555 1.03173 1.03338 1.23078 0.95270 0.79638 1.03178 1.86501 1.23806 1.32810 1.84436 1.21184 0.80784 0.89944 0.73828 1.90929 1.59371 1.42406 1.44110 1.19016 0.93452 0.90386 1.09680 1.21459 1.00160 0.91573 0.94716 1.21164 0.95490 0.97064 1.01988 1.21454 0.93619 0.99177 0.95742 1.21111 1.00630 0.91194 1.01611 1.19919 0.91934 0.95490 0.93957 1.20744 0.98314 0.95014 0.98757 1.22238 0.93745 0.87891 0.95695 1.87923 1.66442 1.44549 1.29975 1.23950 0.97260 0.93175 0.86038 1.24044 0.95759 0.94870 0.98516 1.68935 1.02387 1.04268 1.43377 1.20262 0.96027 0.85252 0.94995 1.21144 1.32075 0.90829 1.10039 0.91841 1.25019 0.95399 0.98793 0.95637 1.69975 1.37682 1.18772 1.27568 0.86416 0.78403 0.81588 0.80881 1.19655 1.21099 1.20997 1.24211 0.96257 0.93950 0.98786 0.90030 0.91504 0.91576 0.90939 0.90783 0.84463 0.85147 0.85221 0.84748 0.90405 0.87619 0.92960 0.94214 0.89168 0.90476 0.91315 0.95281 0.97677 0.92999 0.91063 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.57 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.36 -3.77 9.49 -40.54 -0.38 -4.15 16 4 C 0.50 6.03 7.76 34.61 0.27 6.30 16 5 O -0.48 -7.15 11.37 -19.24 -0.22 -7.37 16 6 C -0.12 -1.29 5.87 -104.98 -0.62 -1.91 16 7 C -0.06 -0.48 9.62 -39.17 -0.38 -0.86 16 8 C -0.14 -0.88 10.03 -39.64 -0.40 -1.28 16 9 C -0.08 -0.52 10.04 -39.49 -0.40 -0.91 16 10 C -0.13 -1.01 9.66 -39.64 -0.38 -1.39 16 11 C -0.01 -0.13 5.17 -104.21 -0.54 -0.67 16 12 C -0.09 -1.12 4.98 -27.88 -0.14 -1.26 16 13 C 0.08 1.14 5.29 37.16 0.20 1.34 16 14 O -0.37 -6.46 10.39 -35.23 -0.37 -6.83 16 15 C 0.05 0.97 4.65 -26.20 -0.12 0.85 16 16 C 0.00 -0.05 7.52 -7.53 -0.06 -0.11 16 17 N -0.47 -10.99 6.32 -246.08 -1.55 -12.55 16 18 C 0.16 4.47 4.57 -4.98 -0.02 4.45 16 19 C -0.50 -14.99 9.39 -34.44 -0.32 -15.31 16 20 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 21 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 23 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.00 -0.05 7.55 -7.53 -0.06 -0.11 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.14 0.89 7.63 -52.49 -0.40 0.49 16 34 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 35 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 36 H 0.13 0.85 8.04 -52.49 -0.42 0.43 16 37 H 0.08 0.85 8.02 -51.93 -0.42 0.44 16 38 H 0.11 1.50 5.97 -51.93 -0.31 1.19 16 39 H 0.05 0.79 6.56 -51.93 -0.34 0.45 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 1.46 7.88 -51.93 -0.41 1.05 16 42 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.07 1.41 7.91 -51.93 -0.41 1.00 16 44 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 45 H 0.01 0.16 7.30 -51.93 -0.38 -0.22 16 46 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.07 1.62 7.42 -51.93 -0.39 1.23 16 48 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 397.93 15.07 6.00 6.00 Total: -1.00 -34.30 397.93 -10.93 -45.23 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.67 Total: -1.56 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.45 Total: -9.18 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.82 Total: -39.57 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.97 Total: -18.35 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.30 -10.93 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224856472.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.834 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds