Wall clock time and date at job start Tue Mar 31 2020 19:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99576 * 2 1 4 4 O 1.42901 * 112.91361 * 291.47225 * 3 2 1 5 5 C 1.42895 * 113.99941 * 310.83330 * 4 3 2 6 6 C 1.53776 * 113.61288 * 62.72916 * 3 2 1 7 7 C 1.53781 * 87.08474 * 89.11202 * 6 3 2 8 8 C 1.53002 * 113.61652 * 139.98440 * 7 6 3 9 9 N 1.46498 * 109.47177 * 175.00134 * 8 7 6 10 10 C 1.34778 * 119.99894 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00080 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99725 * 179.97438 * 10 9 8 13 13 C 1.50704 * 109.46827 * 180.02562 * 12 10 9 14 14 C 1.37644 * 120.12723 * 265.30891 * 13 12 10 15 15 C 1.38612 * 120.24345 * 180.32566 * 14 13 12 16 16 C 1.38660 * 120.50314 * 359.66474 * 15 14 13 17 17 C 1.37591 * 120.24936 * 0.02562 * 16 15 14 18 18 C 1.40698 * 120.12501 * 85.00372 * 13 12 10 19 19 C 1.41396 * 120.24514 * 359.97438 * 18 13 12 20 20 H 1.07994 * 119.99622 * 333.98522 * 19 18 13 21 21 C 1.39949 * 119.99740 * 153.98218 * 19 18 13 22 22 N 1.30814 * 120.00065 * 334.38256 * 21 19 18 23 23 Si 1.86797 * 119.99449 * 154.38499 * 21 19 18 24 24 H 1.48506 * 109.46855 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47164 * 299.99505 * 23 21 19 26 26 H 1.48494 * 109.47234 * 60.00218 * 23 21 19 27 27 C 1.53777 * 87.08091 * 25.43174 * 7 6 3 28 28 H 1.09000 * 109.47444 * 64.33219 * 1 2 3 29 29 H 1.09008 * 109.46606 * 184.32940 * 1 2 3 30 30 H 1.08994 * 109.47092 * 304.32521 * 1 2 3 31 31 H 1.09000 * 109.47267 * 185.14342 * 5 4 3 32 32 H 1.09005 * 109.47197 * 305.14790 * 5 4 3 33 33 H 1.08995 * 109.47553 * 65.14392 * 5 4 3 34 34 H 1.09000 * 113.61600 * 334.56468 * 6 3 2 35 35 H 1.08997 * 113.61928 * 203.66131 * 6 3 2 36 36 H 1.09005 * 113.61065 * 270.80046 * 7 6 3 37 37 H 1.08993 * 109.46972 * 54.99587 * 8 7 6 38 38 H 1.09002 * 109.46745 * 294.99935 * 8 7 6 39 39 H 0.97005 * 119.99856 * 359.97438 * 9 8 7 40 40 H 1.09005 * 109.46654 * 60.00688 * 12 10 9 41 41 H 1.08994 * 109.47817 * 300.00612 * 12 10 9 42 42 H 1.07997 * 119.87973 * 0.02562 * 14 13 12 43 43 H 1.08002 * 119.75105 * 179.69903 * 15 14 13 44 44 H 1.08001 * 119.87420 * 180.02562 * 16 15 14 45 45 H 1.07997 * 120.13317 * 180.02562 * 17 16 15 46 46 H 0.97004 * 120.00606 * 353.58738 * 22 21 19 47 47 H 1.09002 * 113.61418 * 89.11471 * 27 7 6 48 48 H 1.09002 * 113.61659 * 220.01995 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 8 1.7962 2.0097 -1.2249 5 6 2.1181 1.2536 -2.3939 6 6 1.6708 2.1308 1.2524 7 6 2.9222 1.5156 1.9008 8 6 3.7266 2.5076 2.7434 9 7 4.8242 1.8036 3.4111 10 6 5.6710 2.4809 4.2115 11 8 5.5241 3.6730 4.3793 12 6 6.7998 1.7566 4.8988 13 6 7.5921 2.7338 5.7286 14 6 8.7198 3.3270 5.2080 15 6 9.4541 4.2210 5.9714 16 6 9.0592 4.5334 7.2634 17 6 7.9318 3.9572 7.8019 18 6 7.1783 3.0480 7.0361 19 6 6.0177 2.4501 7.5789 20 1 5.2310 2.1059 6.9240 21 6 5.8885 2.3043 8.9648 22 7 6.9561 2.2339 9.7174 23 14 4.1914 2.2103 9.7397 24 1 4.3267 2.0571 11.2106 25 1 3.4400 3.4552 9.4383 26 1 3.4585 1.0434 9.1864 27 6 3.4720 1.3289 0.4769 28 1 -0.3634 0.4451 -0.9262 29 1 -0.3633 -1.0248 0.0776 30 1 -0.3633 0.5795 0.8486 31 1 2.0160 1.8864 -3.2755 32 1 3.1443 0.8930 -2.3223 33 1 1.4396 0.4045 -2.4757 34 1 0.7389 1.8325 1.7326 35 1 1.7432 3.2074 1.0988 36 1 2.7279 0.5779 2.4216 37 1 3.0760 2.9595 3.4920 38 1 4.1335 3.2860 2.0980 39 1 4.9414 0.8500 3.2771 40 1 7.4502 1.3040 4.1502 41 1 6.3926 0.9786 5.5445 42 1 9.0363 3.0914 4.2027 43 1 10.3404 4.6781 5.5567 44 1 9.6387 5.2316 7.8491 45 1 7.6256 4.2022 8.8082 46 1 7.8351 2.1889 9.3095 47 1 4.0369 2.1864 0.1110 48 1 3.9942 0.3833 0.3308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262663576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:31 Heat of formation + Delta-G solvation = -97.677050 kcal Electronic energy + Delta-G solvation = -28452.394198 eV Core-core repulsion = 24472.556692 eV Total energy + Delta-G solvation = -3979.837507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.75307 -39.17237 -37.56750 -36.65674 -36.36821 -33.81145 -33.70747 -31.76045 -29.17999 -28.57323 -27.55911 -27.12191 -25.92975 -25.72529 -24.75613 -22.22289 -20.90199 -20.67093 -20.05157 -19.31478 -18.03328 -17.65937 -16.68531 -16.20403 -16.09784 -15.90771 -15.33631 -15.01666 -14.88680 -14.78206 -14.28117 -14.19969 -14.06303 -13.90154 -13.50704 -12.99134 -12.81845 -12.69642 -12.51562 -12.27544 -12.14421 -11.97492 -11.77773 -11.62939 -11.30220 -11.23424 -11.15115 -11.02090 -10.84544 -10.79944 -10.42869 -10.35923 -10.29260 -10.04864 -9.60404 -9.33878 -9.16628 -8.91394 -8.68794 -7.50459 -7.46195 -7.07638 -4.37221 2.79516 2.89532 3.06208 3.18164 3.27531 3.31980 3.35809 3.40402 3.63669 4.05941 4.12252 4.24924 4.42273 4.63629 4.73046 4.93516 4.97263 5.07368 5.07606 5.09481 5.23760 5.34876 5.37751 5.41267 5.44907 5.52944 5.58062 5.68552 5.77885 5.86278 5.99153 6.02734 6.14960 6.18750 6.22086 6.37864 6.40922 6.73272 6.80648 7.04932 7.08656 7.25918 7.47086 7.72378 7.87407 7.90781 7.96151 8.00883 8.26011 8.39736 8.83626 8.88242 8.97567 10.11520 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.002634 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.090724 B =10627.401351 C =12096.785505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.235 3.765 4 O -0.385 6.385 5 C 0.034 3.966 6 C -0.134 4.134 7 C -0.113 4.113 8 C 0.134 3.866 9 N -0.744 5.744 10 C 0.514 3.486 11 O -0.522 6.522 12 C -0.070 4.070 13 C -0.184 4.184 14 C -0.069 4.069 15 C -0.253 4.253 16 C -0.087 4.087 17 C -0.216 4.216 18 C 0.116 3.884 19 C -0.517 4.517 20 H 0.072 0.928 21 C 0.041 3.959 22 N -0.799 5.799 23 Si 1.060 2.940 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.277 1.277 27 C -0.133 4.133 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.396 0.604 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.299 0.701 47 H 0.105 0.895 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.182 -6.735 -18.063 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.294 6.294 3 C 0.158 3.842 4 O -0.306 6.306 5 C -0.062 4.062 6 C -0.172 4.172 7 C -0.132 4.132 8 C 0.009 3.991 9 N -0.399 5.399 10 C 0.301 3.699 11 O -0.395 6.395 12 C -0.110 4.110 13 C -0.186 4.186 14 C -0.088 4.088 15 C -0.273 4.273 16 C -0.105 4.105 17 C -0.235 4.235 18 C 0.113 3.887 19 C -0.545 4.545 20 H 0.090 0.910 21 C -0.181 4.181 22 N -0.422 5.422 23 Si 0.884 3.116 24 H -0.199 1.199 25 H -0.201 1.201 26 H -0.203 1.203 27 C -0.171 4.171 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.229 0.771 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.122 0.878 46 H 0.112 0.888 47 H 0.123 0.877 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.987 -5.917 -16.433 21.184 hybrid contribution 0.695 -0.381 -1.748 1.919 sum -11.293 -6.298 -18.181 22.310 Atomic orbital electron populations 1.22774 0.80393 1.02845 1.00841 1.88012 1.20633 1.26735 1.94024 1.23969 0.94640 0.81225 0.84356 1.88066 1.87845 1.40344 1.14368 1.22600 0.99740 0.96517 0.87342 1.23536 0.98839 1.01583 0.93286 1.22553 0.95784 1.00033 0.94789 1.21162 0.88438 0.94000 0.95453 1.46107 1.31244 1.12217 1.50323 1.21201 0.82863 0.88063 0.77744 1.90683 1.72613 1.15428 1.60805 1.20246 0.94303 0.98516 0.97918 1.19026 0.98056 1.04541 0.96941 1.20357 0.95237 0.96442 0.96737 1.20263 1.03184 1.07494 0.96320 1.20600 0.96564 0.98418 0.94944 1.21132 0.98904 1.02377 1.01063 1.17397 0.91184 0.89385 0.90704 1.20430 1.03242 1.36601 0.94241 0.90985 1.26917 1.05175 0.91522 0.94492 1.70437 1.01540 1.29243 1.41029 0.83720 0.73419 0.77930 0.76563 1.19921 1.20055 1.20256 1.23614 0.94333 1.03898 0.95260 0.93608 0.89329 0.93217 0.89788 0.93701 0.93743 0.89817 0.87720 0.87724 0.91420 0.91627 0.77075 0.90669 0.88666 0.89626 0.89478 0.89412 0.87805 0.88770 0.87660 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.74 101.05 1.09 1.29 16 2 O -0.37 -3.63 9.78 -58.60 -0.57 -4.21 16 3 C 0.24 2.27 1.04 -25.92 -0.03 2.24 16 4 O -0.39 -3.98 10.53 -58.60 -0.62 -4.59 16 5 C 0.03 0.27 10.65 101.05 1.08 1.35 16 6 C -0.13 -1.22 7.00 -25.92 -0.18 -1.41 16 7 C -0.11 -1.08 3.69 -89.81 -0.33 -1.41 16 8 C 0.13 1.70 5.51 -4.04 -0.02 1.68 16 9 N -0.74 -10.64 5.56 -60.30 -0.33 -10.97 16 10 C 0.51 10.05 7.46 -10.99 -0.08 9.97 16 11 O -0.52 -12.68 16.03 5.56 0.09 -12.59 16 12 C -0.07 -1.38 5.18 -29.03 -0.15 -1.53 16 13 C -0.18 -4.46 4.43 -103.91 -0.46 -4.92 16 14 C -0.07 -1.61 9.66 -39.66 -0.38 -2.00 16 15 C -0.25 -5.92 10.05 -39.29 -0.39 -6.32 16 16 C -0.09 -2.12 10.02 -39.66 -0.40 -2.51 16 17 C -0.22 -5.75 7.97 -38.87 -0.31 -6.06 16 18 C 0.12 3.11 5.29 -106.82 -0.56 2.55 16 19 C -0.52 -13.72 8.07 -37.74 -0.30 -14.02 16 20 H 0.07 1.88 6.74 -52.49 -0.35 1.53 16 21 C 0.04 1.04 4.93 -17.34 -0.09 0.95 16 22 N -0.80 -21.32 12.31 55.55 0.68 -20.64 16 23 Si 1.06 22.10 30.00 -169.99 -5.10 17.00 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 27 C -0.13 -1.24 7.12 -25.92 -0.18 -1.42 16 28 H 0.05 0.32 8.00 -51.93 -0.42 -0.09 16 29 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.05 0.33 6.42 -51.93 -0.33 0.00 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.34 8.02 -51.93 -0.42 -0.08 16 33 H 0.04 0.33 7.64 -51.93 -0.40 -0.06 16 34 H 0.08 0.69 6.52 -51.93 -0.34 0.35 16 35 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 39 H 0.40 4.44 8.47 -40.82 -0.35 4.10 16 40 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 41 H 0.10 1.85 7.06 -51.93 -0.37 1.48 16 42 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 45 H 0.10 2.84 6.53 -52.49 -0.34 2.50 16 46 H 0.30 8.17 6.75 -40.82 -0.28 7.89 16 47 H 0.11 0.99 7.90 -51.93 -0.41 0.58 16 48 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -32.37 393.28 -9.06 -41.43 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -7.42 Total: 10.22 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -1.72 Total: -21.57 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.35 Total: -31.61 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -1.10 Total: -21.39 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.10 Total: 17.00 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.37 -9.06 -41.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262663576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.247 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds